BAC Information

Click to search

BAC

Clone NameB6Ng01-018H18
Chromosome17 (Build37)
Map Location 34,799,378 - 34,800,236
singlet/doubletsinglet
Overlap genenone
Upstream geneHnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1
Downstream geneTnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018H18.bB6Ng01-018H18.g
ACCDH851876DH851877
length1,242862
definitionDH851876|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H18, 5' end.DH851877|Mus musculus domesticus DNA, BAC clone: B6Ng01-018H18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagctcagggtcagcttcaaggatttacttggaaccattggaa
cactggtagaggcttaactatatgtaaaaatcaatccttaaaggcactta
cagtaagacaatactgaaagagagcacacagatcaatgcaccagactaat
gttactgaataggtaacattcttactgaattccaagctcagggtcagctt
caaggatttacttggaaccattggaacactggtagaggcttaactatatg
taaaaatcaatccttaaaggcacttacagtaagacaatactgaaagagag
cacacagatcaatgcaccagactaatgttactgaataggtaacattctta
ctgaattccaagctcagggtcagcttcaaggatttacttggaaccattgg
aacactggtagaggcttaactatatgtaaaaatcaatccttaaaggcact
tacagtaagacaatactgaaagagagcacacagatcaatgcaccagacta
actcggaacagggtttgagtatatgggctattggaatgccaaggttccaa
gacgctgtttctgtgaaactctttgccatgtgactgcttcctggctttta
gacctaccatgcagacttcactggagtggatttagcattctccccctttc
ttttattatttttcagccgaagtttcagaatgttctgctttgtcgtagct
acagatctcaaaagaactctaggaggccagcagtttctgggacaggcgag
agccagagagcttctgaggtggcgccatcttcggctccagacaactggcc
accatcctggtgagagcacaggggtctgcctggcccaagaggtttctgcc
tcatgctctggcgggagccgccttggttccaggactcctcggagggcagg
ctgcactggtgagggtgtggaatacagagccagcagtttctgggacaggc
gagagccagagagcttctgagcggcgccatcttcggctcagacaccggca
acttcctgtcaagcacacagcttctgggaagatcctgtttgggcttcatc
ttcagcagtaggatgtccaacaccagataactgtgcacttcctgaaagag
gagaagccttgctgccagaccgtcttgaccactgaactcaaaggaagagc
tagttccagctcgcgtaaggtaccattcaaagacatctttacagacatta
actacgtcaggatgtccgaatggtgagggaatgcagaatatc
gaattcactctgtagaccagaaatccacctgcctctgcctcccaagtgct
gggattaaaggcattgccaccactgcccggctattttttttttaacacct
ttcatagacatgtgctcctttcccaccccatccatggtccccaatgaata
aagtgtcaaagttggccccacactgaataccaaaggtgctgagtcacagt
ttgggaagatgcccccaccctgctagccttcaaagattgggaagatgcca
agagggtgaggccagccccccaacatagttcagagaggcatgggggagac
acaagaaacacccaattctttgtttgcccagtgccaagagaagggtcaga
tttttccaagagttgggaagggaaacaggaagagtgctgatgttgacaga
agaagggatgggaagggcctgagaaagaggctctggggtgtggtctatgg
ggccacacctgtcttctcgatcaaccctgatgaagccaatggggtttcca
tactttttcctgctatagagagcctccatgagagagaaaattcagttgct
cataagagactggacatctagatgcccccggggtgtggagggagcaagaa
gtgtgtaccctctgctccccacttgtaaagagcagctcccgtgctgctca
cactacagctcagttctcagctgccctctgtgccattgtaacccactttt
cttagccacccaccagcaaccaggcgtggggcagccatggggggaaatgg
cttgcctaattggctcacatgcctgcagaaataccgcctcattcccgttg
ctacgtgcatggggtgaatgtgttcactcatatctctgtctggtggacat
acacgggtggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34799378_34800236
seq2: B6Ng01-018H18.g_71_932

seq1  GAATTCACTCTGTAGACCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCT  50

seq1  GGGATTAAAGGCATTGCCACCACTGCCCGGCTATTTTTTTTTTAACACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCATTGCCACCACTGCCCGGCTATTTTTTTTTTAACACCT  100

seq1  TTCATAGACATGTGCTCCTTTCCCACCCCATCCATGGTCCCCAATGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGACATGTGCTCCTTTCCCACCCCATCCATGGTCCCCAATGAATA  150

seq1  AAGTGTCAAAGTTGGCCCCACACTGAATACCAAAGGTGCTGAGTCACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCAAAGTTGGCCCCACACTGAATACCAAAGGTGCTGAGTCACAGT  200

seq1  TTGGGAAGATGCCCCCACCCTGCTAGCCTTCAAAGATTGGGAAGATGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGATGCCCCCACCCTGCTAGCCTTCAAAGATTGGGAAGATGCCA  250

seq1  AGAGGGTGAGGCCAGCCCCCCAACATAGTTCAGAGAGGCATGGGGGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGAGGCCAGCCCCCCAACATAGTTCAGAGAGGCATGGGGGAGAC  300

seq1  ACAAGAAACACCCAATTCTTTGTTTGCCCAGTGCCAAGAGAAGGGTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAACACCCAATTCTTTGTTTGCCCAGTGCCAAGAGAAGGGTCAGA  350

seq1  TTTTTCCAAGAGTTGGGAAGGGAAACAGGAAGAGTGCTGATGTTGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAAGAGTTGGGAAGGGAAACAGGAAGAGTGCTGATGTTGACAGA  400

seq1  AGAAGGGATGGGAAGGGCCTGAGAAAGAGGCTCTGGGGTGTGGTCTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATGGGAAGGGCCTGAGAAAGAGGCTCTGGGGTGTGGTCTATGG  450

seq1  GGCCACACCTGTCTTCTCGATCAACCCTGATGAAGCCAATGGGGTTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCTGTCTTCTCGATCAACCCTGATGAAGCCAATGGGGTTTCCA  500

seq1  TACTTTTTCCTGCTATAGAGAGCCTCCATGAGAGAGAAAATTCAGTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCTGCTATAGAGAGCCTCCATGAGAGAGAAAATTCAGTTGCT  550

seq1  CATAAGAGACTGGACATCTAGATGCCCCCGGGGTGTGGAGGGAGCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGACTGGACATCTAGATGCCCCCGGGGTGTGGAGGGAGCAAGAA  600

seq1  GTGTGTACCCTCTGCTCCCCACTTGTAAAGAGCAGCTCCCGTGCTGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTACCCTCTGCTCCCCACTTGTAAAGAGCAGCTCCCGTGCTGCTCA  650

seq1  CACTACAGCTCAGTTCTCAGCTGCCCTCTGTGCCATTGTAACCCAC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACTACAGCTCAGTTCTCAGCTGCCCTCTGTGCCATTGTAACCCACTTTT  700

seq1  CTTAGCCACCCACCAGCAACCAGGCGTGGGGCAGCCATGGGGGGAAATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCACCCACCAGCAACCAGGCGTGGGGCAGCCATGGGGGGAAATGG  750

seq1  CTTGCCTAAGTGGCTCACAGGCCTGCAGAAATACCGCCTCATTCCCGTTG  799
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGCCTAATTGGCTCACATGCCTGCAGAAATACCGCCTCATTCCCGTTG  800

seq1  CTACGTGCAT-GGGTGCATAGGTACACTCATATCTCTGTCT-GTGGACAT  847
      |||||||||| ||||| ||  || ||||||||||||||||| ||||||||
seq2  CTACGTGCATGGGGTGAATGTGTTCACTCATATCTCTGTCTGGTGGACAT  850

seq1  ACACGGGTGGCT  859
      ||||||||||||
seq2  ACACGGGTGGCT  862