BAC Information

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BAC

Clone NameB6Ng01-018J01
ChromosomeY (Build37)17 (Build37)
Map Location 1,120,617 - 1,121,08159,878,676 - 59,879,575
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018J01.bB6Ng01-018J01.g
ACCDH851929DH851930
length728894
definitionDH851929|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J01, 5' end.DH851930|Mus musculus domesticus DNA, BAC clone: B6Ng01-018J01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,617 - 1,121,081)(59,878,676 - 59,879,575)
sequence
gaattcttttttttttaaattagggattttcctcatttacatttccaatg
ctatcccaaaagtcccccatatccttcccccccactcccctacccaccca
ctcccattttttggccctggcgttcccctgtactggggcatataaagttt
gcaagtccaatgggcctctctttccagtgatggcaaactaggccatcttt
tgatacatatgcagctagagtcaagagctccggggaactggttagttcat
aatgttgttgtacctatagggttacagatctctttagctccttggatact
ttctctagctcctccatcgggggccctgtgattcatctgacagtgagctg
actgtgagcatccacttatgtgtttgctaggccccggcctagtctcacaa
gagacagctatatcagggtcctttcagcaaactcttgctagtgtatgcaa
tggggtcatcgtttggaggctgattatgggatggatccctggatatggca
gtctctagatggtccattcttttgtctcagttccaaacattgtctctgaa
actcctttcattggtgattgttcccaattctaagtagggtcaaagtgtcc
acactttggtcttcattcttcttcagtttcatgtgtttttgcgaattgta
tcttatatctcgggtatactaaagttttctgggctaatatccacttatca
gtgagtacatataaattgaatttttttg
gaattccttctgcaagacagatttaagattgagaacagtccatgttaagt
aaataaattattgtaataatttattgtagataaattttatgtatgatatc
aaatgtatataataactactctggcttcaaaatttctaaatcaccaacat
ttacaactaatttttcattaatagcaggtaaaaggaggaacataatttga
tagctcatatagattctttttgttatcgtacaaaactagaatatggatga
actcataatatgggcatgaaaataatacttttgaattcttgtacattatc
ataaaactggtaaatatagtgcactaattcttcttttacctataatgacc
accgtctgttttcttgtttgtttgtttgtttgtttgttttaggctcctca
taggaaagaacattattgtgaagtaatgttaggatgtttactcaaagaag
aattagtgaaagataattgaattaggagaaccagataaagaatgaaatat
acaaatgcctatgcacttccctttccagctaggattctgtcatagttagg
aatggtcaggaagaatgtggactctacttgatataatttctctgagagat
gagcttcagagagatatctatatcatcattggctggagagtgctttgttg
gtgcttaacacttgatgggaaaaaaatgaacagactctcaagatctcata
gcctcatagaaaagagacattaaacaatttgttgtgataaaataagaact
caagagatatttttggtagttatagctaaattaagcatgattgaagaaaa
agttttaaggtaataagtagtgttgattacccagaaacttaaccggaatt
atttattgattttttccttttgcttggaatttttaaattatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120617_1121081
seq2: B6Ng01-018J01.b_75_542

seq1  CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACC  50
      ||||||||||||||||||||||| |||||||||||||||||||  || ||
seq2  CTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATATCCTTCC-CC  49

seq1  CCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTG  100
      ||||||||||| |||||||||||||  |||||||||||||  ||||||||
seq2  CCCACTCCCCTACCCACCCACTCCCATTTTTTGGCCCTGGCGTTCCCCTG  99

seq1  TACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGA  149

seq1  TGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTC  200
      ||||  ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCAAACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTC  199

seq1  CGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATC  250
      ||||| ||||||||| |||||| ||||||  ||||||||||||  |||||
seq2  CGGGGAACTGGTTAGTTCATAATGTTGTTGTACCTATAGGGTTACAGATC  249

seq1  CCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATG  300
       |||||||||||||| ||||||||||||||||||||| ||| ||||| ||
seq2  TCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTCCATCGGGGGCCCTGTG  299

seq1  ATCCATC---CA-TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGG  346
      || ||||   || | |||||||||||||||||||||| |||||||||| |
seq2  ATTCATCTGACAGTGAGCTGACTGTGAGCATCCACTTATGTGTTTGCTAG  349

seq1  GCCCCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAATAA  396
      |||||||| ||||||||||||||||||||| ||| |  ||||||||  ||
seq2  GCCCCGGCCTAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAA  399

seq1  AATCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGG  446
      | ||||||||||||||||||||| |||| |||||||| ||||||||||||
seq2  ACTCTTGCTAGTGTATGCAATGGGGTCATCGTTTGGAGGCTGATTATGGG  449

seq1  GTGGATCCCTGGCTATGGC  465
       ||||||||||| ||||||
seq2  ATGGATCCCTGGATATGGC  468

seq1: chr17_59878676_59879575
seq2: B6Ng01-018J01.g_70_963

seq1  GAATTCCTTCTGCAAGACAGATTTAAGATTGAGAACAGTCCATGTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGCAAGACAGATTTAAGATTGAGAACAGTCCATGTTAAGT  50

seq1  AAATAAATTATTGTAATAATTTATTGTAGATAAATTTTATGTATGATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTATTGTAATAATTTATTGTAGATAAATTTTATGTATGATATC  100

seq1  AAATGTATATAATAACTACTCTGGCTTCAAAATTTCTAAATCACCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATATAATAACTACTCTGGCTTCAAAATTTCTAAATCACCAACAT  150

seq1  TTACAACTAATTTTTCATTAATAGCAGGTAAAAGGAGGAACATAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTAATTTTTCATTAATAGCAGGTAAAAGGAGGAACATAATTTGA  200

seq1  TAGCTCATATAGATTCTTTTTGTTATCGTACAAAACTAGAATATGGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATATAGATTCTTTTTGTTATCGTACAAAACTAGAATATGGATGA  250

seq1  ACTCATAATATGGGCATGAAAATAATACTTTTGAATTCTTGTACATTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAATATGGGCATGAAAATAATACTTTTGAATTCTTGTACATTATC  300

seq1  ATAAAACTGGTAAATATAGTGCACTAATTCTTCTTTTACCTATAATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGGTAAATATAGTGCACTAATTCTTCTTTTACCTATAATGACC  350

seq1  ACCGTCTGTTTTCTTGTTTGTTTGTTTGTTTGTTTGTTTTAGGCTCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTGTTTTCTTGTTTGTTTGTTTGTTTGTTTGTTTTAGGCTCCTCA  400

seq1  TAGGAAAGAACATTATTGTGAAGTAATGTTAGGATGTTTACTCAAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGAACATTATTGTGAAGTAATGTTAGGATGTTTACTCAAAGAAG  450

seq1  AATTAGTGAAAGATAATTGAATTAGGAGAACCAGATAAAGAATGAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTGAAAGATAATTGAATTAGGAGAACCAGATAAAGAATGAAATAT  500

seq1  ACAAATGCCTATGCACTTCCCTTTCCAGCTAGGATTCTGTCATAGTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCTATGCACTTCCCTTTCCAGCTAGGATTCTGTCATAGTTAGG  550

seq1  AATGGTCAGGAAGAATGTGGACTCTACTTGATATAATTTCTCTGAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCAGGAAGAATGTGGACTCTACTTGATATAATTTCTCTGAGAGAT  600

seq1  GAGCTTCAGAGAGATATCTATATCATCATTGGCTGGAGAGTGCTTTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAGAGAGATATCTATATCATCATTGGCTGGAGAGTGCTTTGTTG  650

seq1  GTGCTTAACACTTGATGGGAAAAAAATGAACAGACTCTCAAGATCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAACACTTGATGGGAAAAAAATGAACAGACTCTCAAGATCTCATA  700

seq1  GCCTCATAGAAAAGAGACATTAAACAATTTGTTGTGATAAAATAAGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATAGAAAAGAGACATTAAACAATTTGTTGTGATAAAATAAGAACT  750

seq1  CAAGAGATATTTTTGGTAGTTATAGCTAAAATTAAGCATGATTGAAGAAA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAGAGATATTTTTGGTAGTTATAGCT-AAATTAAGCATGATTGAAGAAA  799

seq1  AAGTTTTAAGGTAATAAGTAGTGTTGATTACCCAGTAAACTTAACCGGAA  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGTTTTAAGGTAATAAGTAGTGTTGATTACCCAG-AAACTTAACCGGAA  848

seq1  TTTATTTATTGATTTTTTTTCCTTTTGCTTTGTAATTTTTAAATTATTTT  900
       |||||||||||  |||||||||||||| ||| |||||||||||||||||
seq2  -TTATTTATTGA--TTTTTTCCTTTTGC-TTGGAATTTTTAAATTATTTT  894