BAC Information

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BAC

Clone NameB6Ng01-018N21
Chromosome17 (Build37)
Map Location 77,097,653 - 77,238,343
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043885, LOC100043886
Downstream geneEG624348, LOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018N21.bB6Ng01-018N21.g
ACCDH852138DH852139
length8781,185
definitionDH852138|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N21, 5' end.DH852139|Mus musculus domesticus DNA, BAC clone: B6Ng01-018N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,097,653 - 77,098,511)(77,237,149 - 77,238,343)
sequence
gaattcagtcatttctatgatgatattttcatgttcttcacttgactatt
gattaagaaaaaaatagagagggttgtgtggttattttccagtagctcag
agtatttaccaaattaatggctggatacatttatgaaatgagaaataagc
acttttcatattaaacctaaatggaaacaataagcaaacaaaaaagaatg
aacacaaggaatttgctataaactaaagggttctctacagtaagaaaaca
gtgattgtcccttttttatgtgtttatccattcatatattcaacaatttt
atgtacttgttatgcatctatgaattctctacagtctgaatatcaaaaat
taatataaataagaataaaagataaaatataacacaatcacagcctttat
tatacttgtagcctagcaatagaaacagatcaacacaaaccagaaatatt
ccatggcatgttagataattataagtgttatgtagagaaataagacaaga
gaattgaagtgataaataaagagatattttaggtgagttttaaagacaaa
atacatgtataaaaatgaagtcacaacatattctttcaaaactaagaaac
cggactggaacgtaactcagcagttaaaagcactggcttctcttccagag
accctgaggtcaattccaagcaaccacattgtgattcacaaccattctgt
aatggaatccaatatcctttctggtgtgtctaaagatagctatgatatat
atatatcatatacatacacacatatgtgtgtatatgtatatttatgtgta
tctgaagatagctatgagatatatgtatatatatatatatatatatatgt
agggggggggacagagaatatatatata
gaattcatttatgtttttctaattaccaattttatagcactttgatatat
tttatgaatggacaattagctttccatttaatttgttaatatgtcaattc
ttgtgacagagttggaaaagaaaactggtggtcataattttactgctgta
gagaaaaacaatcttattcatatgagacagataagctcacaagtatgatt
tctaaaagctgttttaatcagttgaatagacgcacttctattggtttcaa
taatttctaataagtaagagagagttactgggaaatgacaatgttctcag
acagatgaggatatgagcaatgttctgaggcctatttaggatcagggcaa
ccaagcaaccaagataattcattactttgctaagtatactgttccaaata
actcatgaatcaggggctttggtggaacattgaagaacattttttttttc
tgtgtagaatacattctgcctgctagggctcagaacgattgttagcgtcc
gatgcatacatgaagtctatactccagcacactgcagagaatgtgccagt
gccaccaaatggaaggatggaggagcaactagaagagagtattatggaat
gagtggaagaagagtcatattccaaagaccattattacagaaaacataaa
aatattctcataatatgatatttctacatcttgtttaaattacctatgct
aaactcaaatgactcaatatttaatgtagtatttcatattctattcatgt
tacttttatataatatatttggcagattattattttctttcttttgacag
ttacactcacatgcacatgcatatacacatcacacattgaattttgcata
ttttcatgccagataacatatttccattaagtgattaattaattaatttc
ctttatatccacattgcaacttcccctccctcctctcctcccatcccact
tctcaccccctttccttccattccttccttctttctctcaagaagagaat
gactcctgtggaccacaaggaaccatggccatatcaagtgctagtaggac
tggttgcatccttctactgaggcctgataaggttctccaagtcggaaaag
tatcccaatgcagacaaacgagtccagaacgccccgcggttgggatccac
tgatgactaacctgccagtttgtgtcatatatgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77097653_77098511
seq2: B6Ng01-018N21.b_45_922

seq1  GAATTCAGTCATTTCTATGATGATATTTTCATGTTCTTCACTTGACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCATTTCTATGATGATATTTTCATGTTCTTCACTTGACTATT  50

seq1  GATTAAGAAAAAAATAGAGAGGGTTGTGTGGTTATTTTCCAGTAGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGAAAAAAATAGAGAGGGTTGTGTGGTTATTTTCCAGTAGCTCAG  100

seq1  AGTATTTACCAAATTAATGGCTGGATACATTTATGAAATGAGAAATAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACCAAATTAATGGCTGGATACATTTATGAAATGAGAAATAAGC  150

seq1  ACTTTTCATATTAAACCTAAATGGAAACAATAAGCAAACAAAAAAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATATTAAACCTAAATGGAAACAATAAGCAAACAAAAAAGAATG  200

seq1  AACACAAGGAATTTGCTATAAACTAAAGGGTTCTCTACAGTAAGAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAGGAATTTGCTATAAACTAAAGGGTTCTCTACAGTAAGAAAACA  250

seq1  GTGATTGTCCCTTTTTTATGTGTTTATCCATTCATATATTCAACAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTCCCTTTTTTATGTGTTTATCCATTCATATATTCAACAATTTT  300

seq1  ATGTACTTGTTATGCATCTATGAATTCTCTACAGTCTGAATATCAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTGTTATGCATCTATGAATTCTCTACAGTCTGAATATCAAAAAT  350

seq1  TAATATAAATAAGAATAAAAGATAAAATATAACACAATCACAGCCTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAATAAGAATAAAAGATAAAATATAACACAATCACAGCCTTTAT  400

seq1  TATACTTGTAGCCTAGCAATAGAAACAGATCAACACAAACCAGAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTGTAGCCTAGCAATAGAAACAGATCAACACAAACCAGAAATATT  450

seq1  CCATGGCATGTTAGATAATTATAAGTGTTATGTAGAGAAATAAGACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCATGTTAGATAATTATAAGTGTTATGTAGAGAAATAAGACAAGA  500

seq1  GAATTGAAGTGATAAATAAAGAGATATTTTAGGTGAGTTTTAAAGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAAGTGATAAATAAAGAGATATTTTAGGTGAGTTTTAAAGACAAA  550

seq1  ATACATGTATAAAAATGAAGTCACAACATATTCTTTCAAAACTAAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTATAAAAATGAAGTCACAACATATTCTTTCAAAACTAAGAAAC  600

seq1  CGGACTGGAACGTAACTCAGCAGTTAAAAGCACTGGCTTCTCTTCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTGGAACGTAACTCAGCAGTTAAAAGCACTGGCTTCTCTTCCAGAG  650

seq1  ACCCTGAGGTCAATTCCAAGCAACCACATTGTGATTCACAACCATTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGGTCAATTCCAAGCAACCACATTGTGATTCACAACCATTCTGT  700

seq1  AATGGAATCCAATATCCTTTCTGGTGTGTCTAAAGATAGCTATGATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCCAATATCCTTTCTGGTGTGTCTAAAGATAGCTATGATATAT  750

seq1  ATATATCATATACATACACACATATGTGTGTATATGTATATTTATGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATATACATACACACATATGTGTGTATATGTATATTTATGTGTA  800

seq1  TCTGAAGATAGCTATGAGATATATATATATATATATATATATATATAT--  848
      |||||||||||||||||||||||| |||||||||||||||||||||||  
seq2  TCTGAAGATAGCTATGAGATATATGTATATATATATATATATATATATGT  850

seq1  -----------------ATATATATATA  859
                       |||||||||||
seq2  AGGGGGGGGGACAGAGAATATATATATA  878

seq1: chr17_77237149_77238343
seq2: B6Ng01-018N21.g_67_1251 (reverse)

seq1  GGCATATATGCAACAAACTTGCAGCTTAGTCTACAAATGAGACTCCCAAC  50
      ||||||||||  ||||||| |||| ||||||  ||   | |  |||||||
seq2  GGCATATATGACACAAACTGGCAGGTTAGTCATCA---GTGGATCCCAAC  47

seq1  AGCAGGGGCTGTCTCTGACTCTGTTGTCTGCATTTGGATACTTTTCCCCT  100
       || |||||  |||  |||||  ||||||||||| ||||||||||||   
seq2  CGC-GGGGCGTTCT-GGACTCGTTTGTCTGCATTGGGATACTTTTCC---  92

seq1  TACTT-GAGAACCTTATCTAGCCTCAGTAGAA-GATGCAACCAGTCCTAC  148
       |||| ||||||||||||  |||||||||||| |||||||||||||||||
seq2  GACTTGGAGAACCTTATCAGGCCTCAGTAGAAGGATGCAACCAGTCCTAC  142

seq1  TAGCACTTGATAT-GCCATGGTATCTTGGTGTCCACAGGAGTCATCCTCT  197
      ||||||||||||| ||||||||  ||||  ||||||||||||||| ||||
seq2  TAGCACTTGATATGGCCATGGTTCCTTGTGGTCCACAGGAGTCATTCTCT  192

seq1  TCTTTGAGGAGA-AAAGGAGGAAGGAATGGAAGGAAAGGGGGTGAGAAGT  246
      ||||    |||| |||| ||||||||||||||||||||||||||||||||
seq2  TCTT----GAGAGAAAGAAGGAAGGAATGGAAGGAAAGGGGGTGAGAAGT  238

seq1  GGGGATTGGGAGGAGAGGAGGGAGGGGAAGTTGCAATGTGGATATAAAGG  296
      |||   ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGG--ATGGGAGGAGAGGAGGGAGGGGAAGTTGCAATGTGGATATAAAGG  286

seq1  AAATTAATTAATTAATCACTTAATGGAAATATGTTATCTGGCATGAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAATTAATCACTTAATGGAAATATGTTATCTGGCATGAAAAT  336

seq1  ATGCAAAATTCAATGTGTGATGTGTATATGCATGTGCATGTGAGTGTAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATTCAATGTGTGATGTGTATATGCATGTGCATGTGAGTGTAAC  386

seq1  TGTCAAAAGAAAGAAAATAATAATCTGCCAAATATATTATATAAAAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAGAAAGAAAATAATAATCTGCCAAATATATTATATAAAAGTAA  436

seq1  CATGAATAGAATATGAAATACTACATTAAATATTGAGTCATTTGAGTTTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAGAATATGAAATACTACATTAAATATTGAGTCATTTGAGTTTA  486

seq1  GCATAGGTAATTTAAACAAGATGTAGAAATATCATATTATGAGAATATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGTAATTTAAACAAGATGTAGAAATATCATATTATGAGAATATTT  536

seq1  TTATGTTTTCTGTAATAATGGTCTTTGGAATATGACTCTTCTTCCACTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTTCTGTAATAATGGTCTTTGGAATATGACTCTTCTTCCACTCA  586

seq1  TTCCATAATACTCTCTTCTAGTTGCTCCTCCATCCTTCCATTTGGTGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATACTCTCTTCTAGTTGCTCCTCCATCCTTCCATTTGGTGGCA  636

seq1  CTGGCACATTCTCTGCAGTGTGCTGGAGTATAGACTTCATGTATGCATCG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACATTCTCTGCAGTGTGCTGGAGTATAGACTTCATGTATGCATCG  686

seq1  GACGCTAACAATCGTTCTGAGCCCTAGCAGGCAGAATGTATTCTACACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTAACAATCGTTCTGAGCCCTAGCAGGCAGAATGTATTCTACACAG  736

seq1  AAAAAAAAAATGTTCTTCAATGTTCCACCAAAGCCCCTGATTCATGAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATGTTCTTCAATGTTCCACCAAAGCCCCTGATTCATGAGTT  786

seq1  ATTTGGAACAGTATACTTAGCAAAGTAATGAATTATCTTGGTTGCTTGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAACAGTATACTTAGCAAAGTAATGAATTATCTTGGTTGCTTGGT  836

seq1  TGCCCTGATCCTAAATAGGCCTCAGAACATTGCTCATATCCTCATCTGTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGATCCTAAATAGGCCTCAGAACATTGCTCATATCCTCATCTGTC  886

seq1  TGAGAACATTGTCATTTCCCAGTAACTCTCTCTTACTTATTAGAAATTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACATTGTCATTTCCCAGTAACTCTCTCTTACTTATTAGAAATTAT  936

seq1  TGAAACCAATAGAAGTGCGTCTATTCAACTGATTAAAACAGCTTTTAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAATAGAAGTGCGTCTATTCAACTGATTAAAACAGCTTTTAGAA  986

seq1  ATCATACTTGTGAGCTTATCTGTCTCATATGAATAAGATTGTTTTTCTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTTGTGAGCTTATCTGTCTCATATGAATAAGATTGTTTTTCTCT  1036

seq1  ACAGCAGTAAAATTATGACCACCAGTTTTCTTTTCCAACTCTGTCACAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTAAAATTATGACCACCAGTTTTCTTTTCCAACTCTGTCACAAG  1086

seq1  AATTGACATATTAACAAATTAAATGGAAAGCTAATTGTCCATTCATAAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGACATATTAACAAATTAAATGGAAAGCTAATTGTCCATTCATAAAA  1136

seq1  TATATCAAAGTGCTATAAAATTGGTAATTAGAAAAACATAAATGAATTC  1195
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAAGTGCTATAAAATTGGTAATTAGAAAAACATAAATGAATTC  1185