BAC Information

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BAC

Clone NameB6Ng01-019M01
Chromosome17 (Build37)
Map Location 79,078,098 - 79,229,128
singlet/doubletdoublet
Overlap geneStrn, Heatr5b
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019M01.bB6Ng01-019M01.g
ACCDH852748DH852749
length574881
definitionDH852748|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M01, 5' end.DH852749|Mus musculus domesticus DNA, BAC clone: B6Ng01-019M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,228,555 - 79,229,128)(79,078,098 - 79,078,973)
sequence
gaattcttgattcagggcttctccgtagtctctctgtttggagataagct
agttaggttggagaattgtacctctgtatgttcttattaattgtgacatt
ggtttgacaacatggtcctaaagctttgctttgtggtcacgtgcagtctc
aagggcgaagtgagatcttaatgagtctgcagaaagtgctgactggactg
ggcggcgcagcagcttcctctcaccgcgacatttacaagaatgctcgatc
cctcctgaccgacaggtcgatggctgtccgatgtgcagtggccaaggtta
gtacccagccagtgtgtaacattgtcccttatggcatttgctctgaaata
gctaattttctcttaaattacgagcttttttggtttgtttgcgcacgtta
gttgcattttctagaattatacagatggcagcgtgtggcacggacttctg
agtggatgtgtggcttctttcttgaagtacagctgttttgagatttatgt
tcatgtgtcagaagctcacaccttcctgttgtgtagtcccgcgtggttgt
gtggatgtgtggaagtgtggatgt
gaattcattccccagcccccacatcacagctcacaactctgtgcctccag
atgcagaggatctaatgctctctctggctccatggacactaggcacacac
atggtgcacaaacaggcagagcctccacaggctaccctgtcctcacagtt
ccacaggtaaacgtaccacccactcctgagttaggaatcaagctgacgtc
agaggggccaccactagctgtcaagatggaaagtctttgtcctcactgcc
agacaaaaagggcagggaaacgccagaaatagtacctggaacctctaatt
aaatgtctcggagtattttgggctttagttattactaaacatagtattaa
gtaacaaaagcaactccgagggcaaacatatctaggtaaccttagacaaa
atgagacagccattgggtccacaccatcatcacagtcatgcctaacaagt
gttgcattttatataaacaaatcaaaaacccctgtgttttcttatgctta
ggcaccaaagaaaaaggagctgtggtcacaaaagaaatattatcagtaag
taggaaggggtaaaatttgtaatagcaatactttccttccccaaacagat
tctgtacttaagaaattaaggagaaaggaacggcaaatggagaccatcac
aggaaactacaatcagacacaacagagatcaacagatggggagggagccc
agccccaactgatagcccctgcaccgcagctcctgcatcacaattcctgc
atgcccgcttgctcgggggaacatggcagttgcgagtggagattttaggg
aattgaatgcaaggaggaagtccactgttaagcacgtgaaaccgggctct
cctagaaatggctgcaaacaagatcagaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79228555_79229128
seq2: B6Ng01-019M01.b_40_613 (reverse)

seq1  ACATCCACACTTCCACACATCCACACAACCACGCGGGACTACACAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACACTTCCACACATCCACACAACCACGCGGGACTACACAACAGG  50

seq1  AAGGTGTGAGCTTCTGACACATGAACATAAATCTCAAAACAGCTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGAGCTTCTGACACATGAACATAAATCTCAAAACAGCTGTACTT  100

seq1  CAAGAAAGAAGCCACACATCCACTCAGAAGTCCGTGCCACACGCTGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAGCCACACATCCACTCAGAAGTCCGTGCCACACGCTGCCAT  150

seq1  CTGTATAATTCTAGAAAATGCAACTAACGTGCGCAAACAAACCAAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATTCTAGAAAATGCAACTAACGTGCGCAAACAAACCAAAAAAG  200

seq1  CTCGTAATTTAAGAGAAAATTAGCTATTTCAGAGCAAATGCCATAAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAATTTAAGAGAAAATTAGCTATTTCAGAGCAAATGCCATAAGGGA  250

seq1  CAATGTTACACACTGGCTGGGTACTAACCTTGGCCACTGCACATCGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTACACACTGGCTGGGTACTAACCTTGGCCACTGCACATCGGACA  300

seq1  GCCATCGACCTGTCGGTCAGGAGGGATCGAGCATTCTTGTAAATGTCGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGACCTGTCGGTCAGGAGGGATCGAGCATTCTTGTAAATGTCGCG  350

seq1  GTGAGAGGAAGCTGCTGCGCCGCCCAGTCCAGTCAGCACTTTCTGCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGAAGCTGCTGCGCCGCCCAGTCCAGTCAGCACTTTCTGCAGAC  400

seq1  TCATTAAGATCTCACTTCGCCCTTGAGACTGCACGTGACCACAAAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAGATCTCACTTCGCCCTTGAGACTGCACGTGACCACAAAGCAAA  450

seq1  GCTTTAGGACCATGTTGTCAAACCAATGTCACAATTAATAAGAACATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGACCATGTTGTCAAACCAATGTCACAATTAATAAGAACATACA  500

seq1  GAGGTACAATTCTCCAACCTAACTAGCTTATCTCCAAACAGAGAGACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAATTCTCCAACCTAACTAGCTTATCTCCAAACAGAGAGACTAC  550

seq1  GGAGAAGCCCTGAATCAAGAATTC  574
      ||||||||||||||||||||||||
seq2  GGAGAAGCCCTGAATCAAGAATTC  574

seq1: chr17_79078098_79078973
seq2: B6Ng01-019M01.g_69_949

seq1  GAATTCATTCCCCAGCCCCCACATCACAGCTCACAACTCTGTGCCTCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCCCAGCCCCCACATCACAGCTCACAACTCTGTGCCTCCAG  50

seq1  ATGCAGAGGATCTAATGCTCTCTCTGGCTCCATGGACACTAGGCACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAGGATCTAATGCTCTCTCTGGCTCCATGGACACTAGGCACACAC  100

seq1  ATGGTGCACAAACAGGCAGAGCCTCCACAGGCTACCCTGTCCTCACAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCACAAACAGGCAGAGCCTCCACAGGCTACCCTGTCCTCACAGTT  150

seq1  CCACAGGTAAACGTACCACCCACTCCTGAGTTAGGAATCAAGCTGACGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTAAACGTACCACCCACTCCTGAGTTAGGAATCAAGCTGACGTC  200

seq1  AGAGGGGCCACCACTAGCTGTCAAGATGGAAAGTCTTTGTCCTCACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCCACCACTAGCTGTCAAGATGGAAAGTCTTTGTCCTCACTGCC  250

seq1  AGACAAAAAGGGCAGGGAAACGCCAGAAATAGTACCTGGAACCTCTAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAAGGGCAGGGAAACGCCAGAAATAGTACCTGGAACCTCTAATT  300

seq1  AAATGTCTCGGAGTATTTTGGGCTTTAGTTATTACTAAACATAGTATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTCGGAGTATTTTGGGCTTTAGTTATTACTAAACATAGTATTAA  350

seq1  GTAACAAAAGCAACTCCGAGGGCAAACATATCTAGGTAACCTTAGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAAGCAACTCCGAGGGCAAACATATCTAGGTAACCTTAGACAAA  400

seq1  ATGAGACAGCCATTGGGTCCACACCATCATCACAGTCATGCCTAACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGCCATTGGGTCCACACCATCATCACAGTCATGCCTAACAAGT  450

seq1  GTTGCATTTTATATAAACAAATCAAAAACCCCTGTGTTTTCTTATGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATTTTATATAAACAAATCAAAAACCCCTGTGTTTTCTTATGCTTA  500

seq1  GGCACCAAAGAAAAAGGAGCTGTGGTCACAAAAGAAATATTATCAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAAAGAAAAAGGAGCTGTGGTCACAAAAGAAATATTATCAGTAAG  550

seq1  TAGGAAGGGGTAAAATTTGTAATAGCAATACTTTCCTTCCCCAAACAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGGTAAAATTTGTAATAGCAATACTTTCCTTCCCCAAACAGAT  600

seq1  TCTGTACTTAAGAAATTAAGGAGAAAGGAACGGCAAATGGAGACCATCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTAAGAAATTAAGGAGAAAGGAACGGCAAATGGAGACCATCAC  650

seq1  AGGAAACTACAATCAGACACAACAGAGATCAACAGAT-GGGAGGGAGCCC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAAACTACAATCAGACACAACAGAGATCAACAGATGGGGAGGGAGCCC  700

seq1  AGCCCCAACTGATAG-CCCTGCACCGCAGCTCCTGCATCACAATTCCTGC  748
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCCCAACTGATAGCCCCTGCACCGCAGCTCCTGCATCACAATTCCTGC  750

seq1  ATGCCCGCTTGCTC-GGGGAACATGGCAG-TGCGAGTGGAGATCGTAGGG  796
      |||||||||||||| |||||||||||||| |||||||||||||  |||||
seq2  ATGCCCGCTTGCTCGGGGGAACATGGCAGTTGCGAGTGGAGATTTTAGGG  800

seq1  AATTGAATGCAAGGAGGAAGTCCACTGTAAAGCACGTGAAACC-GGCTCT  845
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AATTGAATGCAAGGAGGAAGTCCACTGTTAAGCACGTGAAACCGGGCTCT  850

seq1  CCTAGAAATGGCTGCAAACAAGACCAGAACA  876
      ||||||||||||||||||||||| |||||||
seq2  CCTAGAAATGGCTGCAAACAAGATCAGAACA  881