BAC Information

Click to search

BAC

Clone NameB6Ng01-020J12
Chromosome17 (Build37)2 (Build37)
Map Location 78,011,812 - 78,012,925132,091,371 - 132,091,425
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG624348, LOC545234
Downstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020J12.bB6Ng01-020J12.g
ACCDH853351DH853352
length1,098955
definitionDH853351|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J12, 5' end.DH853352|Mus musculus domesticus DNA, BAC clone: B6Ng01-020J12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,011,812 - 78,012,925)(132,091,371 - 132,091,425)
sequence
gaattcagagatatagttacaatagctaaggccacccttcctcagcacac
agcaggatatgacacatcaccacctcactccaattactctcttgtttcca
ggttttctcactctcctctttggcacattcctcattaattaattttctcc
atttagtgcaaaagcttgaatacaatagcccccatgatttcctgctgtat
tttgtcttttacaatgaaaatgttcaagcaagtccacctctccctaacct
ttcccttcataatcaagttggcattctcttggtcttcacagaggccaagg
aggagtttctatgccctgctttttcctgctgagagaacaaatgaagggag
agtagctgcttcaagcactaagcccccttaggctgtggatcctcagcatg
gaaatggcccagttattgacacatgaagagacatgtcactgtttttctga
caggattttcctttgtctccaggtgtacacctttcttttagcactaggtt
gagaagaggcttttgtaagcagaacatattctttaagaagagtatttatt
tgttccttcagagttccctaggaattctgttcactagagtaagagcaaaa
aaattaatttttcatcaagcctttgaattccatgaacaaactctattata
atatctatgaatcttataaacttaaagatggtgtgtgtgtttgtgtatgt
gataatatttaaccattgaaatggaaataaatgaataaaacaattgaaat
ggatgaattttaatagccagcagattttaaaactatcagattgttttaaa
cgctttaaagtaggtctatattctttcctctgactttccaaagtcttcta
aagtgcaaagtaatttaattatctctgtacctaattctgtcttgacagta
ttgataggcattttcctattaaggatatagtgtcacctttcttgatttgg
agctgctgcagatctaaacctgaactacatagtgacccagagctgtctca
ctgtgcatcgttgggaaacaagtatctagtcagttcttctgtgactgtga
ttcttatttatacactaatcatgattcctgggatttagttacatctgt
gaattctgtcagctgataaacaacttcagcaaactggccagatataaaat
tagctcaaacaaatcagtagacttcttatactcaaaggataaacaagctg
agaaagaatttagggaaatgacacccttcccaacagtcacaaacaatata
aagtatcttagtgtaactctaagctaacaaatgaaagatctatatgacaa
aacttcaagactctgaagaaagaaattgaagaatgcctcagaagatgaaa
agatctcctatgctcaagaattggaaggattaacctagcaaaagtggcca
tattgccaaaaccaatctacagattcaatgtaatccccatcaaaattcca
actcagttcttcatagagctagaaagaacaattctccaatacacctggaa
taacaaaaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaaaaaagccaaaataccaaaaactattcttgt
ggataaaagaacttctggggggaatcagcatcccggacctcaagctgtgc
tacagagcaattgtgataaaactgtatgatatcagtacagtaacagacag
gtagatcagtggaatagaactgaagacccagaaatgaacccatgaaccta
tggtcacataatctttgacaaaggacctaaaaccattcagtggaaaaatg
acagcattttcaacaaatggtgctggttcttttggctactagcatgcaga
agaatggaaatcgatccattcttatctccttgtacaaagttaaagtccaa
gtggatcaaggaccttcatgtaaaaccagatacactgaaactaatagaaa
agaaagtgggggaaaagcctcaatcacgtggccagagaagaaaatatcct
gatcagaatacaatagcttatgccctagatcagaactgaaaatggtactc
ataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78011812_78012925
seq2: B6Ng01-020J12.b_43_1140 (reverse)

seq1  ACAGATGTAACATAATACAAGAAAATCCAATTGAATTTTAAGTGTATAGA  50
      |||||||||||  ||| | ||  ||||       ||  | |||||||| |
seq2  ACAGATGTAACTAAATCCCAG-GAATC-------ATGATTAGTGTATAAA  42

seq1  TAAAGAATCACAGTCACAGAAGAAACTGACCTAAGATTACTTGTTTCCCA  100
      | |||||||||||||||||||| |||||||   ||| |||||||||||||
seq2  T-AAGAATCACAGTCACAGAAG-AACTGAC--TAGA-TACTTGTTTCCCA  87

seq1  ACGATGCACAGTGAGACAGCTCTGGGTCACTATGTAGTTCAGGTTTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGCACAGTGAGACAGCTCTGGGTCACTATGTAGTTCAGGTTTAGAT  137

seq1  CCTGCAGCAGCCTCCAAATCAAGAAAGGTGACACTATATCCTTAATAGGA  200
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -CTGCAGCAG-CTCCAAATCAAGAAAGGTGACACTATATCCTTAATAGGA  185

seq1  AAATGCCTATCAATACTGTCAAGACAGAATTAGGTACAGAGATAATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCTATCAATACTGTCAAGACAGAATTAGGTACAGAGATAATTAAA  235

seq1  TTTACTTTGCACTTTAGAAGACTTTGGAAAGTCAGAGGAAAGAATATAGA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTACTTTGCACTTTAGAAGACTTTGGAAAGTCAGAGGAAAGAATATAGA  284

seq1  CCTACTTTAAAGCGTTTAAAACAATCTGATAGTTTTAAAATCTGCTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTAAAGCGTTTAAAACAATCTGATAGTTTTAAAATCTGCTGGCT  334

seq1  ATTAAAATTCATCCATTTCAATTGTTTTATTCATTTATTTCCATTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATTCATCCATTTCAATTGTTTTATTCATTTATTTCCATTTCAAT  384

seq1  GGTTAAATATTATCACATACACAAACACACACACCATCTTTAAGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATATTATCACATACACAAACACACACACCATCTTTAAGTTTATA  434

seq1  AGATTCATAGATATTATAATAGAGTTTGTTCATGGAATTCAAAGGCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATAGATATTATAATAGAGTTTGTTCATGGAATTCAAAGGCTTGA  484

seq1  TGAAAAATTAATTTTTTTGCTCTTACTCTAGTGAACAGAATTCCTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTAATTTTTTTGCTCTTACTCTAGTGAACAGAATTCCTAGGGA  534

seq1  ACTCTGAAGGAACAAATAAATACTCTTCTTAAAGAATATGTTCTGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAGGAACAAATAAATACTCTTCTTAAAGAATATGTTCTGCTTAC  584

seq1  AAAAGCCTCTTCTCAACCTAGTGCTAAAAGAAAGGTGTACACCTGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCTCTTCTCAACCTAGTGCTAAAAGAAAGGTGTACACCTGGAGAC  634

seq1  AAAGGAAAATCCTGTCAGAAAAACAGTGACATGTCTCTTCATGTGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAATCCTGTCAGAAAAACAGTGACATGTCTCTTCATGTGTCAAT  684

seq1  AACTGGGCCATTTCCATGCTGAGGATCCACAGCCTAAGGGGGCTTAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCCATTTCCATGCTGAGGATCCACAGCCTAAGGGGGCTTAGTGC  734

seq1  TTGAAGCAGCTACTCTCCCTTCATTTGTTCTCTCAGCAGGAAAAAGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGCTACTCTCCCTTCATTTGTTCTCTCAGCAGGAAAAAGCAGG  784

seq1  GCATAGAAACTCCTCCTTGGCCTCTGTGAAGACCAAGAGAATGCCAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAACTCCTCCTTGGCCTCTGTGAAGACCAAGAGAATGCCAACTT  834

seq1  GATTATGAAGGGAAAGGTTAGGGAGAGGTGGACTTGCTTGAACATTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAAGGGAAAGGTTAGGGAGAGGTGGACTTGCTTGAACATTTTCA  884

seq1  TTGTAAAAGACAAAATACAGCAGGAAATCATGGGGGCTATTGTATTCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAGACAAAATACAGCAGGAAATCATGGGGGCTATTGTATTCAAG  934

seq1  CTTTTGCACTAAATGGAGAAAATTAATTAATGAGGAATGTGCCAAAGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCACTAAATGGAGAAAATTAATTAATGAGGAATGTGCCAAAGAGG  984

seq1  AGAGTGAGAAAACCTGGAAACAAGAGAGTAATTGGAGTGAGGTGGTGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGAAAACCTGGAAACAAGAGAGTAATTGGAGTGAGGTGGTGATG  1034

seq1  TGTCATATCCTGCTGTGTGCTGAGGAAGGGTGGCCTTAGCTATTGTAACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATCCTGCTGTGTGCTGAGGAAGGGTGGCCTTAGCTATTGTAACT  1084

seq1  ATATCTCTGAATTC  1114
      ||||||||||||||
seq2  ATATCTCTGAATTC  1098

seq1: chr2_132091371_132091425
seq2: B6Ng01-020J12.g_472_538 (reverse)

seq1  ------------TTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCT  38
                   ||||||||||||||||||||| |||||||||||||||
seq2  TTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50

seq1  TTCTTTCTTTTTTTTTT  55
      |||||||||||||||||
seq2  TTCTTTCTTTTTTTTTT  67