BAC Information

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BAC

Clone NameB6Ng01-021M21
Chromosome17 (Build37)
Map Location 82,688,519 - 82,773,278
singlet/doubletdoublet
Overlap geneLOC668836
Upstream geneLOC100043704, Slc8a1, EG668832, LOC100043707, LOC625467
Downstream geneEG433141, EG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M21.bB6Ng01-021M21.g
ACCDH854209DH854210
length1,1481,015
definitionDH854209|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M21, 5' end.DH854210|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,688,519 - 82,689,691)(82,772,271 - 82,773,278)
sequence
gaattccaagctagcatatctgctctatctcctatgggatgatctgtgct
gacttgaaattcgaccaagttcccatcagcaaacagatcttcaattaatt
gtggccttttgaccctcgacactggagctttcagaaacatgatcaatgcc
tgcctcattataaattacttagtttctgtcattcacacagagaaacataa
aatggattaggacccctttaatatcccagcagtagatctgtgtctccttt
gttctggaatatgctttatttttccattaatgtcaaatttgcatctcgtc
aggacttccatctcaccaagtcaaaaatcagtgattagcaaggaaagtgt
ctaggcacagcagaccctgagaccagaagtcacaaagataacacaatgac
aaatatgattttctacacaaagaacaaaacactcctcagggggagaactg
gctcctgcaggagagggtcagctgcagaagctgcttgctgaagtcttaca
gatcaaaatcatgaatcagccaagctaccactctatgcctgtcagcacaa
cttttcataggaatgagttccatttaaacagaaatggcaatgtaccatgc
ttcattttgtcactgatgttgacaaagaagctataaaacttgaacttgag
ctgggcctggcatcttttgaaagaattacaaagtatcaatgagtgaatat
atatactgggctgtgtttcagactgagcaatgtaatttactctgtgggag
tcatgaaagcaaaattagaaagcaatgaaggctgtgactggtcacagagg
cctgtctgtcctcctgtttgattgctttgcttttcatttgctgaagtata
acctagggcattatagccaactgtctctttggtagaaatatgttcttgtc
actggcaaatacattttcttttctgaaacagacatactggacacgagtac
agttcattccgagcacaaatacactgacatactagaagtttaagacatgt
attttacactttgacataacatagatttaaagggattaacttgatgctta
attagacccatatatagtatagttagagttgtttctttctacaattacta
agggacagttcagaaatactattttccctaaaaacctttatgattttg
gaattctttaaagtgttattttagtttgatttctattgttgtgataaaac
acaatgctcaacagaaatttgggcaggaaagggatgatgtagcttacagg
taatggtccataatcatgaggaaacccaaagcaggccctgaaacagagac
tatggaggaatgctgtttacaggcctgtattccatggcttgtccttaagg
gccacaccagatctcaacaatgctatatttggaaaaaatttcaacatgac
tttcagagtagacaaacaacttaatccataacaaatccttgcagcaataa
aaatgcacatgtgtttgtttatgttcttgaagtgccatttatgagattta
gccaaatttataatatgattctaacaattgcttttttcattcctctatgc
acaactatattttaggttgaactatctcatagtgcagtcaagactaggaa
agaaaatgactacatgaagaagaaaatacgttgcattgtttattgatgta
tttagagacaagattattgagcaatccccgtggctgccctcaccaaaggt
ttaaatgttctgagcttttcctgcctttttcatacttttctatacaaagt
caaaatgacttagaatagttatttgtcacttgggaaattttatcgtgaaa
tttaggtagctgctaagcaagtgacacaggcaatgcttttgttcacatta
ctccagttgtactgatttcaaggattactggaattacttaaataactgtt
cagactgtagagctttatgaagatcaaataaggtattgcatatggatgtg
ttttaaaaactgaattttgttactgggactgcaaactggtccaccaactc
tggaatcaatctggaggttcctcagaaaattgcaaatgtatctacttgaa
gactacaacactcttggatatatccaaaagatgccccaccatgccacagg
gcacgtgttccactatattcatagcagccttatttgtgatagccagagct
agaaacacctcgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82688519_82689691
seq2: B6Ng01-021M21.b_46_1193

seq1  GAATTCCAAGCTAGCATATCTGCTCTATCTCCTATGGGATGATCTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCTAGCATATCTGCTCTATCTCCTATGGGATGATCTGTGCT  50

seq1  GACTTGAAATTCGACCAAGTTCCCATCAGCAAACAGATCTTCAATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAATTCGACCAAGTTCCCATCAGCAAACAGATCTTCAATTAATT  100

seq1  GTGGCCTTTTGACCCTCGACACTGGAGCTTTCAGAAACATGATCAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTGACCCTCGACACTGGAGCTTTCAGAAACATGATCAATGCC  150

seq1  TGCCTCATTATAAATTACTTAGTTTCTGTCATTCACACAGAGAAACATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTATAAATTACTTAGTTTCTGTCATTCACACAGAGAAACATAA  200

seq1  AATGGATTAGGACCCCTTTAATATCCCAGCAGTAGATCTGTGTCTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTAGGACCCCTTTAATATCCCAGCAGTAGATCTGTGTCTCCTTT  250

seq1  GTTCTGGAATATGCTTTATTTTTCCATTAATGTCAAATTTGCATCTCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGAATATGCTTTATTTTTCCATTAATGTCAAATTTGCATCTCGTC  300

seq1  AGGACTTCCATCTCACCAAGTCAAAAATCAGTGATTAGCAAGGAAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCATCTCACCAAGTCAAAAATCAGTGATTAGCAAGGAAAGTGT  350

seq1  CTAGGCACAGCAGACCCTGAGACCAGAAGTCACAAAGATAACACAATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCACAGCAGACCCTGAGACCAGAAGTCACAAAGATAACACAATGAC  400

seq1  AAATATGATTTTCTACACAAAGAACAAAACACTCCTCAGGGGGAGAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGATTTTCTACACAAAGAACAAAACACTCCTCAGGGGGAGAACTG  450

seq1  GCTCCTGCAGGAGAGGGTCAGCTGCAGAAGCTGCTTGCTGAAGTCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCAGGAGAGGGTCAGCTGCAGAAGCTGCTTGCTGAAGTCTTACA  500

seq1  GATCAAAATCATGAATCAGCCAAGCTACCACTCTATGCCTGTCAGCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAATCATGAATCAGCCAAGCTACCACTCTATGCCTGTCAGCACAA  550

seq1  CTTTTCATAGGAATGAGTTCCATTTAAACAGAAATGGCAATGTACCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATAGGAATGAGTTCCATTTAAACAGAAATGGCAATGTACCATGC  600

seq1  TTCATTTTGTCACTGATGTTGACAAAGAAGCTATAAAACTTGAACTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGTCACTGATGTTGACAAAGAAGCTATAAAACTTGAACTTGAG  650

seq1  CTGGGCCTGGCATCTTTTGAAAGAATTACAAAGTATCAATGAGTGAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGCATCTTTTGAAAGAATTACAAAGTATCAATGAGTGAATAT  700

seq1  ATATACTGGGCTGTGTTTCAGACTGAGCAATGTAATTTACTCTGTGGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTGGGCTGTGTTTCAGACTGAGCAATGTAATTTACTCTGTGGGAG  750

seq1  TCATGAAAGCAAAATTAGAAAGCAATGAAGGCTGTGACTGGTCACAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAAGCAAAATTAGAAAGCAATGAAGGCTGTGACTGGTCACAGAGG  800

seq1  CCTGTCTGTCCTCCTGTTTGATTGCTTTGCTTTTCATTTGCTGAAGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTCCTCCTGTTTGATTGCTTTGCTTTTCATTTGCTGAAGTATA  850

seq1  ACCTAGGGCATTATAGCCAACTGTCTCTTTGGTAGAAATATGTTCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCATTATAGCCAACTGTCTCTTTGGTAGAAATATGTTCTTGTC  900

seq1  ACTGGCAAATACATTTTCTTTTCTGAAACAGAACATACTGGACACGAGTA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGGCAAATACATTTTCTTTTCTGAAACAG-ACATACTGGACACGAGTA  949

seq1  CAGTTCAATTCCGAAGCAACAAATACACTGACATACTAGAAGTTTAAAGA  1000
      |||||| |||||| ||| ||||||||||||||||||||||||||| ||||
seq2  CAGTTC-ATTCCG-AGC-ACAAATACACTGACATACTAGAAGTTT-AAGA  995

seq1  CATGTATTTTACACTTTTGACAATAACATAGAATTAAAGGGAAATATTAC  1050
      |||||||||||||| |||||| |||||||||| |||||||||    | ||
seq2  CATGTATTTTACAC-TTTGAC-ATAACATAGATTTAAAGGGA---TTAAC  1040

seq1  TTGATGCTTATATAGACCCATATATAAGTATAAGGTAGAAGTTGTTTCTT  1100
      ||||||||||  ||||||||||||| ||||| || ||| |||||||||||
seq2  TTGATGCTTAATTAGACCCATATAT-AGTAT-AGTTAG-AGTTGTTTCTT  1087

seq1  TCCTACAAATTTACCTTAGGGAAACAAGTTCAGAAATTACCTTATTTTCC  1150
      | ||||||  ||| || |||||    |||||||||| |||  ||||||||
seq2  T-CTACAA--TTA-CTAAGGGA---CAGTTCAGAAA-TAC--TATTTTCC  1127

seq1  CTAAAAAGAGCTTTATGATTTTG  1173
      ||||||  | |||||||||||||
seq2  CTAAAA--ACCTTTATGATTTTG  1148

seq1: chr17_82772271_82773278
seq2: B6Ng01-021M21.g_66_1068 (reverse)

seq1  TCTAGCTTCTGGCTATCACAAATAAGGCTGCTATGAATATAGTGGAACAC  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGC-TCTGGCTATCACAAATAAGGCTGCTATGAATATAGTGGAACAC  49

seq1  GTGCCCCTGTGGCATGGTGGGGCATCTTTTGGATATATTCCAAAGAGTGT  100
      ||| ||||||||||||||||||||||||||||||||||  | ||||||||
seq2  GTG-CCCTGTGGCATGGTGGGGCATCTTTTGGATATAT--CCAAGAGTGT  96

seq1  TGTAGTCTTCAAGTAGATACATTTGCAATTTTCTGAGGAACCTCCAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTTCAAGTAGATACATTTGCAATTTTCTGAGGAACCTCCAGATT  146

seq1  GATTTCCAGAGTTGGTGGACCAGTTTGCAGTCCCAGTAACAAAATTCAGT  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TTCCAGAGTTGGTGGACCAGTTTGCAGTCCCAGTAACAAAATTCAGT  195

seq1  TTTTAAAACACATCCATATGCAATACCTTATTTGATCTTCATAAAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACACATCCATATGCAATACCTTATTTGATCTTCATAAAGCTCT  245

seq1  ACAGTCTGAACAGTTATTTAAGTAATTCCAGTAATCCTTGAAATCAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGAACAGTTATTTAAGTAATTCCAGTAATCCTTGAAATCAGTAC  295

seq1  AACTGGAGTAATGTGAACAAAAGCATTGCCTGTGTCACTTGCTTAGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTAATGTGAACAAAAGCATTGCCTGTGTCACTTGCTTAGCAGC  345

seq1  TACCTAAATTTCACGATAAAATTTCCCAAGTGACAAATAACTATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAATTTCACGATAAAATTTCCCAAGTGACAAATAACTATTCTAAG  395

seq1  TCATTTTGACTTTGTATAGAAAAGTATGAAAAAGGCAGGAAAAGCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGACTTTGTATAGAAAAGTATGAAAAAGGCAGGAAAAGCTCAGA  445

seq1  ACATTTAAACCTTTGGTGAGGGCAGCCACGGGGATTGCTCAATAATCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAACCTTTGGTGAGGGCAGCCACGGGGATTGCTCAATAATCTTG  495

seq1  TCTCTAAATACATCAATAAACAATGCAACGTATTTTCTTCTTCATGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATACATCAATAAACAATGCAACGTATTTTCTTCTTCATGTAGT  545

seq1  CATTTTCTTTCCTAGTCTTGACTGCACTATGAGATAGTTCAACCTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTCCTAGTCTTGACTGCACTATGAGATAGTTCAACCTAAAAT  595

seq1  ATAGTTGTGCATAGAGGAATGAAAAAAGCAATTGTTAGAATCATATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTGCATAGAGGAATGAAAAAAGCAATTGTTAGAATCATATTATA  645

seq1  AATTTGGCTAAATCTCATAAATGGCACTTCAAGAACATAAACAAACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCTAAATCTCATAAATGGCACTTCAAGAACATAAACAAACACAT  695

seq1  GTGCATTTTTATTGCTGCAAGGATTTGTTATGGATTAAGTTGTTTGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTTTATTGCTGCAAGGATTTGTTATGGATTAAGTTGTTTGTCTA  745

seq1  CTCTGAAAGTCATGTTGAAATTTTTTCCAAATATAGCATTGTTGAGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGTCATGTTGAAATTTTTTCCAAATATAGCATTGTTGAGATCT  795

seq1  GGTGTGGCCCTTAAGGACAAGCCATGGAATACAGGCCTGTAAACAGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCCCTTAAGGACAAGCCATGGAATACAGGCCTGTAAACAGCATT  845

seq1  CCTCCATAGTCTCTGTTTCAGGGCCTGCTTTGGGTTTCCTCATGATTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGTCTCTGTTTCAGGGCCTGCTTTGGGTTTCCTCATGATTATG  895

seq1  GACCATTACCTGTAAGCTACATCATCCCTTTCCTGCCCAAATTTCTGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTACCTGTAAGCTACATCATCCCTTTCCTGCCCAAATTTCTGTTG  945

seq1  AGCATTGTGTTTTATCACAACAATAGAAATCAAACTAAAATAACACTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTGTTTTATCACAACAATAGAAATCAAACTAAAATAACACTTTA  995

seq1  AAGAATTC  1008
      ||||||||
seq2  AAGAATTC  1003