BAC Information

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BAC

Clone NameB6Ng01-021M23
Chromosome17 (Build37)
Map Location 35,996,399 - 35,997,438
singlet/doubletsinglet
Overlap geneMdc1
Upstream geneCfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5
Downstream geneNrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021M23.bB6Ng01-021M23.g
ACCDH854213DH854214
length9951,028
definitionDH854213|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M23, 5' end.DH854214|Mus musculus domesticus DNA, BAC clone: B6Ng01-021M23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctgggggaacgagagtaccagtgagtatagct
ttacgaggtaagcctggccttgaactttctaaggaaattcaagacagtct
atcagaagtaaagtggaaaatgtttggctttgaattttttctagtgttag
aagcccttttgttccttttcacatgttatcaagtggttaaggcagggaaa
attctagaggaaattcaggacaagctatcagaagtaaagtggggagagag
agtaggaacaaagaggaaatatggtacacaaaataagtatacaggccttt
ccaagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgg
agagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatt
agcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcg
gggagccagctcttagtagctctgaagcaggtgaagaatcctcctctgag
gaaacagactgggaggaagaagcagcccattaccagccagctaattggtc
aagaaaaaagccaaaagcggctggcgaaggccagtttgctgattggcctc
agggcagtcggcttcaaggtccgccctatgcggagtccccgccctgcgta
gtgcgtcagcaatgcgcagagaggcagtgcgcagagaggcagtgcgcaga
ctcattcattcccagagaggaacaaaggaaaatacaacaggcattttccg
gtctttgaaggagccgagggtaggcgtgttccacgctccggtagaatact
tacaaattaaagaaattgccgagtcggtccgtaaatacggaaccaatgct
aattttaccttggtgcagttagacaggctcgccggcatggcactaacttc
ttgctgactggcaaacggttgtaaaagccgctctccctagtatgggcaaa
tatatggaatggagagcgcttttggcacgaagctgcacagcgcag
gaattcacaaaggtaagagcaaattgatgcttgccagaccatgagtacac
agaagctgttcaaggggtctagtgttcccctgtggggagttgaaagactt
ggaatcagaaagaggaagtgattgtacataatgcagaatattaagtacta
atgtataaaagggttgggttttttttgctttatgaatttcacttcaataa
aaaagttgcttactttatattttcctgcagtgaattatgtataagcttag
agaactattggtggttggcacaaatgaggcccaactcatgacaggcaatt
gctttacaactcattcacaccccagttatatgcttgatctttaaggtttt
tcttttttggtggtgccgggggttgaatctaaggcttcctgaaatgctgc
tcaaaagcttcaccgctaagcagtagtcctagaccattgttcatttgatg
cctgtggaggccagaagtcagccttggatgtctttcctcgggccactttg
tttttctttgagatagggaatctcactgggacatggggcacccttaggct
gggctggatggacagtgagccttaggcatttgcctccctagagcttgcat
tatgatttaaggaggaaacaggttaaagagaaaccacacatagtcaactg
cttgtttcccacctataagctcttctgggaccacttcacagtgtctagaa
gatcagtggagccaggatgtgatgctaggccataatcccagcacttggag
gcagaggcaagaggatctgctcaagatgattctcagctacataacagcaa
gttcgaagccatcttgcgctacatgaagattctgccattaacgcgtgtac
caccacctggctagattctgccattaaaaatatatatacatttttttttt
tgagcagtccagtggggctgaaagagctcatggttgagggtactgggcct
cttccgaagacttggttcaatacagcacccacatggcagctcaccactgt
actccagatctgaccctccatagttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35996399_35997438
seq2: B6Ng01-021M23.g_68_1095

seq1  GAATTCACAAAGGTAAGAGCAAATTGATGCTTGCCAGACCATGAGTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGGTAAGAGCAAATTGATGCTTGCCAGACCATGAGTACAC  50

seq1  AGAAGCTGTTCAAGGGGTCTAGTGTTCCCCTGTGGGGAGTTGAAAGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGTTCAAGGGGTCTAGTGTTCCCCTGTGGGGAGTTGAAAGACTT  100

seq1  GGAATCAGAAAGAGGAAGTGATTGTACATAATGCAGAATATTAAGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGAAAGAGGAAGTGATTGTACATAATGCAGAATATTAAGTACTA  150

seq1  ATGTATAAAAGGGTTGGGTTTTTTTTGCTTTATGAATTTCACTTCAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAAAGGGTTGGGTTTTTTTTGCTTTATGAATTTCACTTCAATAA  200

seq1  AAAAGTTGCTTACTTTATATTTTCCTGCAGTGAATTATGTATAAGCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGCTTACTTTATATTTTCCTGCAGTGAATTATGTATAAGCTTAG  250

seq1  AGAACTATTGGTGGTTGGCACAAATGAGGCCCAACTCATGACAGGCAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATTGGTGGTTGGCACAAATGAGGCCCAACTCATGACAGGCAATT  300

seq1  GCTTTACAACTCATTCACACCCCAGTTATATGCTTGATCTTTAAGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACAACTCATTCACACCCCAGTTATATGCTTGATCTTTAAGGTTTT  350

seq1  TCTTTTTTGGTGGTGCCGGGGGTTGAATCTAAGGCTTCCTGAAATGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGGTGGTGCCGGGGGTTGAATCTAAGGCTTCCTGAAATGCTGC  400

seq1  TCAAAAGCTTCACCGCTAAGCAGTAGTCCTAGACCATTGTTCATTTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTTCACCGCTAAGCAGTAGTCCTAGACCATTGTTCATTTGATG  450

seq1  CCTGTGGAGGCCAGAAGTCAGCCTTGGATGTCTTTCCTCGGGCCACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAGGCCAGAAGTCAGCCTTGGATGTCTTTCCTCGGGCCACTTTG  500

seq1  TTTTTCTTTGAGATAGGGAATCTCACTGGGACATGGGGCACCCTTAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTGAGATAGGGAATCTCACTGGGACATGGGGCACCCTTAGGCT  550

seq1  GGGCTGGATGGACAGTGAGCCTTAGGCATTTGCCTCCCTAGAGCTTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGATGGACAGTGAGCCTTAGGCATTTGCCTCCCTAGAGCTTGCAT  600

seq1  TATGATTTAAGGAGGAAACAGGTTAAAGAGAAACCACACATAGTCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTAAGGAGGAAACAGGTTAAAGAGAAACCACACATAGTCAACTG  650

seq1  CTTGTTTCCCACCTATAAGCTCTTCTGGGACCACTTCACAGTGTCTAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTCCCACCTATAAGCTCTTCTGGGACCACTTCACAGTGTCTAGAA  700

seq1  GATCAGTGGAGCCAGGATGTGATGCTAGGCCATAATCCCAGCACTTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGAGCCAGGATGTGATGCTAGGCCATAATCCCAGCACTTGGAG  750

seq1  GCAGAGGCAAGAGGATCTGCTCAAGATGATTCTCAGCTACATAACAGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAAGAGGATCTGCTCAAGATGATTCTCAGCTACATAACAGCAA  800

seq1  GTTCGAAGCCATCTTGCGCTACATGAAGATTCTGCCATTAAGGCGTGTAC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTTCGAAGCCATCTTGCGCTACATGAAGATTCTGCCATTAACGCGTGTAC  850

seq1  CACCACCTGGCTAGATTCTGCCATTAAAAATATATATACATTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CACCACCTGGCTAGATTCTGCCATTAAAAATATATATACA--TTTTTTTT  898

seq1  TTTGAGCAGTCCAAGTGGGGGCTGGAGAGAGCTCAGTGGTTGAGGGTACT  950
      |||||||||||| ||| |||||| || |||||||| ||||||||||||||
seq2  TTTGAGCAGTCC-AGT-GGGGCT-GAAAGAGCTCA-TGGTTGAGGGTACT  944

seq1  GGG-CTCTTCCAGAGGACCTGGGTTCAAATACCAGCACCCACATGGCAGC  999
      ||| ||||||| || || || ||||| |||| ||||||||||||||||||
seq2  GGGCCTCTTCC-GAAGA-CTTGGTTC-AATA-CAGCACCCACATGGCAGC  990

seq1  TCACCACTGTTACTCCAAGATCTGACACTCACATAGTTGCA  1040
      ||||||||| |||||| ||||||||| ||| ||||||||||
seq2  TCACCACTG-TACTCC-AGATCTGACCCTC-CATAGTTGCA  1028