BAC Information

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BAC

Clone NameB6Ng01-025O13
Chromosome17 (Build37)
Map Location 52,861,838 - 53,004,639
singlet/doubletdoublet
Overlap genenone
Upstream geneSatb1, EG628919, LOC672987, EG328839
Downstream geneKcnh8, LOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025O13.bB6Ng01-025O13.g
ACCDH857106DH857107
length1,1591,157
definitionDH857106|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O13, 5' end.DH857107|Mus musculus domesticus DNA, BAC clone: B6Ng01-025O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,003,458 - 53,004,639)(52,861,838 - 52,863,017)
sequence
gaattcatgatgagattatgtgatgatcatcagaactatagaaaatttta
tttaatcctgtaccatgtacattaattttttttggaactgtaagagctaa
gaggctcagtcctcaatgtacatattaaaatggtggtgattaagaatgtt
gagacaaaaacacaaataaaggtaggtgtgtattggagagacagatgagt
tcttgaatctggatttgtcaaaactgaaagacaatatattgtttggtatg
ctattctatgtctccatattccttcggtatgcaccagtctcctaatggac
tccatctcttttatggaaattgtgatccttgtacgtttttctctggtatc
aattttctcttctgcctgcagataggaacatttcatgatgtcatctcccc
cctgctttctgttagcacaccaggacatatggcttatggcctttgtgttc
tttctgtggatggaaagttttttgagatctctcacttcttcccttgggag
ccttagcgatttttccaaaggtagaaagggatgtgttaatgttctgtgta
ggcagtcgtgggtaatagaagagcttttcggaaccacagattgaactcca
gcaacttcttggtgcttcagtttccaggaatagaactctagttactttct
tattgacttcgcaagagattttatataggtcagatctacactgctgagaa
atcaaagatcttactactgttatttttttatgaggatctacttcttcatg
tgattttctttgacatcttttaaaattgttagataaactaggcatcccaa
gtcacctgtttaaccataccacttagttagtgcctgacttccattttcag
tcacagacaccagctcttttgcctacagattcatatgtggcaactctaat
gcccctttaaagggtaataggagtagagaaaggtgatataatctcagcct
ggcacacaaaagctggtaactcacatgtcacccaagtgagcacttgttat
tcagagtctatcaggtcacagtttggaagcagcttgaatgatggagtcaa
ccctagcaccgcagcctatttcctttgaggtccacccatttcctctcctg
ctaggtacccatctcctccgggcctggtcatttactcaatagccctttgc
ccttgccat
gaattccaggatttgtactctgaaaggcatatgttccagtggagatagca
gggtaaaagaatgacactttctaaacagagagaccattcatgtggccaga
acaccaagctatccaaagcacagacagccactacattctctttggaattg
aaatgcaattatatgttgaggacatgtgctaaatataaacagaggacaag
tatattcctttattcttgtttattttttgtggcatattggctggaagaat
tagctactcaaacacactataatccttaattaaaatacacagatctgatg
gcttagtaatactttatcatcttttcagcttattataattctaaacacca
gtcttttcttatatttgcaaacaattgcaaagacactatggaaattaatt
taaagaacatgccattaagagatatgcagaataaaacaatattgcattta
cattaaaaatgaggaaaggggtagtagagtacctgttggtttcagctgtc
ccctttataacctagattcatgtctttgagaacagaagccttcattgagg
aatttcctttatcaggctggcctaggggcacatctattggggactgtcat
gattcctcattgatgcatgagtgccagttcagttaaagcagcaccatccc
tagctatgtgtgagtcagaaagtcagtcagcaagttatggtactcatcat
ttttgctgcaattcctgcatcaatgtccctcaataatggatcatgacctg
gaagtgtaagccaaataaaccctttcctcttgaaactgatttttgtcaga
atgattcactatagcaacagaaaggaaacttgagcataatggaaaataag
ccaacagaagataaaaaatgaggcttaatattttaaacattcaagttaga
agtttcttacttagagaattgtagaatagaaacagcacattgtatagaca
gatattttttaaaaatatagttaaccaaaattaacagctataacatttaa
aatattatacatttaggtattttctcataaaagatcacaattaagatatt
aagaagaatggtgttctgtactatcatggagaatgggggggataattcta
gtgatgatcagggttcccttaaagactattgttgatctaatgcagaagca
cctcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_53003458_53004639
seq2: B6Ng01-025O13.b_46_1204 (reverse)

seq1  ATGGCAAAGGGCAAAGGGCTAATGAGTAGATAGGACATGGCCAGAGAGAG  50
      ||||| ||||||||||||||| |||||| ||  |||  |||| |   |||
seq2  ATGGC-AAGGGCAAAGGGCTATTGAGTAAAT--GACCAGGCCCGGAGGAG  47

seq1  ATGGGTTAACACTTAGCAGGGAGAGAAAATGTGTGGACCTCAAAGGGAGA  100
      ||||||    || ||||| |||||| ||||| |||||||||||| ||| |
seq2  ATGGGT----ACCTAGCA-GGAGAGGAAATGGGTGGACCTCAAA-GGAAA  91

seq1  TAGGCTGCGGGTGCTTGAGGTGGTACTCCATCATTCAAGACTGCTTTTCA  150
      |||||||| |||||| | | ||  ||||||||||||||| ||||  ||| 
seq2  TAGGCTGC-GGTGCTAGGGTTG--ACTCCATCATTCAAG-CTGC--TTCC  135

seq1  AAGACTGTTGACCCTGATTAGACTTCTGATTAAACAATGTGCTTCACTTG  200
      || |||| ||| ||||| ||||| ||||| | ||||| |||| |||||||
seq2  AA-ACTG-TGA-CCTGA-TAGAC-TCTGAAT-AACAA-GTGC-TCACTTG  177

seq1  GGTGACATTGTGAGTTAACCAGCTTTTGTGTGCCAGGCTGGAGATTATAT  250
      ||||||| |||||||| |||||||||||||||||||||| ||||||||||
seq2  GGTGACA-TGTGAGTT-ACCAGCTTTTGTGTGCCAGGCT-GAGATTATAT  224

seq1  CACCTTTTCTCTACTCCTATTACCCCTTTAAAGGGGCATTAGAGTTGCCA  300
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACC-TTTCTCTACTCCTATTA-CCCTTTAAAGGGGCATTAGAGTTGCCA  272

seq1  CATATGAATCTGTAGGC-AAAGAGCTGGTGTCTGTGACTGAAAATGGAAG  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATATGAATCTGTAGGCAAAAGAGCTGGTGTCTGTGACTGAAAATGGAAG  322

seq1  TCAGGCACTAACT-AGTGGTATGGTT-AACAGGTGACTTGGGATGCCTAG  397
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TCAGGCACTAACTAAGTGGTATGGTTAAACAGGTGACTTGGGATGCCTAG  372

seq1  TTTATCTAACAATTTT-AAAGATGTCAAAGAAAATCACATGAAGAAGTAG  446
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTATCTAACAATTTTAAAAGATGTCAAAGAAAATCACATGAAGAAGTAG  422

seq1  ATCCTCAT-AAAAAATAACAGTAGTAAGATCTTTGATTTCTCAGCAGTGT  495
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATAAAAAAATAACAGTAGTAAGATCTTTGATTTCTCAGCAGTGT  472

seq1  AGATCTGACCTATATAAAATCTCTTGCGAAGTCAATAAGAAAGTAACTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGACCTATATAAAATCTCTTGCGAAGTCAATAAGAAAGTAACTAG  522

seq1  AGTTCTATTCCTGGAAACTGAAGCACCAAGAAGTTGCTGGAGTTCAATCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTCCTGGAAACTGAAGCACCAAGAAGTTGCTGGAGTTCAATCT  572

seq1  GTGGTTCCGAAAAGCTCTTCTATTACCCACGACTGCCTACACAGAACATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCCGAAAAGCTCTTCTATTACCCACGACTGCCTACACAGAACATT  622

seq1  AACACATCCCTTTCTACCTTTGGAAAAATCGCTAAGGCTCCCAAGGGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCCCTTTCTACCTTTGGAAAAATCGCTAAGGCTCCCAAGGGAAG  672

seq1  AAGTGAGAGATCTCAAAAAACTTTCCATCCACAGAAAGAACACAAAGGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGATCTCAAAAAACTTTCCATCCACAGAAAGAACACAAAGGCC  722

seq1  ATAAGCCATATGTCCTGGTGTGCTAACAGAAAGCAGGGGGGAGATGACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCATATGTCCTGGTGTGCTAACAGAAAGCAGGGGGGAGATGACAT  772

seq1  CATGAAATGTTCCTATCTGCAGGCAGAAGAGAAAATTGATACCAGAGAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGTTCCTATCTGCAGGCAGAAGAGAAAATTGATACCAGAGAAA  822

seq1  AACGTACAAGGATCACAATTTCCATAAAAGAGATGGAGTCCATTAGGAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTACAAGGATCACAATTTCCATAAAAGAGATGGAGTCCATTAGGAGA  872

seq1  CTGGTGCATACCGAAGGAATATGGAGACATAGAATAGCATACCAAACAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCATACCGAAGGAATATGGAGACATAGAATAGCATACCAAACAAT  922

seq1  ATATTGTCTTTCAGTTTTGACAAATCCAGATTCAAGAACTCATCTGTCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCTTTCAGTTTTGACAAATCCAGATTCAAGAACTCATCTGTCTC  972

seq1  TCCAATACACACCTACCTTTATTTGTGTTTTTGTCTCAACATTCTTAATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACACACCTACCTTTATTTGTGTTTTTGTCTCAACATTCTTAATC  1022

seq1  ACCACCATTTTAATATGTACATTGAGGACTGAGCCTCTTAGCTCTTACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATTTTAATATGTACATTGAGGACTGAGCCTCTTAGCTCTTACAG  1072

seq1  TTCCAAAAAAAATTAATGTACATGGTACAGGATTAAATAAAATTTTCTAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAAAATTAATGTACATGGTACAGGATTAAATAAAATTTTCTAT  1122

seq1  AGTTCTGATGATCATCACATAATCTCATCATGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGATGATCATCACATAATCTCATCATGAATTC  1159

seq1: chr17_52861838_52863017
seq2: B6Ng01-025O13.g_67_1223

seq1  GAATTCCAGGATTTGTACTCTGAAAGGCATATGTTCCAGTGGAGATAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATTTGTACTCTGAAAGGCATATGTTCCAGTGGAGATAGCA  50

seq1  GGGTAAAAGAATGACACTTTCTAAACAGAGAGACCATTCATGTGGCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAAGAATGACACTTTCTAAACAGAGAGACCATTCATGTGGCCAGA  100

seq1  ACACCAAGCTATCCAAAGCACAGACAGCCACTACATTCTCTTTGGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAGCTATCCAAAGCACAGACAGCCACTACATTCTCTTTGGAATTG  150

seq1  AAATGCAATTATATGTTGAGGACATGTGCTAAATATAAACAGAGGACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAATTATATGTTGAGGACATGTGCTAAATATAAACAGAGGACAAG  200

seq1  TATATTCCTTTATTCTTGTTTATTTTTTGTGGCATATTGGCTGGAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCTTTATTCTTGTTTATTTTTTGTGGCATATTGGCTGGAAGAAT  250

seq1  TAGCTACTCAAACACACTATAATCCTTAATTAAAATACACAGATCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACTCAAACACACTATAATCCTTAATTAAAATACACAGATCTGATG  300

seq1  GCTTAGTAATACTTTATCATCTTTTCAGCTTATTATAATTCTAAACACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAATACTTTATCATCTTTTCAGCTTATTATAATTCTAAACACCA  350

seq1  GTCTTTTCTTATATTTGCAAACAATTGCAAAGACACTATGGAAATTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTTATATTTGCAAACAATTGCAAAGACACTATGGAAATTAATT  400

seq1  TAAAGAACATGCCATTAAGAGATATGCAGAATAAAACAATATTGCATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACATGCCATTAAGAGATATGCAGAATAAAACAATATTGCATTTA  450

seq1  CATTAAAAATGAGGAAAGGGGTAGTAGAGTACCTGTTGGTTTCAGCTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAATGAGGAAAGGGGTAGTAGAGTACCTGTTGGTTTCAGCTGTC  500

seq1  CCCTTTATAACCTAGATTCATGTCTTTGAGAACAGAAGCCTTCATTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATAACCTAGATTCATGTCTTTGAGAACAGAAGCCTTCATTGAGG  550

seq1  AATTTCCTTTATCAGGCTGGCCTAGGGGCACATCTATTGGGGACTGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTTTATCAGGCTGGCCTAGGGGCACATCTATTGGGGACTGTCAT  600

seq1  GATTCCTCATTGATGCATGAGTGCCAGTTCAGTTAAAGCAGCACCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCATTGATGCATGAGTGCCAGTTCAGTTAAAGCAGCACCATCCC  650

seq1  TAGCTATGTGTGAGTCAGAAAGTCAGTCAGCAAGTTATGGTACTCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATGTGTGAGTCAGAAAGTCAGTCAGCAAGTTATGGTACTCATCAT  700

seq1  TTTTGCTGCAATTCCTGCATCAATGTCCCTCAATAATGGATCATGACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGCAATTCCTGCATCAATGTCCCTCAATAATGGATCATGACCTG  750

seq1  GAAGTGTAAGCCAAATAAACCCTTTCCTCTTGAAACTGATTTTTGTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAAGCCAAATAAACCCTTTCCTCTTGAAACTGATTTTTGTCAGA  800

seq1  ATGATTCACTATAGCAACAGAAAGGAAACTTGAGCATAATGGAAAATAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCACTATAGCAACAGAAAGGAAACTTGAGCATAATGGAAAATAAG  850

seq1  CCAACAGAAGAT-AAAAATGAGGCTTAATATTTTAAACATTCAAGTTAGA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAACAGAAGATAAAAAATGAGGCTTAATATTTTAAACATTCAAGTTAGA  900

seq1  AGTTTCTTACTTAGAGAA-TGTAGAATAAGAAACAGCACATTGTATAGAC  948
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  AGTTTCTTACTTAGAGAATTGTAGAAT-AGAAACAGCACATTGTATAGAC  949

seq1  AAGAATATTTTTTAAAAAATATAGTTAACCAAAATTAACAGCTATTAACA  998
      |   ||||||||| |||||||||||||||||||||||||||||| |||||
seq2  A--GATATTTTTT-AAAAATATAGTTAACCAAAATTAACAGCTA-TAACA  995

seq1  TTTAAAAATATTATACCATTTTAGGTATTTTCTCAATAAAAAGAATCACA  1048
      ||| ||||||||||||   ||||||||||||||| ||||||   ||||| 
seq2  TTT-AAAATATTATAC--ATTTAGGTATTTTCTC-ATAAAA--GATCAC-  1038

seq1  AATAAAGATAATTAAGAAGAAATGTGTTCTGGTACTAATCATGGAGAAAT  1098
      ||| ||||| |||||||||||  ||||||| ||||| ||||||||| |||
seq2  AATTAAGAT-ATTAAGAAGAATGGTGTTCT-GTACT-ATCATGGAG-AAT  1084

seq1  GGGTGTGATCATTCTAGGTTGAATGATTCATGGTTTCCTTTTAAAAGCAT  1148
      ||| | ||| |||||||  || |||| ||| |||| ||||   ||||  |
seq2  GGGGGGGATAATTCTAG--TG-ATGA-TCAGGGTTCCCTT---AAAGACT  1127

seq1  ATGTATAGATCATATGCAAGAAGCACCTCAAC  1180
      || | | ||||  |||| ||||||||||||||
seq2  AT-TGTTGATCTAATGC-AGAAGCACCTCAAC  1157