BAC Information

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BAC

Clone NameB6Ng01-026C24
Chromosome17 (Build37)
Map Location 33,919,359 - 34,040,155
singlet/doubletdoublet
Overlap geneAnkrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970
Upstream gene9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4
Downstream geneBC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026C24.bB6Ng01-026C24.g
ACCDH857303DH857304
length1,174793
definitionDH857303|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C24, 5' end.DH857304|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,919,359 - 33,920,548)(34,039,599 - 34,040,155)
sequence
gaattcatcttgagctacacaagtgagtttaagagagcctgggctactct
gagccaggtctccaaacaacaacagcaacaacaaaactggtggcacgcac
ctgtaaacccatcacgcaggacacaggggaatagtacaagctacaagcta
gcctgctctacatagtaagttacagaccagtcaacgctgaaacagcaaga
ccttgtttcaaaacaaaacaaaaacaattcatagttatgcatactttaac
tcccagcactgcagagcaagaagcaattggaggaagctctgtgagtttga
ggtcagcctggtctacatagtgaagttccaggccatccaggaagaagacc
ttgtcacaaaacaacaacaacaacaactaaaaaagccaggaggaactgga
aatctatcttaccagttaagagcatttacatcttttgcaggggatctaag
tccaacagctcacagtcacctataattccagctccaggagctatggtgac
tttgacctcctcaggcactcacacacatgcacacaatttaaaacagtcat
ttaaacatttaaaaagcaggctggagagatggttcagcagttaagagtac
tgactgctcttccaaaggtcctgagttaattcccagcaaccacatggtgg
cttacaaccatctgtaataggatctgataccctcttccggtgtgtctgaa
gacagctacaatgtactcatataaataaaataaatacatcttttttaaaa
aaaatttaaaaagcaaacaatctagagaacatcagcaaagatttcccttc
cacacccatccattcattcactcattccatacagcctagatcctgtactg
agttttttagtttgtgtataaatcctacctttgagcacgggagagggaca
aggcagagacaaagaggactggggtggggcagacagctttccttgtttat
gctgcctggttaagtttttattcaacaagtttgcattggtgttctttttc
tgacagttccctgaagctggcacagaaaacctgtctgacaagaagaacct
taggcaattgactgaaaaacctcaagttgagtcagcaaggctggagcagc
agcaaccttggatctgaaactgcatgcctcaggctgacatgcagccactg
cttgtaccttgaccacttggcctt
gaattccaaatgccacacaaatacagaaactatcagctgctgtcacaacc
atgcctctgctagagccgcggcaaatcctagtcagctgctgtggacagtc
tgaaacaaccctctatccccacctggggttaaaatggaaaacattccctt
ttctctttttgtaattttatttttatttgatgtgtattggtgttttacct
acatgttgtgtgagaccatcagacccccaggaactggagttacaggaagt
tatgagctgccatatgggtgctgagaatagaacccagggcctctggaaga
gcagccagtgctcttaactgctgggtcacagttcactccagccctgaagt
cacactcttataataacttctgggttttttttttttttttttttaagaaa
ccaaaattccagaattctcggtggccggtggcgcacgcctttaatcccag
catttgggaagtagaggcaggcggatttctgagttcaaggccaccctgct
ccacaaagtgagttccaggacagtcagggctatacagagaaaccctgtct
cgaaaaaccaaaaggaaaaaaaaaaaaaaaaaaaaaaaagaattctcact
acagtggagcccaccattaagggcactaccagggagaaagaggcaggtgg
atctttgaattcaaggccagcctggtctacatagagagttcccaggccaa
gaatggagaaacagagaagttaacttgagtcacagttataataatgttgc
acagagataaacaggatggaagccgggggcgggagggcggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33919359_33920548
seq2: B6Ng01-026C24.b_37_1210

seq1  GAATTCATCTTGAGCTACACAAGTGAGTTTAAGAGAGCCTGGGCTACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTGAGCTACACAAGTGAGTTTAAGAGAGCCTGGGCTACTCT  50

seq1  GAGCCAGGTCTCCAAACAACAACAGCAACAACAAAACTGGTGGCACGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGTCTCCAAACAACAACAGCAACAACAAAACTGGTGGCACGCAC  100

seq1  CTGTAAACCCATCACGCAGGACACAGGGGAATAGTACAAGCTACAAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCCATCACGCAGGACACAGGGGAATAGTACAAGCTACAAGCTA  150

seq1  GCCTGCTCTACATAGTAAGTTACAGACCAGTCAACGCTGAAACAGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCTACATAGTAAGTTACAGACCAGTCAACGCTGAAACAGCAAGA  200

seq1  CCTTGTTTCAAAACAAAACAAAAACAATTCATAGTTATGCATACTTTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCAAAACAAAACAAAAACAATTCATAGTTATGCATACTTTAAC  250

seq1  TCCCAGCACTGCAGAGCAAGAAGCAATTGGAGGAAGCTCTGTGAGTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTGCAGAGCAAGAAGCAATTGGAGGAAGCTCTGTGAGTTTGA  300

seq1  GGTCAGCCTGGTCTACATAGTGAAGTTCCAGGCCATCCAGGAAGAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCTGGTCTACATAGTGAAGTTCCAGGCCATCCAGGAAGAAGACC  350

seq1  TTGTCACAAAACAACAACAACAACAACTAAAAAAGCCAGGAGGAACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACAAAACAACAACAACAACAACTAAAAAAGCCAGGAGGAACTGGA  400

seq1  AATCTATCTTACCAGTTAAGAGCATTTACATCTTTTGCAGGGGATCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTTACCAGTTAAGAGCATTTACATCTTTTGCAGGGGATCTAAG  450

seq1  TCCAACAGCTCACAGTCACCTATAATTCCAGCTCCAGGAGCTATGGTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAGCTCACAGTCACCTATAATTCCAGCTCCAGGAGCTATGGTGAC  500

seq1  TTTGACCTCCTCAGGCACTCACACACATGCACACAATTTAAAACAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTCCTCAGGCACTCACACACATGCACACAATTTAAAACAGTCAT  550

seq1  TTAAACATTTAAAAAGCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTAAAAAGCAGGCTGGAGAGATGGTTCAGCAGTTAAGAGTAC  600

seq1  TGACTGCTCTTCCAAAGGTCCTGAGTTAATTCCCAGCAACCACATGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTCTTCCAAAGGTCCTGAGTTAATTCCCAGCAACCACATGGTGG  650

seq1  CTTACAACCATCTGTAATAGGATCTGATACCCTCTTCCGGTGTGTCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACCATCTGTAATAGGATCTGATACCCTCTTCCGGTGTGTCTGAA  700

seq1  GACAGCTACAATGTACTCATATAAATAAAATAAATACATCTTTTTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTACAATGTACTCATATAAATAAAATAAATACATCTTTTTTAAAA  750

seq1  AAAATTTAAAAAGCAAACAATCTAGAGAACATCAGCAAAGATTTCCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAAAGCAAACAATCTAGAGAACATCAGCAAAGATTTCCCTTC  800

seq1  CACACCCATCCATTCATTCACTCATTCCATACAGCCTAGATCCTGTACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCATCCATTCATTCACTCATTCCATACAGCCTAGATCCTGTACTG  850

seq1  AGTTTTTTAGTTTGTGTATAAATCCTACCTTTGAGCAGGGGAGAGGGACA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTTTTTTAGTTTGTGTATAAATCCTACCTTTGAGCACGGGAGAGGGACA  900

seq1  AGGCAGAGACAAAAGAGGACTGGGGTGGGGCAGACAGCTTTCCTTGTTTA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGAC-AAAGAGGACTGGGGTGGGGCAGACAGCTTTCCTTGTTTA  949

seq1  TGCTGCCTGGTTAAGTTTTTATTCAACAAGTTTGCATTGGTGTTCCTTTT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCTGCCTGGTTAAGTTTTTATTCAACAAGTTTGCATTGGTGTT-CTTTT  998

seq1  TCTGACAGTTCCCCTGAAGCCTGGCACAGAAAACCTGTCTGACAAGAAGA  1050
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  TCTGACAGTT-CCCTGAAG-CTGGCACAGAAAACCTGTCTGACAAGAAGA  1046

seq1  CCCTTAGGGCAAATTGACTGAAAAACCCCCAAGTTGAGTCAGCAGGGCTG  1100
       |||||||   |||||||||||||| || ||||||||||||||| |||| 
seq2  ACCTTAGG--CAATTGACTGAAAAA-CCTCAAGTTGAGTCAGCAAGGCT-  1092

seq1  GGAGCCAGCAGCAAACCTCTGGAATCTGAAACTGCATGCCTCAAGGCTGA  1150
      |||| ||||||| ||||| ||| ||||||||||||||||||| |||||||
seq2  GGAG-CAGCAGC-AACCT-TGG-ATCTGAAACTGCATGCCTC-AGGCTGA  1137

seq1  CATGCAGGCCACTGCTTGTACACTTGACCAGCTGGGCCTT  1190
      |||||| |||||||||||||| |||||||| || ||||||
seq2  CATGCA-GCCACTGCTTGTAC-CTTGACCA-CTTGGCCTT  1174

seq1: chr17_34039599_34040155
seq2: B6Ng01-026C24.g_297_855 (reverse)

seq1  CCTCCGCCCTCCCGCCCCC-GCCTCCATCCTGTTTATCTCTGTGCAACAT  49
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CCTCCGCCCTCCCGCCCCCGGCTTCCATCCTGTTTATCTCTGTGCAACAT  50

seq1  TATTATAACTGTGACTCAAGTTAACTTCTCTGTTTCTCCATTCTTGGCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAACTGTGACTCAAGTTAACTTCTCTGTTTCTCCATTCTTGGCCT  100

seq1  -GGAACTCTCTATGTAGACCAGGCTGGCCTTGAATTCAAAGATCCACCTG  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCTCTATGTAGACCAGGCTGGCCTTGAATTCAAAGATCCACCTG  150

seq1  CCTCTTTCTCCCTGGTAGTGCCCTTAATGGTGGGCTCCACTGTAGTGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTCCCTGGTAGTGCCCTTAATGGTGGGCTCCACTGTAGTGAGA  200

seq1  ATTCTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTGGTTTTTCGAGACAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTGGTTTTTCGAGACAGG  250

seq1  GTTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACTTTGTGGAGCAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCCCTGACTGTCCTGGAACTCACTTTGTGGAGCAGGG  300

seq1  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTACTTCCCAAATGCTGGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCAGAAATCCGCCTGCCTCTACTTCCCAAATGCTGGGAT  350

seq1  TAAAGGCGTGCGCCACCGGCCACCGAGAATTCTGGAATTTTGGTTTCTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGCGCCACCGGCCACCGAGAATTCTGGAATTTTGGTTTCTTA  400

seq1  AAAAAAAAAAAAAAAAAAACCCAGAAGTTATTATAAGAGTGTGACTTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAACCCAGAAGTTATTATAAGAGTGTGACTTCAG  450

seq1  GGCTGGAGTGAACTGTGACCCAGCAGTTAAGAGCACTGGCTGCTCTTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGTGAACTGTGACCCAGCAGTTAAGAGCACTGGCTGCTCTTCCA  500

seq1  GAGGCCCTGGGTTCTATTCTCAGCACCCATATGGCAGCTCATAACTTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGGGTTCTATTCTCAGCACCCATATGGCAGCTCATAACTTCCT  550

seq1  GTAACTCCA  557
      |||||||||
seq2  GTAACTCCA  559