BAC Information

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BAC

Clone NameB6Ng01-026N05
Chromosome17 (Build37)
Map Location 33,140,809 - 33,283,717
singlet/doubletdoublet
Overlap geneC920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472
Downstream geneLOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026N05.bB6Ng01-026N05.g
ACCDH857744DH857745
length1,110949
definitionDH857744|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N05, 5' end.DH857745|Mus musculus domesticus DNA, BAC clone: B6Ng01-026N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,282,590 - 33,283,717)(33,140,809 - 33,141,762)
sequence
gaattctttcctatgctgtttgcacacatccaggtcctctgacgcatgag
ttctttcatgaatctggaagaagtgctcactaaaagcttctgcacactgc
ttactttcataacatttatcttcagtttgtgtttttatatgcctcagaag
acactggggaaaactcaagttgtctctacagtccttacattcatacagtc
actttgcaagttcctgatattcatatggtttgtgtccattttgaaccctg
ataagtacatttaaggatgaattgaagacatttctacaaatatctctttc
acatggcttgaattcatgaggattatctttatacataaaaggattgagaa
cccagctgaaatttttacacattgactatcttctttgtgttcacaaagac
tcttttccacttgacttctgaaaaaatacaaagttttattattattttcc
aataggataatatttttaaacatgaatatatgaacattctacagtatggc
ttcatatacttattatcaatagtgatagtcctacagagtttttctttttc
cttttgttttgtttttttaaggtacataggtcttttgagacacaatatta
atctgtgccccagtggtagacaagcctatccttttccaatctttgggcgg
tgaaggcagaagaatcaaaaagttaaagcccaggtcaggttcataaccag
tttgaggctaacctaggcaacacaaaaaactatcactaaataaataaata
aataaataaataaataaataaataaatgggatagacaggtagatcagcac
ttgggagcatatactgctctcccctgagacctgaattcagttcctagcat
tcatgtcaggctgttcaaaatcacctgcaaccccaggcccagaaacctga
cattactggcctctgtgactcacatggatatattcatgaatatatgtgta
atttaaataaacaaacctgacattctggcctctgtgactcacatggataa
attcatgaatatatgtgtaatttaaaataaacaacatgtggtggtgacac
ctttattccagcacttgtgaggaaagccggaaatctctgggttcaaggcg
actgcttcag
gaattcacactggagagaaaccatatgtatgtaaggaatgtggaaaagca
tttaggatttccacatcccttcgtgaccatgagagaattcacactggaga
aaaaccttacatatgtaattattgtgggaaagcatttagggtctccacat
gccttcacaaacatgaacgagctcatgctgaaaagaaacccagtgggtag
aactgaagcccatatagatctttgatcaactgtcaggaaaagtgtatgca
gggtcagtcagatggctcagggataaaagcacttgccctaagcttggtag
ccatagttggaacctcagaacccatgtgaagagagagaactgaatttcca
aggtttgcctctgacttgtacatatgtgctgtcatttgcatgcataccct
cacatagatgtataaagaaataggataatttaaaatacctttttaaattt
tgttttgttttgagacagggtttcactgtgcagccccttggttgtcctgc
aactcactctgcagaccaggctggccttaaactcagaggtccccctgcct
ctgccttccgagtgttgagattaaaagtgtgcacgtccctgctgcctagc
tttaagatcattttaatgttgcttttgatttgtagttatttgtagttatg
tgtgggtatgtgcatgtgagggctggagcacacagcagtcagaggcatca
cattccccaggagctggagttacaggagccggtgaggtgtcccatgtgac
ggctgggaaatccagcttgggtcctccggagagcagtatattctgagcca
tctttctagtcttcataggtgtaattaaagacaaattgggaaagaaatag
ctggaatagaccttaagatgttaattttgacacatatgaaatgtgatgtt
ggaaaaaacgagttcatcaatgtgctaagcactttttttggaaattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33282590_33283717
seq2: B6Ng01-026N05.b_46_1155 (reverse)

seq1  CTGAAGACCAGTCTGGCCTTGAACCCAGAGATTCTCCTGCCTCTCCTCAC  50
      ||||||  |||||  |||||||||||||||||| ||| | || |||||||
seq2  CTGAAG--CAGTC--GCCTTGAACCCAGAGATT-TCC-GGCTTTCCTCAC  44

seq1  AAGTGCTGGGATTAAAGGTGTGCACCACCACCATGTTTGTTTTATTTTAA  100
      ||||||| ||| ||||||||| |||||||| ||||||   ||||||||||
seq2  AAGTGCT-GGAATAAAGGTGT-CACCACCA-CATGTT--GTTTATTTTAA  89

seq1  ATTACACATATATTCATGAATATATCCATGTGAGTTCACAGAGGCCAGGA  150
      ||||||||||||||||||||| |||||||||||| |||||||||||| ||
seq2  ATTACACATATATTCATGAATTTATCCATGTGAG-TCACAGAGGCCA-GA  137

seq1  ATGTCAGGTTTGTTTTATTTTAAATTACACATATATTCATGAATATATCC  200
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTTTGTTT--ATTTAAATTACACATATATTCATGAATATATCC  185

seq1  ATGTGAGTTCACAGAGGCCAGTAATGTCAGGTTTTCTTGGGCCTGGGGTT  250
      ||||||| ||||||||||||||||||||||||||   |||||||||||||
seq2  ATGTGAG-TCACAGAGGCCAGTAATGTCAGGTTT--CTGGGCCTGGGGTT  232

seq1  GCAGGTGATTTTGAACAGCCTGACATGAATGCTAGGAACTGAATTCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGATTTTGAACAGCCTGACATGAATGCTAGGAACTGAATTCAGGT  282

seq1  CTCAGGGGAGAGCAGTATATGCTCCCAAGTGCTGATCTACCTGTCTATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGAGAGCAGTATATGCTCCCAAGTGCTGATCTACCTGTCTATCC  332

seq1  CATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAGTGATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTAGTGATAGT  382

seq1  TTTTTGTGTTGCCTAGGTTAGCCTCAAACTGGTTATGAACCTGACCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTTGCCTAGGTTAGCCTCAAACTGGTTATGAACCTGACCTGGG  432

seq1  CTTTAACTTTTTGATTCTTCTGCCTTCACCGCCCAAAGATTGGAAAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTTTTTGATTCTTCTGCCTTCACCGCCCAAAGATTGGAAAAGGA  482

seq1  TAGGCTTGTCTACCACTGGGGCACAGATTAATATTGTGTCTCAAAAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTGTCTACCACTGGGGCACAGATTAATATTGTGTCTCAAAAGACC  532

seq1  TATGTACCTTAAAAAAACAAAACAAAAGGAAAAAGAAAAACTCTGTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACCTTAAAAAAACAAAACAAAAGGAAAAAGAAAAACTCTGTAGGA  582

seq1  CTATCACTATTGATAATAAGTATATGAAGCCATACTGTAGAATGTTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACTATTGATAATAAGTATATGAAGCCATACTGTAGAATGTTCATA  632

seq1  TATTCATGTTTAAAAATATTATCCTATTGGAAAATAATAATAAAACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGTTTAAAAATATTATCCTATTGGAAAATAATAATAAAACTTTG  682

seq1  TATTTTTTCAGAAGTCAAGTGGAAAAGAGTCTTTGTGAACACAAAGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCAGAAGTCAAGTGGAAAAGAGTCTTTGTGAACACAAAGAAGA  732

seq1  TAGTCAATGTGTAAAAATTTCAGCTGGGTTCTCAATCCTTTTATGTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATGTGTAAAAATTTCAGCTGGGTTCTCAATCCTTTTATGTATAA  782

seq1  AGATAATCCTCATGAATTCAAGCCATGTGAAAGAGATATTTGTAGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATCCTCATGAATTCAAGCCATGTGAAAGAGATATTTGTAGAAATG  832

seq1  TCTTCAATTCATCCTTAAATGTACTTATCAGGGTTCAAAATGGACACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATTCATCCTTAAATGTACTTATCAGGGTTCAAAATGGACACAAA  882

seq1  CCATATGAATATCAGGAACTTGCAAAGTGACTGTATGAATGTAAGGACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGAATATCAGGAACTTGCAAAGTGACTGTATGAATGTAAGGACTG  932

seq1  TAGAGACAACTTGAGTTTTCCCCAGTGTCTTCTGAGGCATATAAAAACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAACTTGAGTTTTCCCCAGTGTCTTCTGAGGCATATAAAAACAC  982

seq1  AAACTGAAGATAAATGTTATGAAAGTAAGCAGTGTGCAGAAGCTTTTAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAGATAAATGTTATGAAAGTAAGCAGTGTGCAGAAGCTTTTAGT  1032

seq1  GAGCACTTCTTCCAGATTCATGAAAGAACTCATGCGTCAGAGGACCTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTCTTCCAGATTCATGAAAGAACTCATGCGTCAGAGGACCTGGA  1082

seq1  TGTGTGCAAACAGCATAGGAAAGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  TGTGTGCAAACAGCATAGGAAAGAATTC  1110

seq1: chr17_33140809_33141762
seq2: B6Ng01-026N05.g_68_1016

seq1  GAATTCACACTGGAGAGAAACCATATGTATGTAAGGAATGTGGAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGGAGAGAAACCATATGTATGTAAGGAATGTGGAAAAGCA  50

seq1  TTTAGGATTTCCACATCCCTTCGTGACCATGAGAGAATTCACACTGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATTTCCACATCCCTTCGTGACCATGAGAGAATTCACACTGGAGA  100

seq1  AAAACCTTACATATGTAATTATTGTGGGAAAGCATTTAGGGTCTCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTACATATGTAATTATTGTGGGAAAGCATTTAGGGTCTCCACAT  150

seq1  GCCTTCACAAACATGAACGAGCTCATGCTGAAAAGAAACCCAGTGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCACAAACATGAACGAGCTCATGCTGAAAAGAAACCCAGTGGGTAG  200

seq1  AACTGAAGCCCATATAGATCTTTGATCAACTGTCAGGAAAAGTGTATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAGCCCATATAGATCTTTGATCAACTGTCAGGAAAAGTGTATGCA  250

seq1  GGGTCAGTCAGATGGCTCAGGGATAAAAGCACTTGCCCTAAGCTTGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTCAGATGGCTCAGGGATAAAAGCACTTGCCCTAAGCTTGGTAG  300

seq1  CCATAGTTGGAACCTCAGAACCCATGTGAAGAGAGAGAACTGAATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTGGAACCTCAGAACCCATGTGAAGAGAGAGAACTGAATTTCCA  350

seq1  AGGTTTGCCTCTGACTTGTACATATGTGCTGTCATTTGCATGCATACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGCCTCTGACTTGTACATATGTGCTGTCATTTGCATGCATACCCT  400

seq1  CACATAGATGTATAAAGAAATAGGATAATTTAAAATACCTTTTTAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATGTATAAAGAAATAGGATAATTTAAAATACCTTTTTAAATTT  450

seq1  TGTTTTGTTTTGAGACAGGGTTTCACTGTGCAGCCCCTTGGTTGTCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGAGACAGGGTTTCACTGTGCAGCCCCTTGGTTGTCCTGC  500

seq1  AACTCACTCTGCAGACCAGGCTGGCCTTAAACTCAGAGGTCCCCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCTGCAGACCAGGCTGGCCTTAAACTCAGAGGTCCCCCTGCCT  550

seq1  CTGCCTTCCGAGTGTTGAGATTAAAAGTGTGCACGTCCCTGCTGCCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCGAGTGTTGAGATTAAAAGTGTGCACGTCCCTGCTGCCTAGC  600

seq1  TTTAAGATCATTTTAATGTTGCTTTTGATTTGTAGTTATTTGTAGTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATCATTTTAATGTTGCTTTTGATTTGTAGTTATTTGTAGTTATG  650

seq1  TGTGGGTATGTGCATGTGAGGGCTGGAGCACACAGCAGTCAGAGGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTATGTGCATGTGAGGGCTGGAGCACACAGCAGTCAGAGGCATCA  700

seq1  CATTCCCCAGGAGCTGGAGTTACAGGAGCCGGTGAGGTGTCCCATGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCAGGAGCTGGAGTTACAGGAGCCGGTGAGGTGTCCCATGTGAC  750

seq1  GGCT-GGAAATCCAGCTTGGGTCCTCCGGAGAGCAGTATATTCTGAGCCA  799
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGAAATCCAGCTTGGGTCCTCCGGAGAGCAGTATATTCTGAGCCA  800

seq1  TCTTTCTAGTC-TCATAGGTGTAATTAAAGACAAATTGGGAAAGAAATAG  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAGTCTTCATAGGTGTAATTAAAGACAAATTGGGAAAGAAATAG  850

seq1  CTGGAATAGACCTTAAGATGTGTAAATTTGGACACATATGAAATGTGATG  898
      ||||||||||||||||||  ||| ||||| ||||||||||||||||||||
seq2  CTGGAATAGACCTTAAGA--TGTTAATTTTGACACATATGAAATGTGATG  898

seq1  TTGGATAAAAACGAGTTCCATCAAATGTGCTAAGGCACTTTTTTTTGGAA  948
      ||||| ||||||||||| |||| |||||||||| |||| |||||||||||
seq2  TTGGA-AAAAACGAGTT-CATC-AATGTGCTAA-GCAC-TTTTTTTGGAA  943

seq1  ATTATA  954
      ||||||
seq2  ATTATA  949