BAC Information

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BAC

Clone NameB6Ng01-027A14
Chromosome17 (Build37)
Map Location 79,034,227 - 79,035,185
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043887, LOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit
Downstream geneStrn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027A14.bB6Ng01-027A14.g
ACCDH857895DH857896
length975945
definitionDH857895|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A14, 5' end.DH857896|Mus musculus domesticus DNA, BAC clone: B6Ng01-027A14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgtttttaaaaactgaatagtactttattgtgtaaatgtacc
acattttctgtatccattcctctgttgaaggacatctgggttcttcccag
ctcctggctattataaataaggctgttatgaatatagtggagcatgtgtc
cttatgacatgttagaacatcttctgggtatatgcccaggactggtatag
ctagatcctcaggtagtaatttatatccaattttctgaggaactgccaga
ctgatttccagagtggttgtaccagcttgcaatcccaccaatggaggagt
gttcctctttcttcctatccttgccagcatctgctgtcacctgaatgttt
gcttttagctattctgactggtgtgagatggaatctcagggttgttttga
tgtgcatttccctgatgactgaggatgttgaacatttctgtaggtgcttc
tccatcattcagtattcctcagttgaaaattctttgtttagctctatacc
ccatcttgtaataggcttatttggttctctcgagtctaagttcttgagtt
ctttgtatatattggatattagccctctctcggatctagggttggtaaag
atcttttcccaatctgttggttgcctttttgtcttattgacagtgtcctt
tgccttacagaagctttgcaattttatgagatctcatttgttgattctta
atttgttgagaatagttttcactatcctgggttttttgttattccaaatg
aatttgtaaattgctctttcaaactccattgaagaattgatttggaattt
tgatggggattgcattgaatctgtaattgctttctgcaggatagcctttt
ttaccatattaatcctgccaatccatgagcatgggagatctttccatctt
ctgagttttcttcaaacctttctcaagacttgagttcttatcacacagat
ctttacttgttgtttaaggccctca
gaattcacagaccatttcctttaagatagtggctctcaaccttccaaatg
ctgtgaccattcctcatgttgttgtaaccccccagccataaaattatttc
cattgcttacttctaactgtaatttttcgacagttatgaatcataatgta
aatatctgacaggtaggatatctgatgtgtgaccaccaaaggggtctcga
cccacaggttgagaagcactgctttaaggcatgttgatgcccaaagccac
atactgggtacatgataatatggtttgggtatgaacagttcccatcaagg
actcctgtgtgtgagagatgactggatcacaagggctctgaactgatcag
taggctaatccgatgatggatttatattattgggaaatgggcctaactgg
cggaagtaggtcatgaggtctgccttgagaggatggaatgtccctgctcc
catgacatccctaaacatgcagggctgataaaactctcacacatcctttg
cgtgtcagcccaaatgccagcttcccttcagagcttcttctccttgctaa
gagagccttccgtctttctcctgacctgcctattctccacagactcttgt
ggttctttctcttcagtggacacacacattaccatgggcacagaatccag
gaagtgaaatatttgcatttaagttacctgatagagacatctgatgatgg
tacctgtagtcacccagaggccacagagaaatgggtacctgaaagggagg
ctaggaatgaaatgggatgggcaggcgagagaagaatgacgccaagacag
tttctctgtcttggctcaagtttattttcagctctgcatttatataggcc
aaaccacagtcccatcctttgtttggctagattgagtgcaaagaagtcag
taagggtcactcctcaaggtcctatggaaatgcaatgtgcaaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_79034227_79035185
seq2: B6Ng01-027A14.g_67_1011

seq1  GAATTCACAGACCATTTCCTTTAAGATAGTGGCTCTCAACCTTCCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACCATTTCCTTTAAGATAGTGGCTCTCAACCTTCCAAATG  50

seq1  CTGTGACCATTCCTCATGTTGTTGTAACCCCCCAGCCATAAAATTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCATTCCTCATGTTGTTGTAACCCCCCAGCCATAAAATTATTTC  100

seq1  CATTGCTTACTTCTAACTGTAATTTTTCGACAGTTATGAATCATAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTACTTCTAACTGTAATTTTTCGACAGTTATGAATCATAATGTA  150

seq1  AATATCTGACAGGTAGGATATCTGATGTGTGACCACCAAAGGGGTCTCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGACAGGTAGGATATCTGATGTGTGACCACCAAAGGGGTCTCGA  200

seq1  CCCACAGGTTGAGAAGCACTGCTTTAAGGCATGTTGATGCCCAAAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGTTGAGAAGCACTGCTTTAAGGCATGTTGATGCCCAAAGCCAC  250

seq1  ATACTGGGTACATGATAATATGGTTTGGGTATGAACAGTTCCCATCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGGTACATGATAATATGGTTTGGGTATGAACAGTTCCCATCAAGG  300

seq1  ACTCCTGTGTGTGAGAGATGACTGGATCACAAGGGCTCTGAACTGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGTGTGAGAGATGACTGGATCACAAGGGCTCTGAACTGATCAG  350

seq1  TAGGCTAATCCGATGATGGATTTATATTATTGGGAAATGGGCCTAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAATCCGATGATGGATTTATATTATTGGGAAATGGGCCTAACTGG  400

seq1  CGGAAGTAGGTCATGAGGTCTGCCTTGAGAGGATGGAATGTCCCTGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTAGGTCATGAGGTCTGCCTTGAGAGGATGGAATGTCCCTGCTCC  450

seq1  CATGACATCCCTAAACATGCAGGGCTGATAAAACTCTCACACATCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCCCTAAACATGCAGGGCTGATAAAACTCTCACACATCCTTTG  500

seq1  CGTGTCAGCCCAAATGCCAGCTTCCCTTCAGAGCTTCTTCTCCTTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCAGCCCAAATGCCAGCTTCCCTTCAGAGCTTCTTCTCCTTGCTAA  550

seq1  GAGAGCCTTCCGTCTTTCTCCTGACCTGCCTATTCTCCACAGACTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCTTCCGTCTTTCTCCTGACCTGCCTATTCTCCACAGACTCTTGT  600

seq1  GGTTCTTTCTCTTCAGTGGACACACACATTACCATGGGCACAGAATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCTCTTCAGTGGACACACACATTACCATGGGCACAGAATCCAG  650

seq1  GAAGTGAAATATTTGCATTTAAGTTACCTGATAGAGACATCTGATGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAATATTTGCATTTAAGTTACCTGATAGAGACATCTGATGATGG  700

seq1  TACCTGTAGTCACCCAGAGGCCACAGAGAACTGGGTACCTGAAAGGGAGG  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACCTGTAGTCACCCAGAGGCCACAGAGAAATGGGTACCTGAAAGGGAGG  750

seq1  CTAGGAATGAAATGGGATGGGCAGGCGAGAGAAGAATGACGCCAAGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAATGAAATGGGATGGGCAGGCGAGAGAAGAATGACGCCAAGACAG  800

seq1  TTTCTCTGATCTTGGCTCAAAGTTTAATTTTCAGCTCTGCATTTATATAG  850
      |||||||| ||||||||| |||||| ||||||||||||||||||||||||
seq2  TTTCTCTG-TCTTGGCTC-AAGTTT-ATTTTCAGCTCTGCATTTATATAG  847

seq1  GCCAAACCCACAGTCCCATCCTTTGTTTTGGCTAGATTGAGTTGCAAAGA  900
      |||||| |||||||||||||||||| ||||||||||||||| ||||||||
seq2  GCCAAA-CCACAGTCCCATCCTTTG-TTTGGCTAGATTGAG-TGCAAAGA  894

seq1  AAGCTCAGTAGGTGGTCAACTCCTCAAGGTTCCATATGGAAATGCAAATG  950
      |   |||||| | |||| ||||||||||||  | ||||||||||| ||||
seq2  A--GTCAGTAAG-GGTC-ACTCCTCAAGGT--CCTATGGAAATGC-AATG  937

seq1  TGGCAAGGC  959
      | |||||||
seq2  T-GCAAGGC  945