BAC Information

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BAC

Clone NameB6Ng01-028M20
Chromosome17 (Build37)
Map Location 90,634,538 - 90,750,802
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028M20.bB6Ng01-028M20.g
ACCDH859183DH859184
length1,1701,061
definitionDH859183|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M20, 5' end.DH859184|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,749,619 - 90,750,802)(90,634,538 - 90,635,603)
sequence
gaattccaaagtgtttttgttcatgccaattcttctttgaaatattcctc
tcacatctattccctgcaagcctttctaatacattttttaaatttaaatt
actttttaaaaatacatatttacaaagcattactttgtcccttacaacaa
aactaatgatgtccttcttggtattattagagctctttgatttttttttc
tacatatagtttaatttcatattattgtactatttttaaatgtactgcca
tctctttaatttgatgtcaatgggaacatattatattgatatatactatc
ataccgtatgttttatatattatgtagttttacactttgcatatactaac
atcatgtttagtatataacagacagtgactggtagacaaaggtaccataa
gtgaatggagaaacaggtgagctccttcagagtgcctgctggtctctctg
aaccctgactggtaattttccattctacaactctcacttccatacagttc
tcctccgtgcacagtatgagatagactcccaaaggataatcttacaagca
aatgatacacagctgggatctttacttgcagcccactgaagcacacacac
atcccacagaggcctcagtggtaagatctgttaggagagtattcgttagc
catgtgccatcatcacctgcctgacggtagagatcaaagccgtgttaatc
aagtgttctacctccaacttacatctcagtccctcttttattcttcttta
tttggtagttcttgctatagaaagctgctgctggccaagactcctggtcc
ttctgcctgagctctcaagttttgtaaattcagacatgtgtcatcacctt
gtactgtttctctagttttgtgaacatctgacacttgattaaatgatgaa
tgtgaaatgaattctcagattcttgactattagagttttacctttacaca
tattacgtgcttgaagacagttatagtaaagtcaaactaaaaacaaagca
gaaagctgacctccccttctggattgcgcttactcaattcattttcttag
taatactggtcgactatttagcatgcaccgagtgcttatatgaaaatgct
tcgatttaagtatttttgccaaccatactttacttaattaacagtatcct
gagaaagaattattattttc
gaattctcttacagagtttgaatatttaggttgaaattctttatcatggc
tttaatgtaaagtgtaggatgaagaatcaaatatgtgtttaagtgttcca
gtcccttagggatattacccaccagagataaagtttttaagtaataacta
cttaggcatagtgactcagtgttgtaataccaatcgataggttgaagcat
gaggctataatttaaggtcagcacatcctaaaatttaaggtcagcactca
gacactacctgaaaagaaaacaaagaaataaaaaagagaaatgcttcaat
aatgtctacagcaaattaaatgctcagtagcagaacctgctagtgtattg
attataatttcctagatcaaaagtgatcatgaaaacaaaattgaaaatag
cagaagccaggcagtggtggcacatgcctttaatcccagaacttgggagg
cagaggcaggcagatttctgagtttgaggccagcctggtctacagagtga
gtttcaggacagcaaggactgcacagagaaatcctgtcttgaaaaaccaa
tataaataaataaataaataaataaataaataaataaataaatgcaagcc
tggtctacagagtgagttccagaacagcaaggactgcacagagaaatact
gtcttgaaaaaccaatataaataaataaataaataaataaatgcaagcct
ggtctatagagtgagttccaggacagcaaggactgcacagagaaatcctg
tcttaaaaaaccaatataaataaataaataaataaataaataaataaata
aatgcaagcaaatttctttttctctggaacataaggcatttgatgctaac
actatagtgtctgaaacgtgtttctgctctcaccaatccagtctccaagt
attcaaatcctatgttcacttttgggcagattcaaatggtaagtctctca
agcttctcataggttattttctgatgctttactacccatgcttagacttt
tataagctaatctcaaatttcccattggctggcatgaaacagcaccccag
taggtatctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90749619_90750802
seq2: B6Ng01-028M20.b_41_1210 (reverse)

seq1  GAAAATAATAATTCTTTCTTCAGTGAATTACTGATAATATTAAGTAAAGT  50
      |||||||||||||||||| |||| ||  ||||| ||  ||||||||||||
seq2  GAAAATAATAATTCTTTC-TCAG-GA--TACTGTTA--ATTAAGTAAAGT  44

seq1  ATAGTTTTTGGC-AAAATACTTAAATCGATGCATTTTTCATAATAAGCAC  99
      || |   ||||| |||||||||||||||| ||| ||||||| ||||||||
seq2  ATGG---TTGGCAAAAATACTTAAATCGAAGCA-TTTTCAT-ATAAGCAC  89

seq1  TCGGTGCATGCTAAATAGTCTGACAGTTATTTACTAAGAAAATGAATTGG  149
      ||||||||||||||||||||   ||||   ||||||||||||||||||| 
seq2  TCGGTGCATGCTAAATAGTCGACCAGT--ATTACTAAGAAAATGAATTGA  137

seq1  GTAAGCGCAATCTCAGAAGGGGAGGTCAGCTTTCTGCTTTGTTTTTAGTT  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAAGCGCAATC-CAGAAGGGGAGGTCAGCTTTCTGCTTTGTTTTTAGTT  186

seq1  TGACTTTACTTATAACTGTCTTCAAGCACGTAATATGTGTAAAGGTAAAA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTAC-TATAACTGTCTTCAAGCACGTAATATGTGTAAAGGTAAAA  235

seq1  CTCTAATAGTCAAGAATCTGAGAATTCATTTCACATTCATCATTTAATCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATAGTCAAGAATCTGAGAATTCATTTCACATTCATCATTTAATCA  285

seq1  AGTGTCAGATGTTCACAAAACTAGAGAAACAGTACAAGGTGATGACACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGATGTTCACAAAACTAGAGAAACAGTACAAGGTGATGACACAT  335

seq1  GTCTGAATTTACAAAACTTGAGAGCTCAGGCAGAAGGACCAGGAGTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATTTACAAAACTTGAGAGCTCAGGCAGAAGGACCAGGAGTCTTG  385

seq1  GCCAGCAGCAGCTTTCTATAGCAAGAACTACCAAATAAAGAAGAATAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCAGCAGCTTTCTATAGCAAGAACTACCAAATAAAGAAGAATAAAA  435

seq1  GAGGGACTGAGATGTAAGTTGGAGGTAGAACACTTGATTAACACGGCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACTGAGATGTAAGTTGGAGGTAGAACACTTGATTAACACGGCTTT  485

seq1  GATCTCTACCGTCAGGCAGGTGATGATGGCACATGGCTAACGAATACTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTACCGTCAGGCAGGTGATGATGGCACATGGCTAACGAATACTCT  535

seq1  CCTAACAGATCTTACCACTGAGGCCTCTGTGGGATGTGTGTGTGCTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGATCTTACCACTGAGGCCTCTGTGGGATGTGTGTGTGCTTCAG  585

seq1  TGGGCTGCAAGTAAAGATCCCAGCTGTGTATCATTTGCTTGTAAGATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCAAGTAAAGATCCCAGCTGTGTATCATTTGCTTGTAAGATTAT  635

seq1  CCTTTGGGAGTCTATCTCATACTGTGCACGGAGGAGAACTGTATGGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGAGTCTATCTCATACTGTGCACGGAGGAGAACTGTATGGAAGT  685

seq1  GAGAGTTGTAGAATGGAAAATTACCAGTCAGGGTTCAGAGAGACCAGCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGTAGAATGGAAAATTACCAGTCAGGGTTCAGAGAGACCAGCAG  735

seq1  GCACTCTGAAGGAGCTCACCTGTTTCTCCATTCACTTATGGTACCTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGAAGGAGCTCACCTGTTTCTCCATTCACTTATGGTACCTTTGT  785

seq1  CTACCAGTCACTGTCTGTTATATACTAAACATGATGTTAGTATATGCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTCACTGTCTGTTATATACTAAACATGATGTTAGTATATGCAAA  835

seq1  GTGTAAAACTACATAATATATAAAACATACGGTATGATAGTATATATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAACTACATAATATATAAAACATACGGTATGATAGTATATATCAA  885

seq1  TATAATATGTTCCCATTGACATCAAATTAAAGAGATGGCAGTACATTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATGTTCCCATTGACATCAAATTAAAGAGATGGCAGTACATTTAA  935

seq1  AAATAGTACAATAATATGAAATTAAACTATATGTAGAAAAAAAAATCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTACAATAATATGAAATTAAACTATATGTAGAAAAAAAAATCAAA  985

seq1  GAGCTCTAATAATACCAAGAAGGACATCATTAGTTTTGTTGTAAGGGACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTAATAATACCAAGAAGGACATCATTAGTTTTGTTGTAAGGGACA  1035

seq1  AAGTAATGCTTTGTAAATATGTATTTTTAAAAAGTAATTTAAATTTAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGCTTTGTAAATATGTATTTTTAAAAAGTAATTTAAATTTAAAA  1085

seq1  AATGTATTAGAAAGGCTTGCAGGGAATAGATGTGAGAGGAATATTTCAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTAGAAAGGCTTGCAGGGAATAGATGTGAGAGGAATATTTCAAA  1135

seq1  GAAGAATTGGCATGAACAAAAACACTTTGGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  GAAGAATTGGCATGAACAAAAACACTTTGGAATTC  1170

seq1: chr17_90634538_90635603
seq2: B6Ng01-028M20.g_68_1128

seq1  GAATTCTCTTACAGAGTTTGAATATTTAGGTTGAAATTCTTTATCATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTACAGAGTTTGAATATTTAGGTTGAAATTCTTTATCATGGC  50

seq1  TTTAATGTAAAGTGTAGGATGAAGAATCAAATATGTGTTTAAGTGTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAAAGTGTAGGATGAAGAATCAAATATGTGTTTAAGTGTTCCA  100

seq1  GTCCCTTAGGGATATTACCCACCAGAGATAAAGTTTTTAAGTAATAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTAGGGATATTACCCACCAGAGATAAAGTTTTTAAGTAATAACTA  150

seq1  CTTAGGCATAGTGACTCAGTGTTGTAATACCAATCGATAGGTTGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCATAGTGACTCAGTGTTGTAATACCAATCGATAGGTTGAAGCAT  200

seq1  GAGGCTATAATTTAAGGTCAGCACATCCTAAAATTTAAGGTCAGCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATAATTTAAGGTCAGCACATCCTAAAATTTAAGGTCAGCACTCA  250

seq1  GACACTACCTGAAAAGAAAACAAAGAAATAAAAAAGAGAAATGCTTCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTACCTGAAAAGAAAACAAAGAAATAAAAAAGAGAAATGCTTCAAT  300

seq1  AATGTCTACAGCAAATTAAATGCTCAGTAGCAGAACCTGCTAGTGTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACAGCAAATTAAATGCTCAGTAGCAGAACCTGCTAGTGTATTG  350

seq1  ATTATAATTTCCTAGATCAAAAGTGATCATGAAAACAAAATTGAAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTTCCTAGATCAAAAGTGATCATGAAAACAAAATTGAAAATAG  400

seq1  CAGAAGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGAACTTGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGGCAGTGGTGGCACATGCCTTTAATCCCAGAACTTGGGAGG  450

seq1  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGA  500

seq1  GTTTCAGGACAGCAAGGACTGCACAGAGAAATCCTGTCTTGAAAAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGACAGCAAGGACTGCACAGAGAAATCCTGTCTTGAAAAACCAA  550

seq1  TATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGCAAGCC  600

seq1  TGGTCTACAGAGTGAGTTCCAGAACAGCAAGGACTGCACAGAGAAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGAACAGCAAGGACTGCACAGAGAAATACT  650

seq1  GTCTTGAAAAACCAATATAAATAAATAAATAAATAAATAAATGCAAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAAAACCAATATAAATAAATAAATAAATAAATAAATGCAAGCCT  700

seq1  GGTCTATAGAGTGAGTTCCAGGACAGCAAGGACTGCACAGAGAAATCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATAGAGTGAGTTCCAGGACAGCAAGGACTGCACAGAGAAATCCTG  750

seq1  TCTTAAAAAACCAATATAAATAAATAAATAAATAAATAAATAAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAAACCAATATAAATAAATAAATAAATAAATAAATAAATAAATA  800

seq1  AATGCAAGCAAATTTCTTTTTCTCTGGAACATAAGGCATTTGATGCTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGCAAATTTCTTTTTCTCTGGAACATAAGGCATTTGATGCTAAC  850

seq1  ACTATAGTGTCTGAAACGTGTTTCTGCTCTCACCAATCCAGTCTCCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTGTCTGAAACGTGTTTCTGCTCTCACCAATCCAGTCTCCAAGT  900

seq1  ATTCAAATCCTATGTTCACTTTTGGGCAGATTCAAATGGTAAGTCTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTCAAATCCTATGTTCACTTTTGGGCAGATTCAAATGGTAAGTC-TCTC  949

seq1  AAAGCTTCTCATAGGTTATTTTCTGATGCTTTTACTACCCATGCTTAGAC  1000
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -AAGCTTCTCATAGGTTATTTTCTGATGC-TTTACTACCCATGCTTAGAC  997

seq1  TTTTAT-AGCTAATCTTCAAATTTCCCCATTGGCTGGCATGAAACAAGCA  1049
      |||||| |||||||| |||||||| |||||||||||||||||||| ||||
seq2  TTTTATAAGCTAATC-TCAAATTT-CCCATTGGCTGGCATGAAAC-AGCA  1044

seq1  CCCCAGTAGGTATCTAA  1066
      |||||||||||||||||
seq2  CCCCAGTAGGTATCTAA  1061