BAC Information

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BAC

Clone NameB6Ng01-028O10
Chromosome17 (Build37)
Map Location 25,657,688 - 25,870,689
singlet/doubletdoublet
Overlap geneLOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1
Upstream geneTraf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5
Downstream geneBC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028O10.bB6Ng01-028O10.g
ACCDH859251DH859252
length1,034300
definitionDH859251|Mus musculus domesticus DNA, BAC clone: B6Ng01-028O10, 5' end.DH859252|Mus musculus domesticus DNA, BAC clone: B6Ng01-028O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,657,688 - 25,658,727)(25,870,390 - 25,870,689)
sequence
gaattccacagccggctgagtggagccaggcttaatgctgaggaagccac
ctcccccacagcgctccccctgcagcccccacggctgtgcccaaatcaca
gccagagaccaattaccagcctcccaacgggccccgggggtcctaggagg
ggcagctgctgggcccaaacacctctaccctgcatgggcccagccaaatg
gctggagtctcactatccttctaccccggataggtggaatctgggcccag
ggacacccactatctctaaaggctgggttctgcccatcccttcaccatct
ccttgcctggccgcagaagctggaccaaggttgtgtctcttttgtgtcta
ttcacaatgatcatccagcctgtgatcttttcctgtatgtgacttggtaa
actgaatcaggaggcatcatcttgccttaaaaactaagaatgtagccagg
cgtggtggcgcacgcctttattcccagcactcgggaggcagacacaggtg
gatttctgagttcgaggccagcctggtctataaagtgagttccaggacag
ccagggctacacagagaaaccctgtctcgaaaaaccaaccaaccaaccaa
ccaaccaaccaaccaaacaaacaaacaaactcacaactaagaatgtcctg
ggagtttgatgggctcagttactcacacccagctcaccctcagtttgttt
ctacaaggctcagggtctggctttctgggcaggaggtcaggtgggtttac
caggatgggagggcagcagagaaaagcacagtcatgtgggtaaaaacaga
gtaggggacctggggctggccagcaatggttgagatggctagctgggttg
tcagctgctgaagcctgctgagagtctcatagggaggtggaggctgcagc
aggctgacctgatgtggtagacagaaccctgacctgtcactcagcccagt
tctacctggccttggatgagtgtccactgcactgagttgaatggaggttc
tgttgctttcagtttctgcctcaggacatcgcca
ttttgctcccacagctggcctgtcctttgggaggtaggatgggtcatgga
agttgagaggagcattggccctgtctggggacccacctgaagctcctgtg
ccctggagggtgctggctatgatgccagtcactgctttgcttccttttcc
accagggccatgcctaccatgggggatttgcttctttctctttgtaataa
tatgtgtatgtttaagtgtgtgtatgtatgtgagtgcatgtgtttatgtg
tatgtatgagtacatgtttggtgcatgtgagtatatgtgtttatgcatgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25657688_25658727
seq2: B6Ng01-028O10.b_48_1081

seq1  GAATTCCACAGCCGGCTGAGTGGAGCCAGGCTTAATGCTGAGGAAGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCCGGCTGAGTGGAGCCAGGCTTAATGCTGAGGAAGCCAC  50

seq1  CTCCCCCACAGCGCTCCCCCTGCAGCCCCCACGGCTGTGCCCAAATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCACAGCGCTCCCCCTGCAGCCCCCACGGCTGTGCCCAAATCACA  100

seq1  GCCAGAGACCAATTACCAGCCTCCCAACGGGCCCCGGGGGTCCTAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACCAATTACCAGCCTCCCAACGGGCCCCGGGGGTCCTAGGAGG  150

seq1  GGCAGCTGCTGGGCCCAAACACCTCTACCCTGCATGGGCCCAGCCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCTGGGCCCAAACACCTCTACCCTGCATGGGCCCAGCCAAATG  200

seq1  GCTGGAGTCTCACTATCCTTCTACCCCGGATAGGTGGAATCTGGGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTCTCACTATCCTTCTACCCCGGATAGGTGGAATCTGGGCCCAG  250

seq1  GGACACCCACTATCTCTAAAGGCTGGGTTCTGCCCATCCCTTCACCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACCCACTATCTCTAAAGGCTGGGTTCTGCCCATCCCTTCACCATCT  300

seq1  CCTTGCCTGGCCGCAGAAGCTGGACCAAGGTTGTGTCTCTTTTGTGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTGGCCGCAGAAGCTGGACCAAGGTTGTGTCTCTTTTGTGTCTA  350

seq1  TTCACAATGATCATCCAGCCTGTGATCTTTTCCTGTATGTGACTTGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGATCATCCAGCCTGTGATCTTTTCCTGTATGTGACTTGGTAA  400

seq1  ACTGAATCAGGAGGCATCATCTTGCCTTAAAAACTAAGAATGTAGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCAGGAGGCATCATCTTGCCTTAAAAACTAAGAATGTAGCCAGG  450

seq1  CGTGGTGGCGCACGCCTTTATTCCCAGCACTCGGGAGGCAGACACAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTGGCGCACGCCTTTATTCCCAGCACTCGGGAGGCAGACACAGGTG  500

seq1  GATTTCTGAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAG  550

seq1  CCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAACCAACCAACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAACCAACCAACCAA  600

seq1  CCAACCAACCAACCAAACAAACAAACAAACTCACAACTAAGAATGTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAACCAACCAAACAAACAAACAAACTCACAACTAAGAATGTCCTG  650

seq1  GGAGTTTGATGGGCTCAGTTACTCACACCCAGCTCACCCTCAGTTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGATGGGCTCAGTTACTCACACCCAGCTCACCCTCAGTTTGTTT  700

seq1  CTACAAGGCTCAGGGTCTGGCTTTCTGGGCAGGAGGTCAGGTGGGTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGCTCAGGGTCTGGCTTTCTGGGCAGGAGGTCAGGTGGGTTTAC  750

seq1  CAGGATGGGAGGGCAGCAGAGAAAAGCACAGTCATGTGGGTAAAAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGGAGGGCAGCAGAGAAAAGCACAGTCATGTGGGTAAAAACAGA  800

seq1  GTAGGGGACCTGGGGCTGGCCAGCAATGGTTGAGATGGCTAGCTGGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGACCTGGGGCTGGCCAGCAATGGTTGAGATGGCTAGCTGGGTTG  850

seq1  TCAGCTGCTGAAGCCTGCTGAGAGTCTCATAGGGAGGTGGAGGCTGCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCTGAAGCCTGCTGAGAGTCTCATAGGGAGGTGGAGGCTGCAGC  900

seq1  AAGGCTGACCTGGATGTGGTAGACAGAACCCTGACCTGTCACTCAGCCCA  950
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  -AGGCTGACCT-GATGTGGTAGACAGAACCCTGACCTGTCACTCAGCCCA  948

seq1  GTTCCTACCCTGGCCTTGGATGAGTGTCCACTGCACTGAGTTGTATGGAA  1000
      ||| ||| ||||||||||||||||||||||||||||||||||| |||| |
seq2  GTT-CTA-CCTGGCCTTGGATGAGTGTCCACTGCACTGAGTTGAATGG-A  995

seq1  GGTTCGTGTTGCTTTCAGTTTCTGCCTCAGGACACCGCCA  1040
      ||||| |||||||||||||||||||||||||||| |||||
seq2  GGTTC-TGTTGCTTTCAGTTTCTGCCTCAGGACATCGCCA  1034

seq1: chr17_25870390_25870689
seq2: B6Ng01-028O10.g_73_372 (reverse)

seq1  ACATACATAAACACATATACTCACATGCACCAAACATGTACTCATACATA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATAAACACATATACTCACATGCACCAAACATGTACTCATACATA  50

seq1  CACATAAACACATGCACTCACATACATACACACACTTAAACATACACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAACACATGCACTCACATACATACACACACTTAAACATACACATA  100

seq1  TTATTACAAAGAGAAAGAAGCAAATCCCCCATGGTAGGCATGGCCCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAAAGAGAAAGAAGCAAATCCCCCATGGTAGGCATGGCCCTGGT  150

seq1  GGAAAAGGAAGCAAAGCAGTGACTGGCATCATAGCCAGCACCCTCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGAAGCAAAGCAGTGACTGGCATCATAGCCAGCACCCTCCAGGG  200

seq1  CACAGGAGCTTCAGGTGGGTCCCCAGACAGGGCCAATGCTCCTCTCAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCTTCAGGTGGGTCCCCAGACAGGGCCAATGCTCCTCTCAACT  250

seq1  TCCATGACCCATCCTACCTCCCAAAGGACAGGCCAGCTGTGGGAGCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACCCATCCTACCTCCCAAAGGACAGGCCAGCTGTGGGAGCAAAA  300