BAC Information

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BAC

Clone NameB6Ng01-028P18
Chromosome17 (Build37)
Map Location 12,330,356 - 12,466,202
singlet/doubletdoublet
Overlap geneAgpat4, Tdgf1-ps2, Map3k4
Upstream genePark2
Downstream gene4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P18.bB6Ng01-028P18.g
ACCDH859313DH859314
length1,1231,069
definitionDH859313|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P18, 5' end.DH859314|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,330,356 - 12,331,485)(12,465,122 - 12,466,202)
sequence
gaattcaaagatatcatcctgcttctctgcctctgcctccctgtgtcaag
gaggcaagagattaaagggcatgagaattcagagttcaaggccagcctgg
gctacatttggagacattgtctcaaagaacagaacaaaaagtaattgaaa
cgcaagatacaagttttaaagtatgaagacagcaggcattcacgattgtt
gccagtaaccaggagaacaaagttacattatcataaaaagtaattggaca
gtgttcactggaccaaatggttgtttttcaaacctacaggcctgaaagac
aaagcccagaaaccaggggaaagaaaacctttatgtccataatgttgaac
acgtcattatttattcttgaaaaacaaaaaacgaaaacaaggctggataa
ggaagtgcattcttttccgttcaggactgaagcccaaggatcctaggacc
agcctgggctccatagtgagttccaagttatcctgggctgtaaggcaaag
ttgtctcatcaaaaaaagggaaaggagaaggaaagcttaaatacacagtg
acaaaacagcgagggtgtagtcattcagctagcctagtgtgactgccacg
tggacagttggatatcatggttaaagaaagaaaggttcaactacttaaac
agtatttaatagcaagattgtagccatgttttaaaaacaaagcctcctct
gcaatgggttatctggtgaagaacaagcaaagtctgtggttagtgtgctc
caggtagattctggtatcttaactccgagctttgcaagttccctagtgtg
tgtggattaccataataacggggataatttcatcacttggtaaatgactc
ccacaaatagtactgaatcctttgctttcaccagatctacctgtatttta
atgaaaaactctttttcaaagggagaatctgtcagctgtgagttccttcc
tccacctagtatctgagtgcagcgcccgctggggtttaaggagctcattt
gcttttatgtgagccacagctgaatatgtttgatatatggcttggtacct
tggcctgtcatgaaaaggctctttatgccactgcaaggggggctggactg
aggctaatcctggggttgtctgt
gaattcttggaaatacctgtcctttctgtcctacctgtcctttagcctag
ctggctagtgctgttaaaatgtaaacagaaaggcagaggtgtgacatcgg
atcagtggagcctttccgctggcatgaaggaagtgtgcgaggcttcctgt
ctgcattgacttttaatgactcctgagctgatatggcagactagtgaatc
ataatgaattggtctgtctgtcttcagtcctgttcccattcagtttcaaa
tgttaatgctcatttgtctgtgacagaagagagcaagagatgaaatctgc
acttttgctcatcactgtcttctgctttgtatgaaataatcttgccgggg
ccttaagcattcctgaagttttgcatgtgtgcagtgtgcatgggtgtttg
catgtgtgtgggcacatttgtgtgtttagatgtgtgttcatgtgtgtgtc
agtgcatgtggagggcagaggtccaccttgatttcttccttcatcgttct
gcagttcctttgttgcagcagggtctcttgctaaacctgtagctcgtgaa
ttcagtggtactccctggccactggtctcagagaccaccctgctgccacc
accaggcagcactggcttataggcagccatcatgccttcgtgacttagac
ctgggtgttagggatccagtctgcttgaatggcatttggatgtcacgcca
tctcatcccatcaggaagaatagagaccagggagatttaaacaacctgct
tctaattgaatgtattttgttaagacagaggcagggattggctgttctct
agaactcagtcgctgtcacacgtctcatgccatttcccattcttcaagtt
gaaggtggttacatcagataaggggctcagacagacagtttgtagtatca
aatttgacagtccgttcagcgtctgtaagtataaaagacacaagggtact
atagcagacatgaaatagtcattaaaaccttacagttccatgtacgaaat
gtctcctttttctggtggtagcctgaatgtaatgtatccagttaccacag
tgactagctcatgtttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_12330356_12331485
seq2: B6Ng01-028P18.b_46_1168

seq1  GAATTCAAAGATATCATCCTGCTTCTCTGCCTCTGCCTCCCTGTGTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATATCATCCTGCTTCTCTGCCTCTGCCTCCCTGTGTCAAG  50

seq1  GAGGCAAGAGATTAAAGGGCATGAGAATTCAGAGTTCAAGGCCAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGAGATTAAAGGGCATGAGAATTCAGAGTTCAAGGCCAGCCTGG  100

seq1  GCTACATTTGGAGACATTGTCTCAAAGAACAGAACAAAAAGTAATTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTTGGAGACATTGTCTCAAAGAACAGAACAAAAAGTAATTGAAA  150

seq1  CGCAAGATACAAGTTTTAAAGTATGAAGACAGCAGGCATTCACGATTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGATACAAGTTTTAAAGTATGAAGACAGCAGGCATTCACGATTGTT  200

seq1  GCCAGTAACCAGGAGAACAAAGTTACATTATCATAAAAAGTAATTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAACCAGGAGAACAAAGTTACATTATCATAAAAAGTAATTGGACA  250

seq1  GTGTTCACTGGACCAAATGGTTGTTTTTCAAACCTACAGGCCTGAAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACTGGACCAAATGGTTGTTTTTCAAACCTACAGGCCTGAAAGAC  300

seq1  AAAGCCCAGAAACCAGGGGAAAGAAAACCTTTATGTCCATAATGTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGAAACCAGGGGAAAGAAAACCTTTATGTCCATAATGTTGAAC  350

seq1  ACGTCATTATTTATTCTTGAAAAACAAAAAACGAAAACAAGGCTGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCATTATTTATTCTTGAAAAACAAAAAACGAAAACAAGGCTGGATAA  400

seq1  GGAAGTGCATTCTTTTCCGTTCAGGACTGAAGCCCAAGGATCCTAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCATTCTTTTCCGTTCAGGACTGAAGCCCAAGGATCCTAGGACC  450

seq1  AGCCTGGGCTCCATAGTGAGTTCCAAGTTATCCTGGGCTGTAAGGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGCTCCATAGTGAGTTCCAAGTTATCCTGGGCTGTAAGGCAAAG  500

seq1  TTGTCTCATCAAAAAAAGGGAAAGGAGAAGGAAAGCTTAAATACACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCATCAAAAAAAGGGAAAGGAGAAGGAAAGCTTAAATACACAGTG  550

seq1  ACAAAACAGCGAGGGTGTAGTCATTCAGCTAGCCTAGTGTGACTGCCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGCGAGGGTGTAGTCATTCAGCTAGCCTAGTGTGACTGCCACG  600

seq1  TGGACAGTTGGATATCATGGTTAAAGAAAGAAAGGTTCAACTACTTAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTTGGATATCATGGTTAAAGAAAGAAAGGTTCAACTACTTAAAC  650

seq1  AGTATTTAATAGCAAGATTGTAGCCATGTTTTAAAAACAAAGCCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAATAGCAAGATTGTAGCCATGTTTTAAAAACAAAGCCTCCTCT  700

seq1  GCAATGGGTTATCTGGTGAAGAACAAGCAAAGTCTGTGGTTAGTGTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGTTATCTGGTGAAGAACAAGCAAAGTCTGTGGTTAGTGTGCTC  750

seq1  CAGGTAGATTCTGGTATCTTAACTCCGAGCTTTGCAAGTTCCCTAGTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGATTCTGGTATCTTAACTCCGAGCTTTGCAAGTTCCCTAGTGTG  800

seq1  TGTGGATTACCATAATAACGGGGATAATTTCATCACTTGGTAAATGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATTACCATAATAACGGGGATAATTTCATCACTTGGTAAATGACTC  850

seq1  CCACAAATAGTACTGAATCCTTTGCTTTCACCAGATCTACCTGTATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATAGTACTGAATCCTTTGCTTTCACCAGATCTACCTGTATTTTA  900

seq1  ATGAAAAAACTCTTTTTCAAAGGGAGAATCTGTCAGCTGTGAGTTCCTTC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-AAAAACTCTTTTTCAAAGGGAGAATCTGTCAGCTGTGAGTTCCTTC  949

seq1  CTCCACCTAGTATCTGAGTGCAGCGCCCCGCTGGGGTTTAAGGAGCTCAT  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCCACCTAGTATCTGAGTGCAGCG-CCCGCTGGGGTTTAAGGAGCTCAT  998

seq1  TTGCTTTTATGTGAGCCACAGCTGAGTATGTTTGATATATGGCTTGGTAC  1050
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCTTTTATGTGAGCCACAGCTGAATATGTTTGATATATGGCTTGGTAC  1048

seq1  CTTTGCCCTGTCATGAAGAGGCTCTTTATGCCACCTGCAAGGTGTGCCTG  1100
      | ||| ||||||||||| ||||||||||||||| |||||||| | | |||
seq2  C-TTGGCCTGTCATGAAAAGGCTCTTTATGCCA-CTGCAAGG-GGGGCTG  1095

seq1  GACTGAGGCTAATCCTGTGGGTTTGTCTGT  1130
      |||||||||||||||  |||| ||||||||
seq2  GACTGAGGCTAATCC--TGGGGTTGTCTGT  1123

seq1: chr17_12465122_12466202
seq2: B6Ng01-028P18.g_67_1135 (reverse)

seq1  CTGAAACATGAAGCTAGTCACTGTTGTAAACTCGAATACATTTACACTCA  50
      |||||||||| ||||||||||||| || |||| | ||||| ||||| |||
seq2  CTGAAACATG-AGCTAGTCACTGTGGT-AACT-GGATACA-TTACATTCA  46

seq1  GGCTACCACCATGAAAAAGAGACATTTCGTAACATGGAACTTGTAAGGTT  100
      |||||||||||  |||| |||||||||||| ||||||||| |||||||||
seq2  GGCTACCACCAGAAAAAGGAGACATTTCGT-ACATGGAAC-TGTAAGGTT  94

seq1  TTAATGACTATTTTCATTGTTCTTGCTATAGTACCCTTGTGTTCTTTTAT  150
      |||||||||| ||||| |||   |||||||||||||||||| ||||||||
seq2  TTAATGACTA-TTTCA-TGT--CTGCTATAGTACCCTTGTG-TCTTTTAT  139

seq1  ACTTACAGACGCTGAACGGACTGTCAAATTTGATACTACAAACTGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGACGCTGAACGGACTGTCAAATTTGATACTACAAACTGTCTGT  189

seq1  CCTGAGCCCCTTATCTGATGTAACCACCTTCAACTTGAAGAATGGGAAAT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGAGCCCCTTATCTGATGTAACCACCTTCAACTTGAAGAATGGGAAAT  238

seq1  GGCATGAGACGTGTGACAGCGACTGAGTTCTAGAGAACAGCCAATCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGACGTGTGACAGCGACTGAGTTCTAGAGAACAGCCAATCCCTG  288

seq1  CCTCTGTCTTAACAAAATACATTCAATTAGAAGCAGGTTGTTTAAATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTTAACAAAATACATTCAATTAGAAGCAGGTTGTTTAAATCTC  338

seq1  CCTGGTCTCTATTCTTCCTGATGGGATGAGATGGCGTGACATCCAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCTATTCTTCCTGATGGGATGAGATGGCGTGACATCCAAATGC  388

seq1  CATTCAAGCAGACTGGATCCCTAACACCCAGGTCTAAGTCACGAAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGCAGACTGGATCCCTAACACCCAGGTCTAAGTCACGAAGGCAT  438

seq1  GATGGCTGCCTATAAGCCAGTGCTGCCTGGTGGTGGCAGCAGGGTGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGCCTATAAGCCAGTGCTGCCTGGTGGTGGCAGCAGGGTGGTCT  488

seq1  CTGAGACCAGTGGCCAGGGAGTACCACTGAATTCACGAGCTACAGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCAGTGGCCAGGGAGTACCACTGAATTCACGAGCTACAGGTTTA  538

seq1  GCAAGAGACCCTGCTGCAACAAAGGAACTGCAGAACGATGAAGGAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGACCCTGCTGCAACAAAGGAACTGCAGAACGATGAAGGAAGAAA  588

seq1  TCAAGGTGGACCTCTGCCCTCCACATGCACTGACACACACATGAACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGACCTCTGCCCTCCACATGCACTGACACACACATGAACACAC  638

seq1  ATCTAAACACACAAATGTGCCCACACACATGCAAACACCCATGCACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACACACAAATGTGCCCACACACATGCAAACACCCATGCACACTG  688

seq1  CACACATGCAAAACTTCAGGAATGCTTAAGGCCCCGGCAAGATTATTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCAAAACTTCAGGAATGCTTAAGGCCCCGGCAAGATTATTTCA  738

seq1  TACAAAGCAGAAGACAGTGATGAGCAAAAGTGCAGATTTCATCTCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCAGAAGACAGTGATGAGCAAAAGTGCAGATTTCATCTCTTGCT  788

seq1  CTCTTCTGTCACAGACAAATGAGCATTAACATTTGAAACTGAATGGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTCACAGACAAATGAGCATTAACATTTGAAACTGAATGGGAAC  838

seq1  AGGACTGAAGACAGACAGACCAATTCATTATGATTCACTAGTCTGCCATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAAGACAGACAGACCAATTCATTATGATTCACTAGTCTGCCATA  888

seq1  TCAGCTCAGGAGTCATTAAAAGTCAATGCAGACAGGAAGCCTCGCACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAGGAGTCATTAAAAGTCAATGCAGACAGGAAGCCTCGCACACT  938

seq1  TCCTTCATGCCAGCGGAAAGGCTCCACTGATCCGATGTCACACCTCTGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATGCCAGCGGAAAGGCTCCACTGATCCGATGTCACACCTCTGCC  988

seq1  TTTCTGTTTACATTTTAACAGCACTAGCCAGCTAGGCTAAAGGACAGGTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTACATTTTAACAGCACTAGCCAGCTAGGCTAAAGGACAGGTA  1038

seq1  GGACAGAAAGGACAGGTATTTCCAAGAATTC  1081
      |||||||||||||||||||||||||||||||
seq2  GGACAGAAAGGACAGGTATTTCCAAGAATTC  1069