BAC Information

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BAC

Clone NameB6Ng01-029F21
Chromosome17 (Build37)
Map Location 44,792,533 - 44,941,386
singlet/doubletdoublet
Overlap geneRunx2, Supt3h
Upstream geneSlc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream gene4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F21.bB6Ng01-029F21.g
ACCDH859586DH859587
length1,2431,012
definitionDH859586|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F21, 5' end.DH859587|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,940,095 - 44,941,386)(44,792,533 - 44,793,561)
sequence
gaattcaactacattattttcatcttctcatcaattttttacataaagca
tcctagcatgtatgagactatgctaaatgaaaatcaaaatcatttgcacg
cagcctacctctctgaagtagggctgggagccctgtgagacatgggaggt
ggcaagggtgaaattttcagaaaggactcactcctctacaaccctcaaaa
caagggctttcctgatgctccctgggtactcgggaggagcacttcaccca
gggcctcgtgtcactccaagggcctctcattacagatcactgcctgaaac
acgtgcttagccaggtaacacaggtacaacacaggaaaagaccaatagga
gagtgaaaaggtaaagtaagaatatgtataaccttcgggtgtgctttata
tttgatttataaatgggattttcttgagaaaagagcaataaggaaatgta
atcagtttagactctaaccaattgttattctgagaaagcacaaatagctc
acaagtttgctttcaagttatttactctaagaatcatgcaaagtaaacaa
actgcctttactacttggtcatcagacttttaaaaaacaattccagaatg
tgctccattaaatgttcccagagccacacgctgtcctggtccaagcacca
tatctggttgatcctcagctctgcctgaggcatagaccatgggagaggaa
gggtgagacagggccagccttaggtgccttttgtaaacagacgcacaccc
ctaggtaaatcaatgagagccattggctactgaatttatgtcagaaataa
acaaaagccaagataaacatgcaaaacattcacggcaagctgtttccaaa
aaaattgcagtttgtttttaataaaacattacacttcctttcttctcttt
ggtctagagctgtgaccataagtaatactaaagggaaaataaagacagag
acaactttgtagatgataaaccaacagtcatatttatttctccaatacgt
tttaagtacatatcatctatacccaatagttttatttaaattaacactgg
gaaaacaccccagtgtctctgctgcctgtgattctatggaggcatgaact
gtcactgaaactgcatgatttttgtactgtctctggtcgtttcctatagc
ttccgcctggaattcctggcagggtcgtgctatctggaacgtgcgtgtga
cttccacatcctctatgagggatcccaatcctcgataagggga
gaattccacctcctcagtagactgactactatgaaaagcatggtgcgtga
gggccaagatccaaatgagcctctttggctagagtagatgaagaaaagca
cttttccctgctctctgccctgccaaagatgggctctctgcatgtgctgg
gatcaaaagcacacttagtaaataaacaagaaggtgaatcctgagattca
cccatgatgtagctactgtcctgggtgttcctggatttcctgcttgtcta
gtttcaaagactcggcataccctttactacttgcaggcatctttgtcccc
gcatcctcgcaacaacatgaggacatttaaagaacatccacacaaccaag
agcagagcatgtccagatacacctgtacacctttgctttgggaggctgga
gaaaaagctatcatgaccaaaagaggacaatgaagaaaactgtgaaaaca
actgatccttaattggcccaccaataccaaagccccccatgtgaaggacc
agtatcttataagacagacttctaggatgctatcaatacctgtggaatgc
cataatttcattttaagaaatggacccagggaatattagctgtcctgctg
cttctaacatgccaagcaactgcgagcaaggagctcaaccttcctgaccc
tctcaagagggatggtagtggagagatactgctgccaactggaggtgaac
ctattctgcagaaggggaggtcaaactcctgatcttcgcagatgctctgc
ccccccataagtccctgctttctcagaagcttactcacacgtctgcatgc
agggatgctgttaaggtagcccctcccccactgcctttcaatgtctggct
caaggatgtctaaagtaccttaggttctcggcttctgtgttgttgtttgg
tttggttgttgttgaggcggggtttctctgtataggtttctctgttcagg
ctgtctggaactcactttgtagatcaggtggtctcgaactagaaatccgt
cgctatgcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44940095_44941386
seq2: B6Ng01-029F21.b_45_1287 (reverse)

seq1  TCCCCTTATCTGAGGAATTAGGGAACCCCTCATAGAAGGGAGTTGTGAGA  50
      |||||||||| ||||| |   || | ||||||||||  |||  |||| ||
seq2  TCCCCTTATC-GAGGATT---GGGATCCCTCATAGA--GGA--TGTG-GA  41

seq1  ATTCAACAGCAGTGTTTTCAAAGGATTAGCACAGCACCTGGCCCAGGAAA  100
      | |||   |||    || || |    |||||| |  ||||  ||||||| 
seq2  AGTCACACGCA--CGTTCCAGA----TAGCAC-GACCCTG--CCAGGAAT  82

seq1  TCTCAAGCCCAGAAAGCTAATAGAGAAACAGACTCAACCAAGGACAGGTA  150
      || || ||   | ||||| |||| ||||      | ||||  |||||   
seq2  TC-CAGGC---GGAAGCT-ATAG-GAAA------CGACCAGAGACAG--T  118

seq1  ACAAATAAATCATGCAGTTTCAGCTGACACGTTCATGCACTCCATTAGAA  200
      ||||  ||||||||||||||||| ||||| |||||||| ||||| |||||
seq2  ACAA--AAATCATGCAGTTTCAG-TGACA-GTTCATGC-CTCCA-TAGAA  162

seq1  TCACAGGCAGCAGGAGACACTTGGGGTGTTTTCCCAGTGTTAATTTAAAA  250
      |||||||||||| ||||||| ||||||||||||||||||||||||| |||
seq2  TCACAGGCAGCA-GAGACAC-TGGGGTGTTTTCCCAGTGTTAATTT-AAA  209

seq1  TAAAACTATTTGGGGTATAGATTGATATGTACTTAAAAACGTATTGGAGA  300
      ||||||||||  ||||||||| |||||||||||| |||||||||||||||
seq2  TAAAACTATT--GGGTATAGA-TGATATGTACTT-AAAACGTATTGGAGA  255

seq1  AATAAATAATGACTGTTTGGTTTATTCATCTTACAAAGTTGTCTCTGTCT  350
      ||||||| ||||||| |||||||| ||||| |||||||||||||||||||
seq2  AATAAAT-ATGACTG-TTGGTTTA-TCATC-TACAAAGTTGTCTCTGTCT  301

seq1  TTATTTTCCCTTTAGTATTACTTATGGTCACAGCTCTAGACCAAAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCCTTTAGTATTACTTATGGTCACAGCTCTAGACCAAAGAGAA  351

seq1  GAAAGGAAGTGTAATGTTTTATTAAAAACAAACTGCAATTTTTTTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAGTGTAATGTTTTATTAAAAACAAACTGCAATTTTTTTGGAAA  401

seq1  CAGCTTGCCGTGAATGTTTTGCATGTTTATCTTGGCTTTTGTTTATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCGTGAATGTTTTGCATGTTTATCTTGGCTTTTGTTTATTTCT  451

seq1  GACATAAATTCAGTAGCCAATGGCTCTCATTGATTTACCTAGGGGTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAATTCAGTAGCCAATGGCTCTCATTGATTTACCTAGGGGTGTGC  501

seq1  GTCTGTTTACAAAAGGCACCTAAGGCTGGCCCTGTCTCACCCTTCCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTACAAAAGGCACCTAAGGCTGGCCCTGTCTCACCCTTCCTCTC  551

seq1  CCATGGTCTATGCCTCAGGCAGAGCTGAGGATCAACCAGATATGGTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTCTATGCCTCAGGCAGAGCTGAGGATCAACCAGATATGGTGCTT  601

seq1  GGACCAGGACAGCGTGTGGCTCTGGGAACATTTAATGGAGCACATTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGACAGCGTGTGGCTCTGGGAACATTTAATGGAGCACATTCTGG  651

seq1  AATTGTTTTTTAAAAGTCTGATGACCAAGTAGTAAAGGCAGTTTGTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTTTAAAAGTCTGATGACCAAGTAGTAAAGGCAGTTTGTTTAC  701

seq1  TTTGCATGATTCTTAGAGTAAATAACTTGAAAGCAAACTTGTGAGCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGATTCTTAGAGTAAATAACTTGAAAGCAAACTTGTGAGCTATT  751

seq1  TGTGCTTTCTCAGAATAACAATTGGTTAGAGTCTAAACTGATTACATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCTCAGAATAACAATTGGTTAGAGTCTAAACTGATTACATTTC  801

seq1  CTTATTGCTCTTTTCTCAAGAAAATCCCATTTATAAATCAAATATAAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGCTCTTTTCTCAAGAAAATCCCATTTATAAATCAAATATAAAGC  851

seq1  ACACCCGAAGGTTATACATATTCTTACTTTACCTTTTCACTCTCCTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCGAAGGTTATACATATTCTTACTTTACCTTTTCACTCTCCTATTG  901

seq1  GTCTTTTCCTGTGTTGTACCTGTGTTACCTGGCTAAGCACGTGTTTCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCTGTGTTGTACCTGTGTTACCTGGCTAAGCACGTGTTTCAGG  951

seq1  CAGTGATCTGTAATGAGAGGCCCTTGGAGTGACACGAGGCCCTGGGTGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATCTGTAATGAGAGGCCCTTGGAGTGACACGAGGCCCTGGGTGAA  1001

seq1  GTGCTCCTCCCGAGTACCCAGGGAGCATCAGGAAAGCCCTTGTTTTGAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTCCCGAGTACCCAGGGAGCATCAGGAAAGCCCTTGTTTTGAGG  1051

seq1  GTTGTAGAGGAGTGAGTCCTTTCTGAAAATTTCACCCTTGCCACCTCCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGAGGAGTGAGTCCTTTCTGAAAATTTCACCCTTGCCACCTCCCA  1101

seq1  TGTCTCACAGGGCTCCCAGCCCTACTTCAGAGAGGTAGGCTGCGTGCAAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACAGGGCTCCCAGCCCTACTTCAGAGAGGTAGGCTGCGTGCAAA  1151

seq1  TGATTTTGATTTTCATTTAGCATAGTCTCATACATGCTAGGATGCTTTAT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGATTTTCATTTAGCATAGTCTCATACATGCTAGGATGCTTTAT  1201

seq1  GTAAAAAATTGATGAGAAGATGAAAATAATGTAGTTGAATTC  1292
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAATTGATGAGAAGATGAAAATAATGTAGTTGAATTC  1243

seq1: chr17_44792533_44793561
seq2: B6Ng01-029F21.g_65_1076

seq1  GAATTCCACCTCCTCAGTAGACTGACTACTATGAAAAGCATGGTGCGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTCCTCAGTAGACTGACTACTATGAAAAGCATGGTGCGTGA  50

seq1  GGGCCAAGATCCAAATGAGCCTCTTTGGCTAGAGTAGATGAAGAAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAGATCCAAATGAGCCTCTTTGGCTAGAGTAGATGAAGAAAAGCA  100

seq1  CTTTTCCCTGCTCTCTGCCCTGCCAAAGATGGGCTCTCTGCATGTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTGCTCTCTGCCCTGCCAAAGATGGGCTCTCTGCATGTGCTGG  150

seq1  GATCAAAAGCACACTTAGTAAATAAACAAGAAGGTGAATCCTGAGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAAGCACACTTAGTAAATAAACAAGAAGGTGAATCCTGAGATTCA  200

seq1  CCCATGATGTAGCTACTGTCCTGGGTGTTCCTGGATTTCCTGCTTGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATGTAGCTACTGTCCTGGGTGTTCCTGGATTTCCTGCTTGTCTA  250

seq1  GTTTCAAAGACTCGGCATACCCTTTACTACTTGCAGGCATCTTTGTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAGACTCGGCATACCCTTTACTACTTGCAGGCATCTTTGTCCCC  300

seq1  GCATCCTCGCAACAACATGAGGACATTTAAAGAACATCCACACAACCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCGCAACAACATGAGGACATTTAAAGAACATCCACACAACCAAG  350

seq1  AGCAGAGCATGTCCAGATACACCTGTACACCTTTGCTTTGGGAGGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGCATGTCCAGATACACCTGTACACCTTTGCTTTGGGAGGCTGGA  400

seq1  GAAAAAGCTATCATGACCAAAAGAGGACAATGAAGAAAACTGTGAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTATCATGACCAAAAGAGGACAATGAAGAAAACTGTGAAAACA  450

seq1  ACTGATCCTTAATTGGCCCACCAATACCAAAGCCCCCCATGTGAAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCCTTAATTGGCCCACCAATACCAAAGCCCCCCATGTGAAGGACC  500

seq1  AGTATCTTATAAGACAGACTTCTAGGATGCTATCAATACCTGTGGAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTATAAGACAGACTTCTAGGATGCTATCAATACCTGTGGAATGC  550

seq1  CATAATTTCATTTTAAGAAATGGACCCAGGGAATATTAGCTGTCCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTCATTTTAAGAAATGGACCCAGGGAATATTAGCTGTCCTGCTG  600

seq1  CTTCTAACATGCCAAGCAACTGCGAGCAAGGAGCTCAACCTTCCTGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACATGCCAAGCAACTGCGAGCAAGGAGCTCAACCTTCCTGACCC  650

seq1  TCTCAAGAGGGATGGTAGTGGAGAGATACTGCTGCCAACTGGAGGTGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAGGGATGGTAGTGGAGAGATACTGCTGCCAACTGGAGGTGAAC  700

seq1  CTATTCTGCAGAAGGGGAGGTCAAACTCCTGATCTTCGCAGATGCTCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGCAGAAGGGGAGGTCAAACTCCTGATCTTCGCAGATGCTCTGC  750

seq1  CCCCCCATAAGTCCCTGCTTTCTCAGAAGCTTACTCACACGTCTGCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCATAAGTCCCTGCTTTCTCAGAAGCTTACTCACACGTCTGCATGC  800

seq1  AGGGATGCTGTTAAAGGTAGCCCCTCCCCCACTGCCTTTCCAATGTCTGG  850
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  AGGGATGCTGTT-AAGGTAGCCCCTCCCCCACTGCCTTT-CAATGTCTGG  848

seq1  CTCAAGGATGTCTAAAGTACCTTTAGGTTCTCGGCTTTCTTGTTGTTGTT  900
      ||||||||||||||||||||| |||||||||||||||   ||||||||  
seq2  CTCAAGGATGTCTAAAGTACC-TTAGGTTCTCGGCTTCTGTGTTGTTG--  895

seq1  TGTTTTGTTTTGTTTGTTTGTTTGAGGCGGGGTTTCTCTGTATAGGTTTC  950
         |||| |||| |||||   |||||||||||||||||||||||||||||
seq2  ---TTTGGTTTGGTTGTT--GTTGAGGCGGGGTTTCTCTGTATAGGTTTC  940

seq1  TCTGTTCCAGGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTGGTCTCG  1000
      |||||||   |||||| ||||||||||||||||||| |||| ||||||||
seq2  TCTGTTC--AGGCTGT-CTGGAACTCACTTTGTAGATCAGG-TGGTCTCG  986

seq1  AACTCAGAAATCCGCCTGCCTATGCCTCC  1029
      |||| |||||||||  |  ||||||||||
seq2  AACT-AGAAATCCG--TCGCTATGCCTCC  1012