BAC Information

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BAC

Clone NameB6Ng01-030I10
Chromosome17 (Build37)
Map Location 56,979,612 - 56,980,799
singlet/doubletsinglet
Overlap genenone
Upstream geneEmr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2
Downstream geneAcsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, Cntnap5c, LOC674419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030I10.bB6Ng01-030I10.g
ACCDH860405DH860406
length1,1431,099
definitionDH860405|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I10, 5' end.DH860406|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttggggcccactgggttctgcacaatatggataccaggctttgc
agaaatagctaagccactatgaagccatcaaagggcctcccgagacatta
gaaagacttcagaatgaagactttgctgagtcagatgactgccaactatt
ggacaaccttgagggtgtccagtgggtccaacaaacatatctggtctaaa
cttagtgctgtctatggaacaggtccactttcggagcctcatcgattcca
gcctggagactgggtcctagtcaagagacacagccaaaggatgctagagg
ttgacaggattacagagtggattcgtcatactcacacccaaattgtagac
tggtttgcaattgaggatgacctggaccagcagagacaaagaaagtcaaa
gactaccaagcatcctcctaaccttctaaagctcatgttacagggagtac
gatgagtctcttcctgtgcattctacaataccccgcccccaccagcccct
taaccttacctgagccatcatcaacatggccacagggaagattgtcaact
ccacgtctcaggttacgcccccaggtaccgatgggtaatgaatgggacac
ccaagaacaactttggcacagcccccaaccgattacggccacaacataca
tttggtacaatggcagactcagccccaagctttccatgtctgcccaggac
attcccagagccatgactaacaataaatgtggaggctctgaagcgttctt
ctgtgtgacatggggacgcaagtccactggatggatacactagaagccct
ccaataaggacctcatcaccgtgactaggttcaatacccggggctgtggg
aagaaatgcaatcctcttgttatcagagtcacagatgacagcagaagtca
actggactactggtaagacttggggactgagactttatgttacagtacag
atcctggagtctgtcacatccactctatgtcagacacccccctccatgct
cttagcacaactggctggctaaacccactacaactctgcagactcagacc
ccatcactcaggttacccaatctcctaacagccacaagccaagacacaca
agactgatacacagcctgaccctctctggacatgagtttccag
gaattcttacagagactgggttcaaatataagtagagccatatcaaaccc
tgaaactagacagccattgatagaaatcttgatctttgagaatgcaaaca
ctgaatgtaggagagtaatcagaccactaaaagcacaagaaacaccagta
gatgaacggataagggaggcaactggtactggctctcaggagcataatgc
caaccatagctacaaatatcagaaatcaaaatgcttaatgttttacttgt
ggtcagtttggtcatttccaaagaaattgtaaggctaaaaaaaaatccag
aactcaaaataataggtacattgactcaggagactatggtaatcatagaa
gagaccaaggaagttctggttgctatgagccccaaaggtttccagtgtat
tgtagccactgtggaaaagaaaacattggtctaaggattgctggtccaag
agagacatacaaggtaacctcttgccattgggaaaggaactgagggaact
gtcagctcaaggccccacagcaaacaatatgaacccctttcctttggtca
ggcaggcggtaccaaataggcaagaaaatcaaaattaggtagttctgatc
ttatacatgctacagaacaaagtgcagctttggacatgaccacagatacc
cctcttacattatcctcaataactgagtgttacaaattacccactgatgt
gtatggtcccttaccttcagggacagtgggaataatcttgggaagaagta
gattaacttctcaaggatttattgtgtatcagtatagtagatgaggatag
caaagaagaaataaaaatcatcgcaaatgtgaaaagggagatgcaaatag
aagcaggggatataatggctcaattgttggttcctacatcagagcattgc
tgctcctttgacaacatgggtttggagagtactgggaaacatgtgtctgg
caacagtggatatgatcagaaccaattatagtacaatgaacgtgttgact
tagtgatacgcactgatgtagtatctttcctaagccttgaatccgaattg
ccacctccgaaggttactaatatttaagggtatagtaatatatccaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56979612_56980799
seq2: B6Ng01-030I10.b_45_1187

seq1  GAATTCTTGGGGCCCACTGGGTTCTGCACAATATGGATACCAGGCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGGCCCACTGGGTTCTGCACAATATGGATACCAGGCTTTGC  50

seq1  AGAAATAGCTAAGCCACTATGAAGCCATCAAAGGGCCTCCCGAGACATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGCTAAGCCACTATGAAGCCATCAAAGGGCCTCCCGAGACATTA  100

seq1  GAAAGACTTCAGAATGAAGACTTTGCTGAGTCAGATGACTGCCAACTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTTCAGAATGAAGACTTTGCTGAGTCAGATGACTGCCAACTATT  150

seq1  GGACAACCTTGAGGGTGTCCAGTGGGTCCAACAAACATATCTGGTCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACCTTGAGGGTGTCCAGTGGGTCCAACAAACATATCTGGTCTAAA  200

seq1  CTTAGTGCTGTCTATGGAACAGGTCCACTTTCGGAGCCTCATCGATTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCTGTCTATGGAACAGGTCCACTTTCGGAGCCTCATCGATTCCA  250

seq1  GCCTGGAGACTGGGTCCTAGTCAAGAGACACAGCCAAAGGATGCTAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGACTGGGTCCTAGTCAAGAGACACAGCCAAAGGATGCTAGAGG  300

seq1  TTGACAGGATTACAGAGTGGATTCGTCATACTCACACCCAAATTGTAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGATTACAGAGTGGATTCGTCATACTCACACCCAAATTGTAGAC  350

seq1  TGGTTTGCAATTGAGGATGACCTGGACCAGCAGAGACAAAGAAAGTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGCAATTGAGGATGACCTGGACCAGCAGAGACAAAGAAAGTCAAA  400

seq1  GACTACCAAGCATCCTCCTAACCTTCTAAAGCTCATGTTACAGGGAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCAAGCATCCTCCTAACCTTCTAAAGCTCATGTTACAGGGAGTAC  450

seq1  GATGAGTCTCTTCCTGTGCATTCTACAATACCCCGCCCCCACCAGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCTCTTCCTGTGCATTCTACAATACCCCGCCCCCACCAGCCCCT  500

seq1  TAACCTTACCTGAGCCATCATCAACATGGCCACAGGGAAGATTGTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTACCTGAGCCATCATCAACATGGCCACAGGGAAGATTGTCAACT  550

seq1  CCACGTCTCAGGTTACGCCCCCAGGTACCGATGGGTAATGAATGGGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTCTCAGGTTACGCCCCCAGGTACCGATGGGTAATGAATGGGACAC  600

seq1  CCAAGAACAACTTTGGCACAGCCCCCAACCGATTACGGCCACAACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACAACTTTGGCACAGCCCCCAACCGATTACGGCCACAACATACA  650

seq1  TTTGGTACAATGGCAGACTCAGCCCCAAGCTTTCCATGTCTGCCCAGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTACAATGGCAGACTCAGCCCCAAGCTTTCCATGTCTGCCCAGGAC  700

seq1  ATTCCCAGAGCCATGACTAACAATAAATGTGGAGGCTCTGAAGCGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGAGCCATGACTAACAATAAATGTGGAGGCTCTGAAGCGTTCTT  750

seq1  CTGTGTGACATGGGGACGCAAGTCCACTGGATGGATACACTAGAAGCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGACATGGGGACGCAAGTCCACTGGATGGATACACTAGAAGCCCT  800

seq1  CCAATAAGGACCTCATCACCGTGACTAGGTTCAATACCC-GGGCTGTGGG  849
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCAATAAGGACCTCATCACCGTGACTAGGTTCAATACCCGGGGCTGTGGG  850

seq1  AAGAAATGCAATCCTCTTGTTATCAGAGTCACAGATGACAGCAGAAAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AAGAAATGCAATCCTCTTGTTATCAGAGTCACAGATGACAGCAGAA--GT  898

seq1  CAACTGGACTACTGGTAAGACTTGGGGACTGAGACTTTATGTTACCAGTA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACTGGACTACTGGTAAGACTTGGGGACTGAGACTTTATGTTA-CAGTA  947

seq1  CAGATCCTGGAGTCCTGTTCACCATCCAACTCTATGTTCAGACAACCCCC  999
      ||||||||||||| ||| ||| ||||| |||||||| |||||| ||||||
seq2  CAGATCCTGGAGT-CTG-TCA-CATCC-ACTCTATG-TCAGAC-ACCCCC  991

seq1  CTCCCAATTGCTCTTAGCACCAACTGGCTGGCTAAAACCCCACCTACAAC  1049
      ||||    ||||||||||| ||||||||||||||||  |||| |||||| 
seq2  CTCC---ATGCTCTTAGCA-CAACTGGCTGGCTAAA--CCCA-CTACAA-  1033

seq1  ACCTCTGCAGACTCAGACACCAATCCAACCTCAGGGTTTACTCCCATCTT  1099
        |||||||||||||||| || |||    ||||||  |||| || |||| 
seq2  --CTCTGCAGACTCAGAC-CCCATC---ACTCAGG--TTAC-CCAATCT-  1073

seq1  CCCCTAACAAGGCACCAACCCAAGCCAAAAGGACAACACAAAGACTGAGT  1149
        |||||||  ||     | ||||||||   ||| |||| |||||||| |
seq2  --CCTAACA--GC-----CACAAGCCAA---GAC-ACAC-AAGACTGA-T  1108

seq1  AACGACAGCCCTGACCCTCTCTGGAACATGATGTTCCAG  1188
      |   |||| ||||||||||||||| ||||||  ||||||
seq2  A--CACAG-CCTGACCCTCTCTGG-ACATGAGTTTCCAG  1143