BAC Information

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BAC

Clone NameB6Ng01-030P23
Chromosome17 (Build37)
Map Location 47,001,041 - 47,124,827
singlet/doubletdoublet
Overlap geneA330017A19Rik, Tbcc, Prph2, Ubr2
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203
Downstream geneLOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P23.bB6Ng01-030P23.g
ACCDH860735DH860736
length614823
definitionDH860735|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P23, 5' end.DH860736|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,124,216 - 47,124,827)(47,001,041 - 47,001,853)
sequence
gaattcagccacagctgtgttaaaggactggctgcttgccctggctacat
gctcgcctcacacagccttttcttttctgaaaagccaccccctgcttgtt
cagttcatagctgagggtgattgtgggctggagaggatggatattggaca
ctaggaggtcactagatttattagatgtcagtcaccagaggttgactgct
ctgttttttcagtgtgttctagataattgggattgtgggtaaagtgttga
atggctttttttctttcttttttgctgtttgtttttgtttgtaacagact
ttctctgtgtaagtctgactatcctagaactcacgctatagaccagcctg
gcccacctgcctctgcctcctgaatcctgggatctgaggcgcgtgccacc
accagccagcagggtaaaatgtgtttaataggacaagttgttgtgcacta
ttttggaagtgttgacacttattgtattcatgaaattgaatctgtctgtt
cagctcagagatccgagttgaacgcctgagaaacagatggcttttctccc
ttttgtccctctctccctctctccctctttcccttcatccctccctccct
ccctcccttccttt
gaattcaaggctaggctgatctacacagagagttccaagccggccagggg
tctgcatagaaacatggccccaagtttggatgtgcacacctgttattcca
gtgcccagggggctgagtgaggcaaggggcttacaagttggtggccaaca
gtaatacagtgagaccttatttcaataaattaataagtgaccggataatt
aaatgaatgaaaaagacaactatataggggaagtcttgtggtgtggctaa
atgacaggctacccactccgcaagctgggggtccagggtctaattcccag
acctctcctccccccgctaaaaaaaggtctgaaattggcttcaaagtgct
agagagcaacatattggaatgctgccggtattctcactatcgcgtctatg
ctgttacttggtttaaacgacgagtgactacgaacactctaagacgcctc
tctagatgcccatgctattaaagtcaggacatggttttcaagctggtcat
tttccttgacaggctttttaaagactctgaagtcctatcgagcttctagt
cccaagacaaggagttgatacaacacatcagagatgtttgttttcaaagg
cagccagcactcccactggccgccagtctcacacacccagcctgtttccc
cacagagaacatgagggggaggacagccactgggttaggaggtatcactc
tagcggaaagacagctagggggctaggctgggacacctccctgtgctcag
ggcccccagtgccctacctgtcttatgcacccaaaaggacgggggatggt
gcacggtgtgggttgttaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47124216_47124827
seq2: B6Ng01-030P23.b_44_656 (reverse)

seq1  AAGGAAGGGAGGGAGGGAGGGAGGGATGAAGGGAAAGAGGGAGAGAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGAGGGAGGGAGGGAGGGATGAAGGGAAAGAGGGAGAGAGGGA  50

seq1  GAGAGGGACAAAAGGGAG-AAAGCCATCTGTTTCTCAGGCGTTCAACTCG  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGAGGGACAAAAGGGAGAAAAGCCATCTGTTTCTCAGGCGTTCAACTCG  100

seq1  GATCTCTGAGCTGAACAGACAGATTCAATTTCATGAATACAATAAGTGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGCTGAACAGACAGATTCAATTTCATGAATACAATAAGTGTC  150

seq1  AACACTTCCAAAATAGTGCACAACAACTTGTCCTATTAAACACATTTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCCAAAATAGTGCACAACAACTTGTCCTATTAAACACATTTTAC  200

seq1  CCTGCTGGCTGGTGGTGGCACGCGCCTCAGATCCCAGGATTCAGGAGGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGGCTGGTGGTGGCACGCGCCTCAGATCCCAGGATTCAGGAGGCA  250

seq1  GAGGCAGGTGGGCCAGGCTGGTCTATAGCGTGAGTTCTAGGATAGTCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGGCCAGGCTGGTCTATAGCGTGAGTTCTAGGATAGTCAGA  300

seq1  CTTACACAGAGAAAGTCTGTTACAAACAAAAACAAACAGCAAAAAAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACAGAGAAAGTCTGTTACAAACAAAAACAAACAGCAAAAAAGAAA  350

seq1  GAAAAAAAGCCATTCAACACTTTACCCACAATCCCAATTATCTAGAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGCCATTCAACACTTTACCCACAATCCCAATTATCTAGAACAC  400

seq1  ACTGAAAAAACAGAGCAGTCAACCTCTGGTGACTGACATCTAATAAATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAACAGAGCAGTCAACCTCTGGTGACTGACATCTAATAAATCT  450

seq1  AGTGACCTCCTAGTGTCCAATATCCATCCTCTCCAGCCCACAATCACCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTCCTAGTGTCCAATATCCATCCTCTCCAGCCCACAATCACCCT  500

seq1  CAGCTATGAACTGAACAAGCAGGGGGTGGCTTTTCAGAAAAGAAAAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATGAACTGAACAAGCAGGGGGTGGCTTTTCAGAAAAGAAAAGGCT  550

seq1  GTGTGAGGCGAGCATGTAGCCAGGGCAAGCAGCCAGTCCTTTAACACAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGCGAGCATGTAGCCAGGGCAAGCAGCCAGTCCTTTAACACAGC  600

seq1  TGTGGCTGAATTC  612
      |||||||||||||
seq2  TGTGGCTGAATTC  613

seq1: chr17_47001041_47001853
seq2: B6Ng01-030P23.g_66_878

seq1  GAATTCAAGGCTAGGCTGATCTACACAGAGAGTTCCAAGCCGGCCAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTAGGCTGATCTACACAGAGAGTTCCAAGCCGGCCAGGGG  50

seq1  TCTGCATAGAAACATGGCCCCAAGTTTGGATGTGCACACCTGTTATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAGAAACATGGCCCCAAGTTTGGATGTGCACACCTGTTATTCCA  100

seq1  GTGCCCAGGGGGCTGAGTGAGGCAAGGGGCTTACAAGTTGGTGGCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAGGGGGCTGAGTGAGGCAAGGGGCTTACAAGTTGGTGGCCAACA  150

seq1  GTAATACAGTGAGACCTTATTTCAATAAATTAATAAGTGACCGGATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACAGTGAGACCTTATTTCAATAAATTAATAAGTGACCGGATAATT  200

seq1  AAATGAATGAAAAAGACAACTATATAGGGGAAGTCTTGTGGTGTGGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGAAAAAGACAACTATATAGGGGAAGTCTTGTGGTGTGGCTAA  250

seq1  ATGACAGGCTACCCACTCCGCAAGCTGGGGGTCCAGGGTCTAATTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGCTACCCACTCCGCAAGCTGGGGGTCCAGGGTCTAATTCCCAG  300

seq1  ACCTCTCCTCCCCCCGCTAAAAAAAGGTCTGAAATTGGCTTCAAAGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCTCCCCCCGCTAAAAAAAGGTCTGAAATTGGCTTCAAAGTGCT  350

seq1  AGAGAGCAACATATTGGAATGCTGCCGGTATTCTCACTATCGCGTCTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAACATATTGGAATGCTGCCGGTATTCTCACTATCGCGTCTATG  400

seq1  CTGTTACTTGGTTTAAACGACGAGTGACTACGAACACTCTAAGACGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACTTGGTTTAAACGACGAGTGACTACGAACACTCTAAGACGCCTC  450

seq1  TCTAGATGCCCATGCTATTAAAGTCAGGACATGGTTTTCAAGCTGGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGCCCATGCTATTAAAGTCAGGACATGGTTTTCAAGCTGGTCAT  500

seq1  TTTCCTTGACAGGCTTTTTAAAGACTCTGAAGTCCTATCGAGCTTCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGACAGGCTTTTTAAAGACTCTGAAGTCCTATCGAGCTTCTAGT  550

seq1  CCCAAGACAAGGAGTTGATACAACACATCAGAGATGTTTGTTTTCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACAAGGAGTTGATACAACACATCAGAGATGTTTGTTTTCAAAGG  600

seq1  CAGCCAGCACTCCCACTGGCCGCCAGTCTCACACACCCAGCCTGTTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCACTCCCACTGGCCGCCAGTCTCACACACCCAGCCTGTTTCCC  650

seq1  CACAGAGAACATGAGGGGGAGGACAGCCACTGGGTTAGGAGGTATCACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAACATGAGGGGGAGGACAGCCACTGGGTTAGGAGGTATCACTC  700

seq1  TAGCGGGAAGACAGCTAGGGGGCTAGGCTGGGACACCTCCCTGTGCTCAG  750
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGAAAGACAGCTAGGGGGCTAGGCTGGGACACCTCCCTGTGCTCAG  750

seq1  GGCCCCCAGTGCCCTACCTGTCTTATGCACCCAAAAGGACGGGGGATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCAGTGCCCTACCTGTCTTATGCACCCAAAAGGACGGGGGATGGT  800

seq1  GCACGGTGTGGGT  813
      |||||||||||||
seq2  GCACGGTGTGGGT  813