BAC Information

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BAC

Clone NameB6Ng01-031B17
Chromosome17 (Build37)
Map Location 39,946,121 - 40,050,999
singlet/doubletdoublet
Overlap geneLOC672857, LOC627695
Upstream geneLOC100043297, LOC100043300, EG668200
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031B17.bB6Ng01-031B17.g
ACCDH860815DH860816
length1,071937
definitionDH860815|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B17, 5' end.DH860816|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,946,121 - 39,947,104)(40,050,058 - 40,050,999)
sequence
gaattccatagactgaaggggacagggaataagagttatatcttgacacc
atgaagacatgatggaatgtaggtgaaaatacagaacaagtatagaaaag
accccactacattagagatgccagtaacaaggaatggccaagaacattaa
cattagtagattgtagacagccagaacctagaagacaaactatgtgtgct
ccaaagattagaactagtaaaacaactgaagctactttgaggaccccaga
agaccatgaatgaatcccagataattgagatttcagttatttatactatt
ggagcatagttctgccttgtttgcattagtgctataccctggttcttcct
tcttggtgaatgtagtgaattaagtttgaatttctacataaacccataac
tgaaagattaaaagagatgatttatattttaagagaaactatatatatat
atatatatatatatacacatatatatacatgtttctattttatgttttac
atatttagagaaagtatatatgaatacatatatgaatttatatgtgtata
tatgtgcatatatatatagatagatatagatatagatatatgtttctatt
ttatgtttttaaatacagaccacattttctctgcctctccttccagtcca
atgctccctccattttctctaccatccactctacatttcatgttcagaaa
agcatggtctagattatcttcaacagtccatggcatacaaactttcagaa
agactaagcaccttcctaatttctttgtcagcacattcatcatttgtata
taggagagctactgattcttttcagagttattttcttattcagtcacatt
tctaaggatgttttatcagctgtaggaattcccaggtggaattttagggt
cacttgtacattcaatcattttacctgtgaaagcagtatgatgacttctt
cctaagtctaaccctttgatcccctttagttgtcttatggttctaggtaa
aataccaaatattatattaattgaaaaggagaaggacgaagcatttgtga
cactgaattattttcattttt
gaattcctagaaagaaaaaaaatattgtgattttaaaatttaaactgttt
atattaataataatgatgataattattattattattactacaatggacct
tttcactatattgtaatgctaaacttttaattatgaaaattaattctctt
gaagaaaaagagtttcacattaagcattaatagtttttctctaattctga
agaatttgttctatacttttttccccaagcacaaatattttacaagacat
ttcaaagactttaactgttttcaaaaatctcacacaaaattaaatataat
attatgtcattgtttgagagatctctcaagtatatcaaaaccaaaacaca
ccattgagttacacaaaaccaggactaataagtattcatctcacacagta
aaaagaatctttgagataacttatgtttcaaatgaagtaatcttgtgtga
attattttcattgttcatagggaaaaagttacttaacacttctgcttcca
tttttatattcttgttgataagagtttacatagatatatgtaaatgctat
ttatatgcagccttaattctactaaaacaagtcatttttttatcttctag
aatcaatcccagtaatgcataatattcttcagttgcctacaaatgttcca
cagatggctctattggtctgagtttctcttcttcctgctgtacctgcata
tatcactactacttggaagaaaatcacacaatttggagtagcgatgtttt
tagcttattattagacccataatttatctgtttcccaggaccctagacta
cgtatatcaggtaaggacctgtgcttaagaggggaacataaggataaaac
agataagaagggcaaaaccaagcaacagagaaagaaatacaaataaattg
gggtttactaggtttggagggggggaagtaaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39946121_39947104
seq2: B6Ng01-031B17.b_136_1115

seq1  ATAGAAAAGACCCCACTACATTAGAGATGCCAGTAACAAGGAATGGCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGACCCCACTACATTAGAGATGCCAGTAACAAGGAATGGCCAA  50

seq1  GAACATTAACATTAGTAGATTGTAGACAGCCAGAACCTAGAAGACAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTAACATTAGTAGATTGTAGACAGCCAGAACCTAGAAGACAAACT  100

seq1  ATGTGTGCTCCAAAGATTAGAACTAGTAAAACAACTGAAGCTACTTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTCCAAAGATTAGAACTAGTAAAACAACTGAAGCTACTTTGAG  150

seq1  GACCCCAGAAGACCATGAATGAATCCCAGATAATTGAGATTTCAGTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGAAGACCATGAATGAATCCCAGATAATTGAGATTTCAGTTATT  200

seq1  TATACTATTGGAGCATAGTTCTGCCTTGTTTGCATTAGTGCTATACCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATTGGAGCATAGTTCTGCCTTGTTTGCATTAGTGCTATACCCTG  250

seq1  GTTCTTCCTTCTTGGTGAATGTAGTGAATTAAGTTTGAATTTCTACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCTTCTTGGTGAATGTAGTGAATTAAGTTTGAATTTCTACATAA  300

seq1  ACCCATAACTGAAAGATTAAAAGAGATGATTTATATTTTAAGAGAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAACTGAAAGATTAAAAGAGATGATTTATATTTTAAGAGAAACTA  350

seq1  TATATATATATATATATATATATACACATATATATACATGTTTCTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATACACATATATATACATGTTTCTATTTT  400

seq1  ATGTTTTACATATTTAGAGAAAGTATATATGAATACATATATGAATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTACATATTTAGAGAAAGTATATATGAATACATATATGAATTTAT  450

seq1  ATGTGTATATATGTGCATATATATATAGATAGATATAGATATAGATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATATGTGCATATATATATAGATAGATATAGATATAGATATAT  500

seq1  GTTTCTATTTTATGTTTTTAAATACAGACCACATTTTCTCTGCCTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTTATGTTTTTAAATACAGACCACATTTTCTCTGCCTCTCCT  550

seq1  TCCAGTCCAATGCTCCCTCCATTTTCTCTACCATCCACTCTACATTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCCAATGCTCCCTCCATTTTCTCTACCATCCACTCTACATTTCAT  600

seq1  GTTCAGAAAAGCATGGTCTAGATTATCTTCAACAGTCCATGGCATACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAAAGCATGGTCTAGATTATCTTCAACAGTCCATGGCATACAAA  650

seq1  CTTTCAGAAAGACTAAGCACCTTCCTAATTTCTTTGTCAGCACATTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGAAAGACTAAGCACCTTCCTAATTTCTTTGTCAGCACATTCATC  700

seq1  ATTTGTATATAGGAGAGCTACTGATTCTTTTCAGAGTTATTTTCTTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATATAGGAGAGCTACTGATTCTTTTCAGAGTTATTTTCTTATTC  750

seq1  AGTCACATTTCTAAGGATG-TTTATCAGCTGTAGGAATTCCCAGGTGGAA  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCACATTTCTAAGGATGTTTTATCAGCTGTAGGAATTCCCAGGTGGAA  800

seq1  TTTTAGGGTCACTTGTACATTCAATCATTTTACCTGTGAAAGCAGTATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGGTCACTTGTACATTCAATCATTTTACCTGTGAAAGCAGTATGA  850

seq1  TGACTTCTTCCTAAGTTCTAACCCTTTGATCCCCTTTAGTTGTCTTATTG  899
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  TGACTTCTTCCTAAG-TCTAACCCTTTGATCCCCTTTAGTTGTCTTATGG  899

seq1  TTCTAGGTAAAATACCAAATATTATATTAAATAGAAAGGGAGAAAGGACA  949
      |||||||||||||||||||||||||||| ||| |||| |||| |||||| 
seq2  TTCTAGGTAAAATACCAAATATTATATT-AATTGAAAAGGAG-AAGGAC-  946

seq1  GAAGCATGTGTTGACACTGAATTATTTTCATTTTT  984
      ||||||| || ||||||||||||||||||||||||
seq2  GAAGCATTTG-TGACACTGAATTATTTTCATTTTT  980

seq1: chr17_40050058_40050999
seq2: B6Ng01-031B17.g_66_1002 (reverse)

seq1  TTTTATTTACTTCCCCCCCTCCAAACCCTAGTAAAACCCCAATTTATTTG  50
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TTTTATTTACTTCCCCCCCTCCAAA-CCTAGT-AAACCCCAATTTATTTG  48

seq1  TATTTTCTTTTCTCTGTTGCTTGGTTTTGCCCTTCTTATCTGTTTTATCC  100
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTT--CTTTCTCTGTTGCTTGGTTTTGCCCTTCTTATCTGTTTTATCC  96

seq1  TTATGTTCCCCTCTTAAGCACAGGTCCTTACCCTGATATACGTAGTCTAG  150
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTATGTTCCCCTCTTAAGCACAGGTCCTTA-CCTGATATACGTAGTCTAG  145

seq1  GGTCCTGGGAAACAGATAAATTATGGGTCTAATAATAAGCTAAAAACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGGGAAACAGATAAATTATGGGTCTAATAATAAGCTAAAAACATC  195

seq1  GCTACTCCAAATTGTGTGATTTTCTTCCAAGTAGTAGTGATATATGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCCAAATTGTGTGATTTTCTTCCAAGTAGTAGTGATATATGCAGG  245

seq1  TACAGCAGGAAGAAGAGAAACTCAGACCAATAGAGCCATCTGTGGAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGGAAGAAGAGAAACTCAGACCAATAGAGCCATCTGTGGAACAT  295

seq1  TTGTAGGCAACTGAAGAATATTATGCATTACTGGGATTGATTCTAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGCAACTGAAGAATATTATGCATTACTGGGATTGATTCTAGAAGA  345

seq1  TAAAAAAATGACTTGTTTTAGTAGAATTAAGGCTGCATATAAATAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATGACTTGTTTTAGTAGAATTAAGGCTGCATATAAATAGCATT  395

seq1  TACATATATCTATGTAAACTCTTATCAACAAGAATATAAAAATGGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATCTATGTAAACTCTTATCAACAAGAATATAAAAATGGAAGCA  445

seq1  GAAGTGTTAAGTAACTTTTTCCCTATGAACAATGAAAATAATTCACACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTAAGTAACTTTTTCCCTATGAACAATGAAAATAATTCACACAA  495

seq1  GATTACTTCATTTGAAACATAAGTTATCTCAAAGATTCTTTTTACTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTCATTTGAAACATAAGTTATCTCAAAGATTCTTTTTACTGTGT  545

seq1  GAGATGAATACTTATTAGTCCTGGTTTTGTGTAACTCAATGGTGTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATACTTATTAGTCCTGGTTTTGTGTAACTCAATGGTGTGTTTT  595

seq1  GGTTTTGATATACTTGAGAGATCTCTCAAACAATGACATAATATTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGATATACTTGAGAGATCTCTCAAACAATGACATAATATTATATT  645

seq1  TAATTTTGTGTGAGATTTTTGAAAACAGTTAAAGTCTTTGAAATGTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGTGTGAGATTTTTGAAAACAGTTAAAGTCTTTGAAATGTCTTG  695

seq1  TAAAATATTTGTGCTTGGGGAAAAAAGTATAGAACAAATTCTTCAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATTTGTGCTTGGGGAAAAAAGTATAGAACAAATTCTTCAGAATT  745

seq1  AGAGAAAAACTATTAATGCTTAATGTGAAACTCTTTTTCTTCAAGAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAACTATTAATGCTTAATGTGAAACTCTTTTTCTTCAAGAGAAT  795

seq1  TAATTTTCATAATTAAAAGTTTAGCATTACAATATAGTGAAAAGGTCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCATAATTAAAAGTTTAGCATTACAATATAGTGAAAAGGTCCAT  845

seq1  TGTAGTAATAATAATAATAATTATCATCATTATTATTAATATAAACAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAATAATAATAATAATTATCATCATTATTATTAATATAAACAGTT  895

seq1  TAAATTTTAAAATCACAATATTTTTTTTCTTTCTAGGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTAAAATCACAATATTTTTTTTCTTTCTAGGAATTC  937