BAC Information

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BAC

Clone NameB6Ng01-031M15
Chromosome17 (Build37)
Map Location 13,270,510 - 13,426,661
singlet/doubletdoublet
Overlap geneTcp10c, Ttll2, Unc93a, Smok2a, Smok2b
Upstream geneAgpat4, Tdgf1-ps2, Map3k4, 4732491K20Rik, LOC625753, Plg, Slc22a3, LOC100041192, Slc22a2, Slc22a1, Igf2r, Air, EG635617, Mas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c
Downstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M15.bB6Ng01-031M15.g
ACCDH861307DH861308
length8951,020
definitionDH861307|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M15, 5' end.DH861308|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,270,510 - 13,271,407)(13,425,631 - 13,426,661)
sequence
gaattcataaattgtaatataggacaatacccagacataatgaatccatt
gctgctcaggcttctctcttggctgtgtggaccctggcccagccacaggc
ctgctgaatctagctgagtcttcatatgcaagccagtgctattatggtct
ttgttctacccctgaagtttttataggctagcgagcacaggtgtggacag
gagagaaattactttttcagtaacttttggcatacactctgcattgaaaa
attacacttgcttgttcacaagtgccctatggggttgttggtggatggta
gccaggtctgatgaaaaacataaaagggtttgataggcagatgtggtctt
tgaatcttggctggtctgtgcggaatgtatctgaaatgcatcacttaact
gtatatcagtttctgagttctatcactgtccgtatgtacagctcacattc
tccagagcaccctcacgtgaaagttcgaaaagaaaacgtcacagtcccct
cttgccatttctgggtgttcagcaaagttcagcaaagaccattttgcatt
gattctgcaccaggcagtcacaggattgttgaggttttgtcggttgctat
gtgctgtaatgctcaattctataacccaagtctacgtgcctcaaaatgag
tgaattctcttgtgtgccagcttctgttgtgcaaactttgtgccttagtt
taaagctattggttaataaagatgccaacagctcatagctgggagagata
tgtggaattttggttcctggacttgaggtctgaggcagataccatgaggg
agaggagaagaggagggaaagacaccatggggtcatgagagtcagcctgt
gggaatagaatcatggtggaagatgggatatggatagggaagttg
gaattcacaacagctctggcttccagcatgaaatctgccccaaatcaaga
attgcaccctgactaacccatcccagaaacattgacagttgatgacatcc
agaaaagagtcattcctcctgaaggatgtagccctggtagatcaaccact
ccagtggatgcccccacactcatgaacatatgacagcaggttattaaaat
aggacatgaattttgtgggttgttggagtgactgtggggctgcatctggc
atgagtcagggaagggcaggggttgactaggatccagatatatttaatgg
atatctgaagttctcaaaaaaatattatgacatttaaaaaccataaaaaa
gctgggcagtggtggcccaacctttgatcccagcacttgggaggcagagg
caggcagatttctgagtttgaggccagcctgtccttcagagtcagttcca
gaacagccagggctacacagagaaaccctgtctcaaaatataaaacaaaa
gaaaacaaaacaaaagaaaataaaatattaaagccccaaacaaatccaaa
acagaaacaaccaaactacaatgaataagaaaatctataagaacaaaagt
cagaaagctaaaactggcacaaaattccaccaaatgttaaacataataaa
aaaaaagagaatttcaaacaaaaccctcaattaacactgaaagccaaaaa
ccagccaagcaaagaaactagaaaataaaatccaaagcacataatggtaa
gactcaaataacccccagggtggtggcacaaactttagtcccaggactga
ggaagcagagggaggtagatctctcagtttaagccagcctggtctacaga
gcaagttcgaggacacccaggctacacattaaaaaaccctgtctcaggaa
aaaagataaacaaaaaaccaaacaaacaaaaccctccatatccaagactg
ggtgatagtttagcaaacacaagaacaactttcagtctttagaatcctgt
gttaaacagtcaactgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_13270510_13271407
seq2: B6Ng01-031M15.b_43_937

seq1  GAATTCATAAATTGTAATATAGGACAATACCCAGACATAATGAATCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAATTGTAATATAGGACAATACCCAGACATAATGAATCCATT  50

seq1  GCTGCTCAGGCTTCTCTCTTGGCTGTGTGGACCCTGGCCCAGCCACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCAGGCTTCTCTCTTGGCTGTGTGGACCCTGGCCCAGCCACAGGC  100

seq1  CTGCTGAATCTAGCTGAGTCTTCATATGCAAGCCAGTGCTATTATGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAATCTAGCTGAGTCTTCATATGCAAGCCAGTGCTATTATGGTCT  150

seq1  TTGTTCTACCCCTGAAGTTTTTATAGGCTAGCGAGCACAGGTGTGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTACCCCTGAAGTTTTTATAGGCTAGCGAGCACAGGTGTGGACAG  200

seq1  GAGAGAAATTACTTTTTCAGTAACTTTTGGCATACACTCTGCATTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATTACTTTTTCAGTAACTTTTGGCATACACTCTGCATTGAAAA  250

seq1  ATTACACTTGCTTGTTCACAAGTGCCCTATGGGGTTGTTGGTGGATGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTTGCTTGTTCACAAGTGCCCTATGGGGTTGTTGGTGGATGGTA  300

seq1  GCCAGGTCTGATGAAAAACATAAAAGGGTTTGATAGGCAGATGTGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCTGATGAAAAACATAAAAGGGTTTGATAGGCAGATGTGGTCTT  350

seq1  TGAATCTTGGCTGGTCTGTGCGGAATGTATCTGAAATGCATCACTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTGGCTGGTCTGTGCGGAATGTATCTGAAATGCATCACTTAACT  400

seq1  GTATATCAGTTTCTGAGTTCTATCACTGTCCGTATGTACAGCTCACATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCAGTTTCTGAGTTCTATCACTGTCCGTATGTACAGCTCACATTC  450

seq1  TCCAGAGCACCCTCACGTGAAAGTTCGAAAAGAAAACGTCACAGTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCACCCTCACGTGAAAGTTCGAAAAGAAAACGTCACAGTCCCCT  500

seq1  CTTGCCATTTCTGGGTGTTCAGCAAAGTTCAGCAAAGACCATTTTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTTCTGGGTGTTCAGCAAAGTTCAGCAAAGACCATTTTGCATT  550

seq1  GATTCTGCACCAGGCAGTCACAGGATTGTTGAGGTTTTGTCGGTTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCACCAGGCAGTCACAGGATTGTTGAGGTTTTGTCGGTTGCTAT  600

seq1  GTGCTGTAATGCTCAATTCTATAACCCAAGTCTACGTGCCTCAAAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTAATGCTCAATTCTATAACCCAAGTCTACGTGCCTCAAAATGAG  650

seq1  TGAATTCTCTTGTGTGCCAGCTTCTGTTGTGCAAACTTTGTGCCTTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCTTGTGTGCCAGCTTCTGTTGTGCAAACTTTGTGCCTTAGTT  700

seq1  TAAAGCTATTGGTTAATAAAGATGCCAACAGCTCATAGCTGGGAGAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTATTGGTTAATAAAGATGCCAACAGCTCATAGCTGGGAGAGATA  750

seq1  TGTGGAATTTTGGTTCCTGGACTTGAGGTCTGAGGCAGATACCATGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATTTTGGTTCCTGGACTTGAGGTCTGAGGCAGATACCATGAGGG  800

seq1  AGAGGAGAAGAGGAAGGAAAAAGACACCATGGGGTCATGAGAGTCAGCCT  850
      |||||||||||||| ||  |||||||||||||||||||||||||||||||
seq2  AGAGGAGAAGAGGAGGG--AAAGACACCATGGGGTCATGAGAGTCAGCCT  848

seq1  GTTGGAATAGAATCATGGTGGAAGATGGGATTATTGATAGGGAAGTAG  898
      || ||||||||||||||||||||||||||| ||| ||||||||||| |
seq2  GTGGGAATAGAATCATGGTGGAAGATGGGA-TATGGATAGGGAAGTTG  895

seq1: chr17_13425631_13426661
seq2: B6Ng01-031M15.g_70_1086 (reverse)

seq1  TACTCAGTTGACTGTTTTTACACAGGATTTCTAAAGACTGAAAGTTGGTT  50
      |||||||||||||| ||| |||||||| |||||||||||||||||| |||
seq2  TACTCAGTTGACTG-TTTAACACAGGA-TTCTAAAGACTGAAAGTT-GTT  47

seq1  CTTGTGTTTTGCTAAACTATCACCCAGTCTGTGGATATTGGAGGGTTTTG  100
      |||||| ||||||||||||||||||||||| |||||| ||||||||||||
seq2  CTTGTG-TTTGCTAAACTATCACCCAGTCT-TGGATA-TGGAGGGTTTTG  94

seq1  TTTTGTTTTGGTTTTTTGTTTATCTTTTTTTCCTGAGACAGGGTTTTTTT  150
      |||   |||||||||||||||||| ||||||||||||||||||  |||||
seq2  TTT--GTTTGGTTTTTTGTTTATC-TTTTTTCCTGAGACAGGG--TTTTT  139

seq1  TAATGTGTAGCCCTGGGTGTCCTCGAACTTGCTCTGTAGACCAGGCTGGC  200
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TAATGTGTAG-CCTGGGTGTCCTCGAACTTGCTCTGTAGACCAGGCTGG-  187

seq1  CTTAAACTGAGAGATCTACCTCCCTCTGCTTCCTCAGTCCTGGGACTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTGAGAGATCTACCTCCCTCTGCTTCCTCAGTCCTGGGACTAAA  237

seq1  GTTGTGTGCCACCACCCTGGGGGTTATTTGAGTCTTACCATTATGTGCTT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTT-TGTGCCACCACCCTGGGGGTTATTTGAGTCTTACCATTATGTGCTT  286

seq1  TGGATTTTATTTTCTAGTTTCTTTGCTTGGCTGGTTTTTGGCTTTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTATTTTCTAGTTTCTTTGCTTGGCTGGTTTTTGGCTTTCAGTG  336

seq1  TTAATTGAGGGTTTTGTTTGAAATTCTCTTTTTTTTTATTATGTTTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAGGGTTTTGTTTGAAATTCTCTTTTTTTTTATTATGTTTAACA  386

seq1  TTTGGTGGAATTTTGTGCCAGTTTTAGCTTTCTGACTTTTGTTCTTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGAATTTTGTGCCAGTTTTAGCTTTCTGACTTTTGTTCTTATAG  436

seq1  ATTTTCTTATTCATTGTAGTTTGGTTGTTTCTGTTTTGGATTTGTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTATTCATTGTAGTTTGGTTGTTTCTGTTTTGGATTTGTTTGGG  486

seq1  GCTTTAATATTTTATTTTCTTTTGTTTTGTTTTCTTTTGTTTTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATATTTTATTTTCTTTTGTTTTGTTTTCTTTTGTTTTATATTTT  536

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTGACTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTTCTGGAACTGACTCTGAA  586

seq1  GGACAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  636

seq1  GCTGGGATCAAAGGTTGGGCCACCACTGCCCAGCTTTTTTATGGTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATCAAAGGTTGGGCCACCACTGCCCAGCTTTTTTATGGTTTTTA  686

seq1  AATGTCATAATATTTTTTTGAGAACTTCAGATATCCATTAAATATATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATAATATTTTTTTGAGAACTTCAGATATCCATTAAATATATCTG  736

seq1  GATCCTAGTCAACCCCTGCCCTTCCCTGACTCATGCCAGATGCAGCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGTCAACCCCTGCCCTTCCCTGACTCATGCCAGATGCAGCCCCA  786

seq1  CAGTCACTCCAACAACCCACAAAATTCATGTCCTATTTTAATAACCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTCCAACAACCCACAAAATTCATGTCCTATTTTAATAACCTGCT  836

seq1  GTCATATGTTCATGAGTGTGGGGGCATCCACTGGAGTGGTTGATCTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATGTTCATGAGTGTGGGGGCATCCACTGGAGTGGTTGATCTACCA  886

seq1  GGGCTACATCCTTCAGGAGGAATGACTCTTTTCTGGATGTCATCAACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACATCCTTCAGGAGGAATGACTCTTTTCTGGATGTCATCAACTGT  936

seq1  CAATGTTTCTGGGATGGGTTAGTCAGGGTGCAATTCTTGATTTGGGGCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTCTGGGATGGGTTAGTCAGGGTGCAATTCTTGATTTGGGGCAG  986

seq1  ATTTCATGCTGGAAGCCAGAGCTGTTGTGAA  1031
      |||||||||||||||||||||||||||||||
seq2  ATTTCATGCTGGAAGCCAGAGCTGTTGTGAA  1017