BAC Information

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BAC

Clone NameB6Ng01-033C08
Chromosome17 (Build37)
Map Location 56,165,934 - 56,296,938
singlet/doubletdoublet
Overlap geneSh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd
Downstream geneTnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033C08.bB6Ng01-033C08.g
ACCDH862282DH862283
length1,044940
definitionDH862282|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C08, 5' end.DH862283|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,165,934 - 56,166,987)(56,295,995 - 56,296,938)
sequence
gaattccagtggccatgtgctctgtgagtcactcataccttcctacagag
gctgcccattactggccttgtcagttagacagcactgtacatatttggga
tgcttgggtgcttgtcaagacactggctagttagagccaccctgtctagg
tgttgctggtcttacaataactattatttttgtctgtaaggttcaagagg
gaaaagagatgattgacctaagcacaaacacaaccagcaggtcataggag
gtgctaggcccgactgggagggaggagtgggcacctgtgtggaaatagcc
agacaagagggatgccagtggcctgtcagatgagcaagaggaacccggca
tgggacatagtcccattaaaactgccaacacgttcctcaggagagcacat
gaaattagtctcagaggtgccctaccttcctgcaacccatgcccttagac
actgtgagctccagaggcactgcaggaaggagttaatgaggattatgcag
tgcaggacacccacagggttaacctggtcaatgtgttttgtgcataaacc
tggacatattgccagcttcctgaatgaacattcagcagtgcctgtgacca
gtgatttattgtcagtgcccaggggacaagtgtacagagctgaaggttgg
gtctgcacagcacaggaagtgccttcagtcagtaacaagggcaagggctc
agaatactggcttccattctctaaaggcccagatactgatcctggtcctt
agatctatgagtgtgccctcgttaggaactgtgggatccctaaaagcaaa
aaggcctattgacagagactgaaacctccttactaagccagaacaaacct
ctctcggcaaaactgcccctcccaggcatgttgttacgtgactgaagcag
agtgaagatgactttcagaggcaggtccactcaaacatctctcaagtcac
cagtgcagactctaatttggaacgacactgaatacttcattcacagctac
acagcacacagcatcctgacgagctcagcttttggggcctgtga
gaattcttcctttactgggctttaacttccccctcggcaaaacaggtaac
atttctcaaatgtttgtcacctttcaaatgtcaaggctgtcccaggctag
ccttggctatgccagactgtgtctcaaaagacaaagaacaaactggaaag
tacagctacaaggaagggtaggtgtccacgacacggagtgtaagagacca
tgcaaccacccttcggaggactctgttcaaccgaacaagctatacccctg
acctctgcccagccctctggctgggagattctaggtgggttccatcctga
ccatgcccctagctccttgggcaacttctttactaggatagaatctggga
ggtctttctgtagaaggggttttgatttctgagaaagggttcccccttta
cagtccaggttggtcttgaatgtacaattctcctgtctcagcttcttagg
gtctcagtttcctggcctgtccacaacactccatttggaggagagtccag
tccaactgaactctgcccatgtgtccaactgttcactgagcatgagaaca
agcgtgtccactggaggtgacaatcctgtacacagatgttcctaacccca
gtcaccagagctgggatgggaacactgagcaccccagaagtcccctgagg
caacaccccaaaggtgtgagtgtgagccagaggcagagtgctcacctgtg
cctggtttcctgcggcagcaaggaccctgaagttaatggctgcaggctca
ctcatcccaggctttcatgtggacgggcatcaggagctgggagaatctat
gtattaatgatgtgtctcaggtcctgccacctaggagcccaagggatggc
cactgccattttctggcacccccaagggaaaaaccctgggttagttcaag
gggagaggctgtgaacctcggcattctcagcttctgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56165934_56166987
seq2: B6Ng01-033C08.b_44_1087

seq1  GAATTCCAGTGGCCATGTGCTCTGTGAGTCACTCATACCTTCCTACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGCCATGTGCTCTGTGAGTCACTCATACCTTCCTACAGAG  50

seq1  GCTGCCCATTACTGGCCTTGTCAGTTAGACAGCACTGTACATATTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCATTACTGGCCTTGTCAGTTAGACAGCACTGTACATATTTGGGA  100

seq1  TGCTTGGGTGCTTGTCAAGACACTGGCTAGTTAGAGCCACCCTGTCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGTGCTTGTCAAGACACTGGCTAGTTAGAGCCACCCTGTCTAGG  150

seq1  TGTTGCTGGTCTTACAATAACTATTATTTTTGTCTGTAAGGTTCAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGGTCTTACAATAACTATTATTTTTGTCTGTAAGGTTCAAGAGG  200

seq1  GAAAAGAGATGATTGACCTAAGCACAAACACAACCAGCAGGTCATAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGATGATTGACCTAAGCACAAACACAACCAGCAGGTCATAGGAG  250

seq1  GTGCTAGGCCCGACTGGGAGGGAGGAGTGGGCACCTGTGTGGAAATAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGCCCGACTGGGAGGGAGGAGTGGGCACCTGTGTGGAAATAGCC  300

seq1  AGACAAGAGGGATGCCAGTGGCCTGTCAGATGAGCAAGAGGAACCCGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAGGGATGCCAGTGGCCTGTCAGATGAGCAAGAGGAACCCGGCA  350

seq1  TGGGACATAGTCCCATTAAAACTGCCAACACGTTCCTCAGGAGAGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACATAGTCCCATTAAAACTGCCAACACGTTCCTCAGGAGAGCACAT  400

seq1  GAAATTAGTCTCAGAGGTGCCCTACCTTCCTGCAACCCATGCCCTTAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGTCTCAGAGGTGCCCTACCTTCCTGCAACCCATGCCCTTAGAC  450

seq1  ACTGTGAGCTCCAGAGGCACTGCAGGAAGGAGTTAATGAGGATTATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGCTCCAGAGGCACTGCAGGAAGGAGTTAATGAGGATTATGCAG  500

seq1  TGCAGGACACCCACAGGGTTAACCTGGTCAATGTGTTTTGTGCATAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACACCCACAGGGTTAACCTGGTCAATGTGTTTTGTGCATAAACC  550

seq1  TGGACATATTGCCAGCTTCCTGAATGAACATTCAGCAGTGCCTGTGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATATTGCCAGCTTCCTGAATGAACATTCAGCAGTGCCTGTGACCA  600

seq1  GTGATTTATTGTCAGTGCCCAGGGGACAAGTGTACAGAGCTGAAGGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTATTGTCAGTGCCCAGGGGACAAGTGTACAGAGCTGAAGGTTGG  650

seq1  GTCTGCACAGCACAGGAAGTGCCTTCAGTCAGTAACAAGGGCAAGGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACAGCACAGGAAGTGCCTTCAGTCAGTAACAAGGGCAAGGGCTC  700

seq1  AGAATACTGGCTTCCATTCTCTAAAGGCCCAGATACTGATCCTGGTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTGGCTTCCATTCTCTAAAGGCCCAGATACTGATCCTGGTCCTT  750

seq1  AGATCTATGAGTGTGCCCTCGTTAGGAACTGTGGGATCCCT-AAAGCAAA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGATCTATGAGTGTGCCCTCGTTAGGAACTGTGGGATCCCTAAAAGCAAA  800

seq1  AAGGCCTA-TGACAGAGACTGAAACCTCCTAACTAAGCCAGAACAAACCT  848
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AAGGCCTATTGACAGAGACTGAAACCTCCTTACTAAGCCAGAACAAACCT  850

seq1  CTCTCGGCAAAACTGCCCCTCCCAGGCATGTTGTTACAGTGACTGAAAGC  898
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CTCTCGGCAAAACTGCCCCTCCCAGGCATGTTGTTAC-GTGACTG-AAGC  898

seq1  AGAGTGAAGATGACTTTCAGAGGCCAGGTCCCACTCAACACATCTCTCAA  948
      ||||||||||||||||||||||| ||||| |||||||| |||||||||||
seq2  AGAGTGAAGATGACTTTCAGAGG-CAGGT-CCACTCAA-ACATCTCTCAA  945

seq1  GTCACCAGTGCAGGACCCTTAATTTGGAACGACACTGGACTACTTCAGTC  998
      |||||||||||| ||| | ||||||||||||||||| || ||||||| ||
seq2  GTCACCAGTGCA-GACTC-TAATTTGGAACGACACT-GAATACTTCATTC  992

seq1  ACAGCCAACAGCAGCACACCAGCATCCTGACAGAGCTCAGCTTCTGTGGC  1048
      |||| | ||| ||||||| |||||||||||| ||||||||||| || |||
seq2  ACAG-CTACA-CAGCACA-CAGCATCCTGAC-GAGCTCAGCTTTTGGGGC  1038

seq1  CTGTGA  1054
      ||||||
seq2  CTGTGA  1044

seq1: chr17_56295995_56296938
seq2: B6Ng01-033C08.g_70_1009 (reverse)

seq1  AACCCAGAAAGCAGAGAATTGCCGAGGTTCACAGCCTCACCCCTTGGAAC  50
      ||||||| |||| ||||| ||||||||||||||||||| |||||| ||||
seq2  AACCCAG-AAGCTGAGAA-TGCCGAGGTTCACAGCCTCTCCCCTT-GAAC  47

seq1  TAACCCAGGTGTCTTTTCCCTTGGGGGTGCCAGAAAATGGCAGTGGCCAT  100
      ||||||||| || |||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGG-GT-TTTTCCCTTGGGGGTGCCAGAAAATGGCAGTGGCCAT  95

seq1  CCCTTGGGCTCCTAGGTGGCAGGACCTGAGACACATCATTAATACATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGCTCCTAGGTGGCAGGACCTGAGACACATCATTAATACATAGA  145

seq1  TTCTCCCAGCTCCTGATGCCCGTCCACATG-AAGCCTGGGATGAGTGAGC  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCTCCCAGCTCCTGATGCCCGTCCACATGAAAGCCTGGGATGAGTGAGC  195

seq1  CTGCAGCCATTAACTTCAGGGTCCTTGCTGCCGCAGGAAACCAGGCACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCCATTAACTTCAGGGTCCTTGCTGCCGCAGGAAACCAGGCACAG  245

seq1  GTGAGCACTCTGCCTCTGGCTCACACTCACACCTTTGGGGTGTTGCCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCACTCTGCCTCTGGCTCACACTCACACCTTTGGGGTGTTGCCTCA  295

seq1  GGGGACTTCTGGGGTGCTCAGTGTTCCCATCCCAGCTCTGGTGACTGGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTCTGGGGTGCTCAGTGTTCCCATCCCAGCTCTGGTGACTGGGG  345

seq1  TTAGGAACATCTGTGTACAGGATTGTCACCTCCAGTGGACACGCTTGTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACATCTGTGTACAGGATTGTCACCTCCAGTGGACACGCTTGTTC  395

seq1  TCATGCTCAGTGAACAGTTGGACACATGGGCAGAGTTCAGTTGGACTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCAGTGAACAGTTGGACACATGGGCAGAGTTCAGTTGGACTGGA  445

seq1  CTCTCCTCCAAATGGAGTGTTGTGGACAGGCCAGGAAACTGAGACCCTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCAAATGGAGTGTTGTGGACAGGCCAGGAAACTGAGACCCTAA  495

seq1  GAAGCTGAGACAGGAGAATTGTACATTCAAGACCAACCTGGACTGTAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAGACAGGAGAATTGTACATTCAAGACCAACCTGGACTGTAAAG  545

seq1  GGGGAACCCTTTCTCAGAAATCAAAACCCCTTCTACAGAAAGACCTCCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACCCTTTCTCAGAAATCAAAACCCCTTCTACAGAAAGACCTCCCA  595

seq1  GATTCTATCCTAGTAAAGAAGTTGCCCAAGGAGCTAGGGGCATGGTCAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATCCTAGTAAAGAAGTTGCCCAAGGAGCTAGGGGCATGGTCAGG  645

seq1  ATGGAACCCACCTAGAATCTCCCAGCCAGAGGGCTGGGCAGAGGTCAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCCACCTAGAATCTCCCAGCCAGAGGGCTGGGCAGAGGTCAGGG  695

seq1  GTATAGCTTGTTCGGTTGAACAGAGTCCTCCGAAGGGTGGTTGCATGGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTTGTTCGGTTGAACAGAGTCCTCCGAAGGGTGGTTGCATGGTC  745

seq1  TCTTACACTCCGTGTCGTGGACACCTACCCTTCCTTGTAGCTGTACTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACTCCGTGTCGTGGACACCTACCCTTCCTTGTAGCTGTACTTTC  795

seq1  CAGTTTGTTCTTTGTCTTTTGAGACACAGTCTGGCATAGCCAAGGCTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTCTTTGTCTTTTGAGACACAGTCTGGCATAGCCAAGGCTAGC  845

seq1  CTGGGACAGCCTTGACATTTGAAAGGTGACAAACATTTGAGAAATGTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGCCTTGACATTTGAAAGGTGACAAACATTTGAGAAATGTTAC  895

seq1  CTGTTTTGCCGAGGGGGAAGTTAAAGCCCAGTAAAGGAAGAATTC  944
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCCGAGGGGGAAGTTAAAGCCCAGTAAAGGAAGAATTC  940