BAC Information

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BAC

Clone NameB6Ng01-034B21
Chromosome17 (Build37)
Map Location 56,365,417 - 56,526,324
singlet/doubletdoublet
Overlap geneLOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9
Downstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034B21.bB6Ng01-034B21.g
ACCDH862970DH862971
length9891,044
definitionDH862970|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B21, 5' end.DH862971|Mus musculus domesticus DNA, BAC clone: B6Ng01-034B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,525,347 - 56,526,324)(56,365,417 - 56,366,460)
sequence
gaattcactttgtagaccaggttggcctcgaactcagaaatccgcctgcc
tctgcctcccgagtgctgggattaaaggcatgtgccaccatgcccagctg
acacctgagttctatgaagtctcatagctgtggctcatgttcagctctga
gggctatccttggcctcttagaatctcaaaccctgaggagttgcaggagg
caaggagtaggatggacacctggagtgaggggctgagcctagccatgtag
gtctccctcttagaaaatggagtcaggttcctccccaaacctgttaccta
cactgccacctctaactagggacatgggcactatgggtgatcgatcacac
tactgtaaggagcagggcagtacggtccactcatccttaggagcagggca
tctggtattggcttggccctatgaatgcttgcaggggacctgccagctct
ctgaaatgcaagggtaccaggattacatcaccaagtaagtagcagcaagc
attcagatgcccggggaaagggtctgaggctctgcctgggatgaccagac
aactcctgttatagaagcagaaataagtaagagagtggagggagagggag
ggcactgggggcagccactcacctgcgcaggagcttggccttgatggagg
tgcgcgaggcactccaggagctgagctcagactgctcagggctgtgggcc
tcgtgtggttcagcactgtgaggtcacggccttgcttccattgctcatag
cgttcgggctgcaggatgcgtaacaaacacgtccatggagatcttgacca
tgtcctttcacatgtacactgttggaaacacgcagaggcactgaattctc
acacaagcacctgcctccacgctgcgacacagcccagtatgagatgagac
tgctagttcaagccccttctcttggctcaccacatgtaggcagacccaaa
gacccctagaggaaatgcccctgattgatgaatgccatc
gaattctgttatgaaacaactgctggggctactgtcaaatcaaaaacata
ggtgcaaggggcactggaccgccgaagagaggtagacttggtagtaggat
ggataactcattcatttatggttattcctaggtacccatgacccctgctg
ggaagagagacctcaccaaaatgggagcccaaatccattttagcccagag
ggagtggaggtgctgggtatgaatggccccgtccatgctctgaccttggc
tctagagaaggaacacaaactgttccctcagccagccccatctccaagca
gaactccccaatgtctgggtagaaaaaaaaaaatccaatgggacctgcct
gacattgggccccagttttagttcagttaaaagctgagggtaggggctgg
tgagatggctcagatggttaagagcaccgactgctcttccaaaggtcctg
agttcaaatcccagcaaccacatggtggctcacaaccatctgtaacaaga
tctgatgccctcttctggagtgtctgaagacagctacactgtacttacat
ataataaataaataaatctttaaaaaaaaaaaaaaagctgggggtacccc
agcccaaatcaggcaatatccaatgcccagagaagccagaacagggatca
ccccctcacattagctggctctgagaagcaggaattctgcttctttgcca
atcagtacttggtgagtaccagtgagcccgccccaatagcagtgctccag
tatgtattccaaacccccgacttgggagacatgacaggcggccacatgag
acttgctgcaggagctgagtcatcttggctacagagtgtctgctaaaaag
gcccagctttgtcaacttcaggtcacctatctggggtactttgaagtgga
aatttctagttctttggaaagaaagttattgcaaatgttgtctaaggata
caaaggtgaaaggctgtcttcttaaaacaatatacgtgaagacacaagaa
aaggtagtttggaatatagcatccgtgtgaaagacctcttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56525347_56526324
seq2: B6Ng01-034B21.b_44_1018 (reverse)

seq1  ATCAGTGGGCATTCCCTCTGGGGGTCTTTGGGTCTGGCCTACCTGTGGTG  50
      ||||| ||||||| ||||| ||||||||||||||| |||||| |||||||
seq2  ATCAG-GGGCATTTCCTCTAGGGGTCTTTGGGTCT-GCCTACATGTGGTG  48

seq1  AGGCCAGAG-AGGGGCCTGAACTAGCAGTCTCATCTCATACTGGGCTGTG  99
      || | |||| |||||| |||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGAAGGGGCTTGAACTAGCAGTCTCATCTCATACTGGGCTGTG  98

seq1  TCCGCAGCGTGGGAGGCAGGTGCCTGGTGTGAG-ACTCAGTGCCTCTGCG  148
      | |||||||| ||||||||||| || ||||||| | ||||||||||||||
seq2  T-CGCAGCGT-GGAGGCAGGTG-CTTGTGTGAGAATTCAGTGCCTCTGCG  145

seq1  TGTTTCC-ACAGTGTACATGTCGAAAGGACATGGTCAAGATCTCCATGGA  197
      ||||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTTCCAACAGTGTACATGT-GAAAGGACATGGTCAAGATCTCCATGGA  194

seq1  CGTGTTTG-TACGCATCCTGCAGCCCGAACGCTATGAGCAATGGAAGCAA  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTGTTACGCATCCTGCAGCCCGAACGCTATGAGCAATGGAAGCAA  244

seq1  GGCCGTGACCTCACAGTGCTGGACCACACGAGGCCCACAGCCCTGAGCAG  296
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCGTGACCTCACAGTGCTGAACCACACGAGGCCCACAGCCCTGAGCAG  294

seq1  TCCTGAGCTCAGCTCCTGGAGTGCCTCGCGCACCTCCATCAAGGCCAAGC  346
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTGAGCTCAGCTCCTGGAGTGCCTCGCGCACCTCCATCAAGGCCAAGC  343

seq1  TCCTGCGCAGGTGAGTGGCTGCCCCCAGTGCCCTCCCTCTCCCTCCACTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCGCAGGTGAGTGGCTGCCCCCAGTGCCCTCCCTCTCCCTCCACTC  393

seq1  TCTTACTTATTTCTGCTTCTATAACAGGAGTTGTCTGGTCATCCCAGGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTATTTCTGCTTCTATAACAGGAGTTGTCTGGTCATCCCAGGCA  443

seq1  GAGCCTCAGACCCTTTCCCCGGGCATCTGAATGCTTGCTGCTACTTACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAGACCCTTTCCCCGGGCATCTGAATGCTTGCTGCTACTTACTT  493

seq1  GGTGATGTAATCCTGGTACCCTTGCATTTCAGAGAGCTGGCAGGTCCCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTAATCCTGGTACCCTTGCATTTCAGAGAGCTGGCAGGTCCCCT  543

seq1  GCAAGCATTCATAGGGCCAAGCCAATACCAGATGCCCTGCTCCTAAGGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTCATAGGGCCAAGCCAATACCAGATGCCCTGCTCCTAAGGAT  593

seq1  GAGTGGACCGTACTGCCCTGCTCCTTACAGTAGTGTGATCGATCACCCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGACCGTACTGCCCTGCTCCTTACAGTAGTGTGATCGATCACCCAT  643

seq1  AGTGCCCATGTCCCTAGTTAGAGGTGGCAGTGTAGGTAACAGGTTTGGGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCATGTCCCTAGTTAGAGGTGGCAGTGTAGGTAACAGGTTTGGGG  693

seq1  AGGAACCTGACTCCATTTTCTAAGAGGGAGACCTACATGGCTAGGCTCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGACTCCATTTTCTAAGAGGGAGACCTACATGGCTAGGCTCAG  743

seq1  CCCCTCACTCCAGGTGTCCATCCTACTCCTTGCCTCCTGCAACTCCTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCACTCCAGGTGTCCATCCTACTCCTTGCCTCCTGCAACTCCTCAG  793

seq1  GGTTTGAGATTCTAAGAGGCCAAGGATAGCCCTCAGAGCTGAACATGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAGATTCTAAGAGGCCAAGGATAGCCCTCAGAGCTGAACATGAGC  843

seq1  CACAGCTATGAGACTTCATAGAACTCAGGTGTCAGCTGGGCATGGTGGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTATGAGACTTCATAGAACTCAGGTGTCAGCTGGGCATGGTGGCA  893

seq1  CATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAG  943

seq1  TTCGAGGCCAACCTGGTCTACAAAGTGAATTC  978
      ||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAACCTGGTCTACAAAGTGAATTC  975

seq1: chr17_56365417_56366460
seq2: B6Ng01-034B21.g_68_1111

seq1  GAATTCTGTTATGAAACAACTGCTGGGGCTACTGTCAAATCAAAAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATGAAACAACTGCTGGGGCTACTGTCAAATCAAAAACATA  50

seq1  GGTGCAAGGGGCACTGGACCGCCGAAGAGAGGTAGACTTGGTAGTAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAGGGGCACTGGACCGCCGAAGAGAGGTAGACTTGGTAGTAGGAT  100

seq1  GGATAACTCATTCATTTATGGTTATTCCTAGGTACCCATGACCCCTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTCATTCATTTATGGTTATTCCTAGGTACCCATGACCCCTGCTG  150

seq1  GGAAGAGAGACCTCACCAAAATGGGAGCCCAAATCCATTTTAGCCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGACCTCACCAAAATGGGAGCCCAAATCCATTTTAGCCCAGAG  200

seq1  GGAGTGGAGGTGCTGGGTATGAATGGCCCCGTCCATGCTCTGACCTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAGGTGCTGGGTATGAATGGCCCCGTCCATGCTCTGACCTTGGC  250

seq1  TCTAGAGAAGGAACACAAACTGTTCCCTCAGCCAGCCCCATCTCCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGAAGGAACACAAACTGTTCCCTCAGCCAGCCCCATCTCCAAGCA  300

seq1  GAACTCCCCAATGTCTGGGTAGAAAAAAAAAAATCCAATGGGACCTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCCCAATGTCTGGGTAGAAAAAAAAAAATCCAATGGGACCTGCCT  350

seq1  GACATTGGGCCCCAGTTTTAGTTCAGTTAAAAGCTGAGGGTAGGGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGGCCCCAGTTTTAGTTCAGTTAAAAGCTGAGGGTAGGGGCTGG  400

seq1  TGAGATGGCTCAGATGGTTAAGAGCACCGACTGCTCTTCCAAAGGTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGCTCAGATGGTTAAGAGCACCGACTGCTCTTCCAAAGGTCCTG  450

seq1  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGA  500

seq1  TCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACACTGTACTTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACACTGTACTTACAT  550

seq1  ATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAGCTGGGGGTACCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAGCTGGGGGTACCCC  600

seq1  AGCCCAAATCAGGCAATATCCAATGCCCAGAGAAGCCAGAACAGGGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAATCAGGCAATATCCAATGCCCAGAGAAGCCAGAACAGGGATCA  650

seq1  CCCCCTCACATTAGCTGGCTCTGAGAAGCAGGAATTCTGCTTCTTTGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCACATTAGCTGGCTCTGAGAAGCAGGAATTCTGCTTCTTTGCCA  700

seq1  ATCAGTACTTGGTGAGTACCAGTGAGCCCGCCCCAAATAGCAGTGCTCCA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCAGTACTTGGTGAGTACCAGTGAGCCCGCCCC-AATAGCAGTGCTCCA  749

seq1  GTATGTATTCCAAACCCCCGACTT-GGAGACATGACAGGCGGCCACATGA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTATGTATTCCAAACCCCCGACTTGGGAGACATGACAGGCGGCCACATGA  799

seq1  GACCTGCTGCAGGAGCTGAGTCATCTTGGCTACAGAGTGTCTGCTAAAAA  849
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTGCAGGAGCTGAGTCATCTTGGCTACAGAGTGTCTGCTAAAAA  849

seq1  GGCCCAGCTTTGTCAACTTCAGGTCACCTATCTGGGGTACATTGAAGTGG  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGCCCAGCTTTGTCAACTTCAGGTCACCTATCTGGGGTACTTTGAAGTGG  899

seq1  AAATTTCTAGTTCTTTGGAAAGTAAGTTATGCCAAATGTTGTTCTAGGAT  949
      |||||||||||||||||||||| |||||||  ||||||||||   |||||
seq2  AAATTTCTAGTTCTTTGGAAAGAAAGTTATTGCAAATGTTGTCTAAGGAT  949

seq1  ACACAGGTGAAAGGCTGTCTTCTTAAAACAA-ATACGTGAAAGACACAGG  998
      ||| ||||||||||||||||||||||||||| ||||||| |||||||| |
seq2  ACAAAGGTGAAAGGCTGTCTTCTTAAAACAATATACGTG-AAGACACAAG  998

seq1  TAAAAGGATGTTTGG-ATATAGCAGTCATGTGAAAAGACTCTTGATG  1044
       ||||||  |||||| ||||||||  | |||||||   |||||||||
seq2  -AAAAGGTAGTTTGGAATATAGCATCCGTGTGAAAGACCTCTTGATG  1044