BAC Information

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BAC

Clone NameB6Ng01-034E07
Chromosome17 (Build37)
Map Location 31,912,466 - 32,085,773
singlet/doubletdoublet
Overlap geneSnf1lk, Hsf2bp
Upstream geneDnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa
Downstream geneRrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034E07.bB6Ng01-034E07.g
ACCDH863070DH863071
length833981
definitionDH863070|Mus musculus domesticus DNA, BAC clone: B6Ng01-034E07, 5' end.DH863071|Mus musculus domesticus DNA, BAC clone: B6Ng01-034E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,084,936 - 32,085,773)(31,912,466 - 31,913,453)
sequence
gaattcaaggcccagttttgtcttgaactcacagtggtcctcctgcctta
gctctctagttatagacatcagctccacatccaatatttttactctcaac
tgtattgatttctgcacatatctttattagttttgcatgtcttattttag
cccctttccctcagtctcacaagattaaggtaaagataattagaaaggat
tttatttttgatgcctgctttagtgtttctccttgctgctctctacttgt
gcctgggtttctctggagtattctgtagcagccaccctgccctatacttt
catacctcttacctcttctctcgaatagaaagatttcagtagtctccgtg
cccctccttcaatgaagagcaggttttattttagccttccctaactacaa
cccccacctttgttctataaaagaagtctatggtttgggctaagggagta
gtgtgttcagtcccactgacttcttgaaaggtccttttgagtgagtgtac
tgctaagaaagaggagctggttgtatgcatggctcccattacagctccca
gcctatagtgtatccaccagaagaggaatggttagagtttatcctggcta
acgattatagctttgacttaggctattattttggtctacttttcagtggt
tattataatataagcagggttataagctctgtaactcctgaggagcattc
agatggaaagcagtgaaatacattgtggatcttgagcctatgtgtggtgg
gtttagtaagaatggccccataggctcatacatttgattcctagatggta
gactgggaaggattagagtgtgatcttggtagg
gaattcatgggatggtgcagatgagaaagctggacacaacctgcttgctc
aggactaggggagcgttctggagtaataggtctgcctgagagcctaaaac
tattaaaggtgtcgtcttggttacttttgttttgctgtgacaaaacacct
cgaacaaggcaacttatcaaagaaaggggtccgttggctatggttccaga
tggtcacaatccatgacgctggaacgaagggacagctaagagctcacgtc
tcaattcacaaccacacagtgggaattgcttgcttgacctcaaagcttgt
cccccagtgacacacctcctaaccctttccaaagttttacaagctgggaa
ccaagtatttaaatatatgagcgtataagggagccattctcattcaaaat
caccaaagctgtatagctgaagagttgagtagacctgaaacacttaccct
cctttgcagtgtagaaacattatatccattctccaaccccaagaaaggac
cacaacctggggtgtgtaatgctggctggctgcaccagaagttagggtgt
ggcgcggcagagcagcatacccctgcaatagtgggactctctgatttccc
actattggttgaaggtgggaaggaggtggcttatccatactgtgacggac
tgcccttgtgctagagagctggctgagtttccccattcctcaaacctgtt
tgagctccaccctgtctctccaggtgtctgagctccacagtgaaagagtc
acagcagagagccccatgactgcaagtgtcccccaagtttgctgtttcct
ggggtggcttcttttccgcagatttgacccaggaaccctagtacagggcc
ctccttgaacttgggggatcctggtgatctactaccgtccaagaaaatcc
tggacacctgaagagttccgactggggaacattgacaacctccttgtaaa
ttgcttggcagtgaaacaccctggtgctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32084936_32085773
seq2: B6Ng01-034E07.b_46_878 (reverse)

seq1  CCTAACAAGATCACACCTCCTAATCCTTCCCAGTCTACCATCTAGGAATC  50
      |||| |||||||||||   |||||||||||||||||||||||||||||||
seq2  CCTACCAAGATCACAC--TCTAATCCTTCCCAGTCTACCATCTAGGAATC  48

seq1  AAATGTATGAGCCTATGGGGGCCATTCTTACTAAAACCACCACACATAGG  100
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  AAATGTATGAGCCTAT-GGGGCCATTCTTACTAAACCCACCACACATAGG  97

seq1  CTACAAGATCCACAATGTATTTCACTGCTTTCCATCTGAATGCTCCTCAG  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CT-CAAGATCCACAATGTATTTCACTGCTTTCCATCTGAATGCTCCTCAG  146

seq1  GAGTTACAGAGCCTTATAACCCTGCTTATATTATAATAACCACTGAAAAG  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACAGAG-CTTATAACCCTGCTTATATTATAATAACCACTGAAAAG  195

seq1  TAGACCAAAATAATAGCCTAAGTCAAAGCTATAATCGTTAGCCAGGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAAATAATAGCCTAAGTCAAAGCTATAATCGTTAGCCAGGATAA  245

seq1  ACTCTAACCATTCCTCTTCTGGTGGATACACTATAGGCTGGGAGCTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAACCATTCCTCTTCTGGTGGATACACTATAGGCTGGGAGCTGTAA  295

seq1  TGGGAGCCATGCATACAACCAGCTCCTCTTTCTTAGCAGTACACTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCATGCATACAACCAGCTCCTCTTTCTTAGCAGTACACTCACTC  345

seq1  AAAAGGACCTTTCAAGAAGTCAGTGGGACTGAACACACTACTCCCTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACCTTTCAAGAAGTCAGTGGGACTGAACACACTACTCCCTTAGC  395

seq1  CCAAACCATAGACTTCTTTTATAGAACAAAGGTGGGGGTTGTAGTTAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCATAGACTTCTTTTATAGAACAAAGGTGGGGGTTGTAGTTAGGG  445

seq1  AAGGCTAAAATAAAACCTGCTCTTCATTGAAGGAGGGGCACGGAGACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAAAATAAAACCTGCTCTTCATTGAAGGAGGGGCACGGAGACTAC  495

seq1  TGAAATCTTTCTATTCGAGAGAAGAGGTAAGAGGTATGAAAGTATAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTTTCTATTCGAGAGAAGAGGTAAGAGGTATGAAAGTATAGGGC  545

seq1  AGGGTGGCTGCTACAGAATACTCCAGAGAAACCCAGGCACAAGTAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCTGCTACAGAATACTCCAGAGAAACCCAGGCACAAGTAGAGAG  595

seq1  CAGCAAGGAGAAACACTAAAGCAGGCATCAAAAATAAAATCCTTTCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGAGAAACACTAAAGCAGGCATCAAAAATAAAATCCTTTCTAAT  645

seq1  TATCTTTACCTTAATCTTGTGAGACTGAGGGAAAGGGGCTAAAATAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTACCTTAATCTTGTGAGACTGAGGGAAAGGGGCTAAAATAAGAC  695

seq1  ATGCAAAACTAATAAAGATATGTGCAGAAATCAATACAGTTGAGAGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAACTAATAAAGATATGTGCAGAAATCAATACAGTTGAGAGTAAA  745

seq1  AATATTGGATGTGGAGCTGATGTCTATAACTAGAGAGCTAAGGCAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGATGTGGAGCTGATGTCTATAACTAGAGAGCTAAGGCAGGAGG  795

seq1  ACCACTGTGAGTTCAAGACAAAACTGGGCCTTGAATTC  838
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTGAGTTCAAGACAAAACTGGGCCTTGAATTC  833

seq1: chr17_31912466_31913453
seq2: B6Ng01-034E07.g_69_1049

seq1  GAATTCATGGGATGGTGCAGATGAGAAAGCTGGACACAACCTGCTTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGATGGTGCAGATGAGAAAGCTGGACACAACCTGCTTGCTC  50

seq1  AGGACTAGGGGAGCGTTCTGGAGTAATAGGTCTGCCTGAGAGCCTAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGGGAGCGTTCTGGAGTAATAGGTCTGCCTGAGAGCCTAAAAC  100

seq1  TATTAAAGGTGTCGTCTTGGTTACTTTTGTTTTGCTGTGACAAAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGGTGTCGTCTTGGTTACTTTTGTTTTGCTGTGACAAAACACCT  150

seq1  CGAACAAGGCAACTTATCAAAGAAAGGGGTCCGTTGGCTATGGTTCCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAAGGCAACTTATCAAAGAAAGGGGTCCGTTGGCTATGGTTCCAGA  200

seq1  TGGTCACAATCCATGACGCTGGAACGAAGGGACAGCTAAGAGCTCACGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAATCCATGACGCTGGAACGAAGGGACAGCTAAGAGCTCACGTC  250

seq1  TCAATTCACAACCACACAGTGGGAATTGCTTGCTTGACCTCAAAGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCACAACCACACAGTGGGAATTGCTTGCTTGACCTCAAAGCTTGT  300

seq1  CCCCCAGTGACACACCTCCTAACCCTTTCCAAAGTTTTACAAGCTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGACACACCTCCTAACCCTTTCCAAAGTTTTACAAGCTGGGAA  350

seq1  CCAAGTATTTAAATATATGAGCGTATAAGGGAGCCATTCTCATTCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTATTTAAATATATGAGCGTATAAGGGAGCCATTCTCATTCAAAAT  400

seq1  CACCAAAGCTGTATAGCTGAAGAGTTGAGTAGACCTGAAACACTTACCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGCTGTATAGCTGAAGAGTTGAGTAGACCTGAAACACTTACCCT  450

seq1  CCTTTGCAGTGTAGAAACATTATATCCATTCTCCAACCCCAAGAAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGTGTAGAAACATTATATCCATTCTCCAACCCCAAGAAAGGAC  500

seq1  CACAACCTGGGGTGTGTAATGCTGGCTGGCTGCACCAGAAGTTAGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCTGGGGTGTGTAATGCTGGCTGGCTGCACCAGAAGTTAGGGTGT  550

seq1  GGCGCGGCAGAGCAGCATACCCCTGCAATAGTGGGACTCTCTGATTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCGGCAGAGCAGCATACCCCTGCAATAGTGGGACTCTCTGATTTCCC  600

seq1  ACTATTGGTTGAAGGTGGGAAGGAGGTGGCTTATCCATACTGTGACGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGTTGAAGGTGGGAAGGAGGTGGCTTATCCATACTGTGACGGAC  650

seq1  TGCCCTTGTGCTAGAGAGCTGGCTGAGTTTCCCCATTCCTCAAACCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGTGCTAGAGAGCTGGCTGAGTTTCCCCATTCCTCAAACCTGTT  700

seq1  TGAGCTCCACCCTGTCTCTCCAGGTGTCTGAGCTCCACAGTGAAAGAGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCACCCTGTCTCTCCAGGTGTCTGAGCTCCACAGTGAAAGAGTC  750

seq1  ACAGCAGAGAGCCCCATGACTGCAAGTGTCCCCCAAGTTTGCTGTTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAGAGCCCCATGACTGCAAGTGTCCCCCAAGTTTGCTGTTTCCT  800

seq1  GGGGTGGCTTCATTTTCAGCAGATGTGACCCAGGAACCCTAGTACAGGGC  850
      ||||||||||| ||||| |||||| |||||||||||||||||||||||||
seq2  GGGGTGGCTTC-TTTTCCGCAGATTTGACCCAGGAACCCTAGTACAGGGC  849

seq1  CCTCCTTGAACTTGGGGGATCCTGGTGATTCTACTAACCGTCCAAGAAAA  900
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CCTCCTTGAACTTGGGGGATCCTGGTGA-TCTACT-ACCGTCCAAGAAAA  897

seq1  TCCTGGACAACATGAGGTGTTCCGACTTGGGATACA-TGCCCAACTCCTT  949
      |||||||| || ||| | ||||||||| |||| ||| || | | ||||||
seq2  TCCTGGAC-ACCTGAAGAGTTCCGACTGGGGA-ACATTGACAACCTCCTT  945

seq1  GTAAATTGCTTTGGCTAGTGAAACAGCCTGGGTGCTAGT  988
      ||||||||| ||||| ||||||||| ||| |||||||||
seq2  GTAAATTGC-TTGGC-AGTGAAACACCCT-GGTGCTAGT  981