BAC Information

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BAC

Clone NameB6Ng01-034M03
Chromosome17 (Build37)
Map Location 42,433,633 - 42,434,668
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627577
Downstream geneLOC627626, Opn5, Gpr115, Gpr111, EG546797, Cd2ap, Tnfrsf21, LOC100043770, Gpr110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M03.bB6Ng01-034M03.g
ACCDH863417DH863418
length5161,029
definitionDH863417|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M03, 5' end.DH863418|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattgttttaaatagctgagtagtattccattgtgtaaatgtaca
aaatttctgtatccattcctctgttgatggacatctgggttctttctacc
ttctggctattataaataaggatgctaggaatatagtggagcatgtgtcc
ctattaccagttggaacagcttctgggtatatgcccaggagaggtattgc
tggatcttccagtagcactatatgcaattttctaaggaaccaccaaactg
atttccagagtgttgtaccaccttgcaatcccaccagcagtcgaggagta
tccctctttctccacatcctcaccagcatctgctgtcgcctgaatttttg
atcttagcaattctgactggtgtgaggtggaatttcagagtagttttgat
ttgcatttccttgatgattaaggatgttgaacattttttttcagatgctt
ctcagccattatgtattccctcattttgagaaatctttgtttagctatat
accccatttttaataa

gaattccatgatcgaaagcccatctttaggacattggaatatgatgtagg
tttaattagaggacaagaggaatgtataattaaccagtcttagtgaaatt
gtggtccaactcattggccagatggaatcctccaaaatggtatatggttc
tcctgcaggctaagtacattgtcaacctattaatgacatcattatcttag
gtagtcatgaattattttttgagattgaatacatgtttggaggtaacatg
cagaagtaagtttgtatattgacatgccaataatttttattacgtaaagg
tagaataaggttggaaccttttatggcttgaataaaaaaaaatgtatcct
atttgttcatatatttgcatacttgatgtccagttggtggctttgtttgg
tgacactatggaaactacaggaggtggagccttgctgggggaagtatgtc
cttggtggctagtttgaggatgtataatctcaagccactttctattatcc
ctctctgcctttttttttttttttttttgtatagatgaaaatcagccagc
ttcctgctcctattgccatgccataccttccccaccacatggactcttcc
tctctggagccataaaccctttctttcttaagttgcttttggtcatgggg
tttattacagtaacagaaaagttcgtaatacaaatgctgtttagttttaa
ggcatggaagaaataaaggcatgagttctttaaaaataatctgataactg
ttcctctaatttaaaataccaaatccagtctcatcatatatacctcttcc
tattattatctgtcagttttcaggataaaataattttggagaagatggaa
gctggccatgaagagactgccagtccctgactcttgcatgatggggagct
caccacaggagctttgcatctattctgaaaaaaagagagagcagcactga
tggtgaaatgcaattattaacatctcattggtaaggggatttccaaaact
tgagtcttataaccatagaagaggtcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_42433633_42434668
seq2: B6Ng01-034M03.g_70_1098 (reverse)

seq1  CAAGACACTCTTCTATGGTTTATAAGGACTCAAGTGTTTGAAAATACCCC  50
      |||||| ||||||||||| |||||| ||||||||| |||| |||| ||||
seq2  CAAGAC-CTCTTCTATGG-TTATAA-GACTCAAGT-TTTGGAAAT-CCCC  45

seq1  TAACCTATGAGATGGTTAATTAATTGCATTTCAACATCAGTGCTGCTCTC  100
      | ||| ||||||| ||||| ||||||||||||| ||||||||||||||||
seq2  TTACCAATGAGAT-GTTAA-TAATTGCATTTCACCATCAGTGCTGCTCTC  93

seq1  TCTTTTTCTTCAGAATAGATGCAAAGCTCCTGTGGTGAGCTCCCCATCAT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTT-TTCAGAATAGATGCAAAGCTCCTGTGGTGAGCTCCCCATCAT  142

seq1  GC-AGAGTCAGGGACTGGCAGTCTCTTCATGGCCAGCTTCCATCTTCTCC  199
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGTCAGGGACTGGCAGTCTCTTCATGGCCAGCTTCCATCTTCTCC  192

seq1  AAAATTATTTTATCCTGAAAACTGACAGATAATAATAGGAAGAGGTATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTATCCTGAAAACTGACAGATAATAATAGGAAGAGGTATAT  242

seq1  ATGATGAGACTGGATTTGGTATTTTAAATTAGAGGAACAGTTATCAGATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGACTGGATTTGGTATTTTAAATTAGAGGAACAGTTATCAGATT  292

seq1  ATTTTTAAAGAACTCATGCCTTTATTTCTTCCATGCCTTAAAACTAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGAACTCATGCCTTTATTTCTTCCATGCCTTAAAACTAAACA  342

seq1  GCATTTGTATTACGAACTTTTCTGTTACTGTAATAAACCCCATGACCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTATTACGAACTTTTCTGTTACTGTAATAAACCCCATGACCAAA  392

seq1  AGCAACTTAAGAAAGAAAGGGTTTATGGCTCCAGAGAGGAAGAGTCCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTTAAGAAAGAAAGGGTTTATGGCTCCAGAGAGGAAGAGTCCATG  442

seq1  TGGTGGGGAAGGTATGGCATGGCAATAGGAGCAGGAAGCTGGCTGATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGAAGGTATGGCATGGCAATAGGAGCAGGAAGCTGGCTGATTTT  492

seq1  CATCTATACAAAAAAAAAAAAAAAAAAAGGCAGAGAGGGATAATAGAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATACAAAAAAAAAAAAAAAAAAAGGCAGAGAGGGATAATAGAAAG  542

seq1  TGGCTTGAGATTATACATCCTCAAACTAGCCACCAAGGACATACTTCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAGATTATACATCCTCAAACTAGCCACCAAGGACATACTTCCCC  592

seq1  CAGCAAGGCTCCACCTCCTGTAGTTTCCATAGTGTCACCAAACAAAGCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCTCCACCTCCTGTAGTTTCCATAGTGTCACCAAACAAAGCCA  642

seq1  CCAACTGGACATCAAGTATGCAAATATATGAACAAATAGGATACATTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGGACATCAAGTATGCAAATATATGAACAAATAGGATACATTTTT  692

seq1  TTTTATTCAAGCCATAAAAGGTTCCAACCTTATTCTACCTTTACGTAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAAGCCATAAAAGGTTCCAACCTTATTCTACCTTTACGTAATA  742

seq1  AAAATTATTGGCATGTCAATATACAAACTTACTTCTGCATGTTACCTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTGGCATGTCAATATACAAACTTACTTCTGCATGTTACCTCCA  792

seq1  AACATGTATTCAATCTCAAAAAATAATTCATGACTACCTAAGATAATGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATTCAATCTCAAAAAATAATTCATGACTACCTAAGATAATGAT  842

seq1  GTCATTAATAGGTTGACAATGTACTTAGCCTGCAGGAGAACCATATACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAATAGGTTGACAATGTACTTAGCCTGCAGGAGAACCATATACCA  892

seq1  TTTTGGAGGATTCCATCTGGCCAATGAGTTGGACCACAATTTCACTAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGATTCCATCTGGCCAATGAGTTGGACCACAATTTCACTAAGA  942

seq1  CTGGTTAATTATACATTCCTCTTGTCCTCTAATTAAACCTACATCATATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAATTATACATTCCTCTTGTCCTCTAATTAAACCTACATCATATT  992

seq1  CCAATGTCCTAAAGATGGGCTTTCGATCATGGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCCTAAAGATGGGCTTTCGATCATGGAATTC  1029


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