BAC Information

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BAC

Clone NameB6Ng01-035A04
Chromosome17 (Build37)
Map Location 45,205,412 - 45,206,427
singlet/doubletsinglet
Overlap geneSupt3h
Upstream geneEnpp5, Enpp4, Clic5, Runx2, 4930564C03Rik
Downstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035A04.bB6Ng01-035A04.g
ACCDH863597DH863598
length905996
definitionDH863597|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A04, 5' end.DH863598|Mus musculus domesticus DNA, BAC clone: B6Ng01-035A04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctctccaagacttttttcatgaatgggtgttggattttg
tcaaatgctttctccgcatctaatgagatgatcatgtaatttttgtcttt
gagtttgtttatatagtggattaagttgatggattcctgtatattaaacc
atccctgcatccctggaatgaaacctacttgatcatgtgggatgatcgtt
ttgatgtgttcttggatttggattgcaagtattttattgagtatttttgc
attgatattcataagggaattttggtctgaagttctctttctttgttggg
tctttatgtgatttaagtatcagagtaattgtggcttcatagaatgaatg
gggtagagtaccttctgtttctattttgtggaatagtttgaggagaattg
gaattaggtcttctttgaaggtctgatagaactttgcattaaacccatct
ggtcctgggctctttttggttgggagacgtttattgactgcttctaattc
tttaggggaaatgggactttttagatagtttacctgatcctgatttaact
ttggtacctggtatctgtctaggaaattgtccaattcatccatgtttttc
cagttttattgagtatagtcttttgtgataggatctgatgatgttttgga
tttcctcaggttctgttgttatgtctccttttcatttctgattttgttag
ttagatactgtctctgtgccctctacttagtctggctaagggttcatcta
tcttgttgaatttctcaagaaccagttctggtttgtttgattcttgatag
ttttttttttttccccaactggtgatttcaccctaagttgatatttctgc
agctactctttgggtgattgcttctttgtctaagctgagtatgctgtcag
tgcta
gaattctggaaacagcctggtgatggctgcacatggtgatggaaaaaaat
gctacagagctgtgcaactggaggaggctcagtggtaagctttatgtgct
gtcctctccacaataaagaaagagttcacacaggaaaagaaaaggatggc
cagacttagggcaaaacaagcaaggtgaaccgtggctgtgaacaggtatg
agtgtccactataaacatctatcacatttttatgtgtctatgagtggaaa
tatgcacgtgtgagggggagctgcctgcaaagttcaaaagatggtgtcag
ggtgtcagatacctggagctagagttccaggtggttgtaaaatgcccact
gtgggtgctgggaactgaactcaggtccatcgcaagagcagtatatgcct
gtaaccactgagccattgcttgtctattatctcttcttatatgtgacaaa
atatctttaataaattgctgttgaagtatgataagaatgctatttctagt
tcttatttaaaaaatcagtttgttgatactgtatttattgctttgggttt
tagttactacttctgtctaaactcccaaaaggaggatgctgggaggaaga
gagagttctggagttaagcccctaaggtaccaaggtgacccctatgtaac
catattttgacattagagctaaagggtcctaacctgataaggcatgggtg
gcccaaaacgaggaagcctccatacacacacagagacgacaggtcactgc
agacacaagggaagaacggttgggtcaactgcagttcactgactagcatc
ctgaccatgggactctcagcttgtaacatgtgagaactgaaggtgagtca
taccacgcatggccatagtattcttagggtgagcgcacatataacagtgt
ggactacacatctaaggtatgtagctaggctgggacatactgaatcagct
ctgatagagcgctgctcaacccaagctcagcatcagctgtcaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45205412_45206427
seq2: B6Ng01-035A04.g_68_1063 (reverse)

seq1  AACTTGACAGCTTGATTGCTGAGCTTTGTGGTGTGAGCAGGCGGCTCCTC  50
      ||||||||||| ||| |||||||||   |||  |||||| |||    |||
seq2  AACTTGACAGC-TGA-TGCTGAGCT---TGGGTTGAGCA-GCG----CTC  40

seq1  TTTCAGAGCTGATTTCAGTATTGTCCCAGCCTAGCTACATACCCCTAGAT  100
      | |||||||||| ||||||| |||||||||||||||||||| || |||||
seq2  TATCAGAGCTGA-TTCAGTA-TGTCCCAGCCTAGCTACATA-CCTTAGAT  87

seq1  GTGTAGGTCACACACTGTATTAATTGTGCGCTCACCCTAAGAAATACTAT  150
      ||||| ||| |||||||  |||  ||||||||||||||||| ||||||||
seq2  GTGTA-GTC-CACACTG--TTATATGTGCGCTCACCCTAAG-AATACTAT  132

seq1  GGCCATGCGTGGTATGACTTCACCTTCAGTTCTCACAATGTTACAGGCTG  200
      |||||||||||||||||| ||||||||||||||||| |||||||| ||||
seq2  GGCCATGCGTGGTATGAC-TCACCTTCAGTTCTCAC-ATGTTACAAGCTG  180

seq1  AGAAGTCCATGGTCAAGATGCTAAGTCAGTGAACTGCAGTTGACCCAACC  250
      |||   ||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGAGTCCCATGGTCAGGATGCT-AGTCAGTGAACTGCAGTTGACCCAACC  229

seq1  GTTTCTCCC-TGTGTCTGCAGTGACCTGTCGTCTCTGTGTGTGTATGGAA  299
      |||  |||| |||||||||||||||||||||||||||||||||||||| |
seq2  GTTCTTCCCTTGTGTCTGCAGTGACCTGTCGTCTCTGTGTGTGTATGG-A  278

seq1  GGCTTCCTCGTTTTAGGCCA-CCATGCC-TATCAGGTTAGGACCCTTAAG  347
      |||||||||||||| ||||| ||||||| |||||||||||||||||| ||
seq2  GGCTTCCTCGTTTTGGGCCACCCATGCCTTATCAGGTTAGGACCCTTTAG  328

seq1  CTCT-ATGTCCAAATATGGTTACATTAGGGGTCACCTTGGTTACCTTAGG  396
      |||| ||||| ||||||||||||| ||||||||||||||| |||||||||
seq2  CTCTAATGTCAAAATATGGTTACA-TAGGGGTCACCTTGG-TACCTTAGG  376

seq1  TGCTTAACTCCAGAACTCTCTCTTCCTCCCAGCATCCTCCTTTTGGGAGT  446
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAACTCCAGAACTCTCTCTTCCTCCCAGCATCCTCCTTTTGGGAGT  426

seq1  TTAGACAGAAGTAGTAACTAAAACCCAAAGCAATAAATACAGTATCAACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGAAGTAGTAACTAAAACCCAAAGCAATAAATACAGTATCAACA  476

seq1  AACTGATTTTTTAAATAAGAACTAGAAATAGCATTCTTATCATACTTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTTTTAAATAAGAACTAGAAATAGCATTCTTATCATACTTCAA  526

seq1  CAGCAATTTATTAAAGATATTTTGTCACATATAAGAAGAGATAATAGACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTTATTAAAGATATTTTGTCACATATAAGAAGAGATAATAGACA  576

seq1  AGCAATGGCTCAGTGGTTACAGGCATATACTGCTCTTGCGATGGACCTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGCTCAGTGGTTACAGGCATATACTGCTCTTGCGATGGACCTGA  626

seq1  GTTCAGTTCCCAGCACCCACAGTGGGCATTTTACAACCACCTGGAACTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCCCAGCACCCACAGTGGGCATTTTACAACCACCTGGAACTCT  676

seq1  AGCTCCAGGTATCTGACACCCTGACACCATCTTTTGAACTTTGCAGGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGGTATCTGACACCCTGACACCATCTTTTGAACTTTGCAGGCAG  726

seq1  CTCCCCCTCACACGTGCATATTTCCACTCATAGACACATAAAAATGTGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCACACGTGCATATTTCCACTCATAGACACATAAAAATGTGAT  776

seq1  AGATGTTTATAGTGGACACTCATACCTGTTCACAGCCACGGTTCACCTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTATAGTGGACACTCATACCTGTTCACAGCCACGGTTCACCTTG  826

seq1  CTTGTTTTGCCCTAAGTCTGGCCATCCTTTTCTTTTCCTGTGTGAACTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGCCCTAAGTCTGGCCATCCTTTTCTTTTCCTGTGTGAACTCT  876

seq1  TTCTTTATTGTGGAGAGGACAGCACATAAAGCTTACCACTGAGCCTCCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGTGGAGAGGACAGCACATAAAGCTTACCACTGAGCCTCCTC  926

seq1  CAGTTGCACAGCTCTGTAGCATTTTTTTCCATCACCATGTGCAGCCATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCACAGCTCTGTAGCATTTTTTTCCATCACCATGTGCAGCCATCA  976

seq1  CCAGGCTGTTTCCAGAATTC  1016
      ||||||||||||||||||||
seq2  CCAGGCTGTTTCCAGAATTC  996