BAC Information

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BAC

Clone NameB6Ng01-035J06
Chromosome17 (Build37)
Map Location 59,130,280 - 59,245,597
singlet/doubletdoublet
Overlap gene2610034M16Rik, Nudt12, 4930505H01Rik
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035J06.bB6Ng01-035J06.g
ACCDH864005DH864006
length8241,024
definitionDH864005|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J06, 5' end.DH864006|Mus musculus domesticus DNA, BAC clone: B6Ng01-035J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,130,280 - 59,131,108)(59,244,555 - 59,245,597)
sequence
gaattcaaaacaaggtctacagcttagaaatgaaactgacccttcctaca
ttcagagtgaatttcaattatgctgagaagcctggcttgtcaactgcatt
ttacttgctttccaaatgcacattttgtttggaataaccaaattaggata
tggataatgccccttcaaacgaagaatatgtgatgtctttcttagcataa
ataacaacagcttaaatacattgtataggctacttttctggatgtcttca
tcttatttgttaacagagttaagttacaaacaactgttggatagcttcat
acataacatccaagccatttttcttggctattttcttttgtcacacaagc
atttcagaccagcaaatattaaaatagacaccattccaattctgaaatat
acacatacatacaatcatacatacatataatcagcttacctgggtaaagc
cttcgcgaattgctcagctctgaaagaaacattgataaaatgcaaatgcg
tagtttgaaaggcaagaagataaagtaggatttgggtgactcgtcttgtt
ctattttggttttatctgggttttctaggtcccaaatctgattagcatat
ttaatcttatgcaatgtcaggaatggtttactgtcccttaatcagtctat
tattagccgtcttaattggtcctaataacttatttttaaacacaccatta
gtatataatgatgcattgtgggatttttatggtttagaattttgatgggg
gggaggtgtatgagaaacttggcggggttttcacagggtaaaaagagaaa
ctgtgccaaatgaaatgttaatga
gaattcacatgaaagagatgaggccaacatacttgtggtttttatacctc
acggatgtatttgaatgttgagtatcaacaatgatggactcaaaccatga
gatctgaatatgtggttcactgcattcaaacagtggatcaatgccatcct
atttgtacttcacacggtaccacatacataacacccctttactaggcaca
aacacatttagaaaatgtgtaagaattcatacagatgacagagtttcagt
acaagtgcagttccatacaagttctaaggagaaaaacatcagatgtggcc
aatgagaggcatatttcctaaatattttgtaagaaatctgctacactctc
tacaaaccagtggcttcatcactaagccccttagttaagcaatgccagag
gtcctgttattatcagttacaaactagcagtgtgctatgtgtctcctgct
tcaaaatgtcatgataatttttcctatataaaagtgtgcttctcttacag
tttcaactgtttttattactctaaaaaagccattttggaacttttaaatt
taaaaagcatatttagcaaagcgaccatagtgattatttgatctctagag
aataatgttcatgtttaatgacctattagggttttttaaagagattatta
aattttaaaacaactctctagctggaatatgcaagttgacagctaacaca
gacacaatgcagggtattggtgacataataaaagcattatatcatgtgca
atatatcttaatgttattttctataactatggccagaaaagagatcaaaa
ggaattttggttttggttttggttttggttttcaatcatcaccaatcagg
caatgagtatttatttatttcaactattctctcaaacaatatgaaaagaa
gtgttaaacttctaaaaaaaaaaaaaatcaaggcaggggattacctgagg
agaaggaggagcggcaaaggaaagaaatgagcagaataatgtactacttt
ttaaaaaacaaaaaaatcatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59130280_59131108
seq2: B6Ng01-035J06.b_43_866

seq1  GAATTCAAAACAAGGTCTACAGCTTAGAAATGAAACTGACCCTTCCTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAGGTCTACAGCTTAGAAATGAAACTGACCCTTCCTACA  50

seq1  TTCAGAGTGAATTTCAATTATGCTGAGAAGCCTGGCTTGTCAACTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTGAATTTCAATTATGCTGAGAAGCCTGGCTTGTCAACTGCATT  100

seq1  TTACTTGCTTTCCAAATGCACATTTTGTTTGGAATAACCAAATTAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCTTTCCAAATGCACATTTTGTTTGGAATAACCAAATTAGGATA  150

seq1  TGGATAATGCCCCTTCAAACGAAGAATATGTGATGTCTTTCTTAGCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATGCCCCTTCAAACGAAGAATATGTGATGTCTTTCTTAGCATAA  200

seq1  ATAACAACAGCTTAAATACATTGTATAGGCTACTTTTCTGGATGTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACAGCTTAAATACATTGTATAGGCTACTTTTCTGGATGTCTTCA  250

seq1  TCTTATTTGTTAACAGAGTTAAGTTACAAACAACTGTTGGATAGCTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTGTTAACAGAGTTAAGTTACAAACAACTGTTGGATAGCTTCAT  300

seq1  ACATAACATCCAAGCCATTTTTCTTGGCTATTTTCTTTTGTCACACAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACATCCAAGCCATTTTTCTTGGCTATTTTCTTTTGTCACACAAGC  350

seq1  ATTTCAGACCAGCAAATATTAAAATAGACACCATTCCAATTCTGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGACCAGCAAATATTAAAATAGACACCATTCCAATTCTGAAATAT  400

seq1  ACACATACATACAATCATACATACATATAATCAGCTTACCTGGGTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATACAATCATACATACATATAATCAGCTTACCTGGGTAAAGC  450

seq1  CTTCGCGAATTGCTCAGCTCTGAAAGAAACATTGATAAAATGCAAATGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCGAATTGCTCAGCTCTGAAAGAAACATTGATAAAATGCAAATGCG  500

seq1  TAGTTTGAAAGGCAAGAAGATAAAGTAGGATTTGGGTGACTCGTCTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGAAAGGCAAGAAGATAAAGTAGGATTTGGGTGACTCGTCTTGTT  550

seq1  CTATTTTGGTTTTATCTGGGTTTTCTAGGTCCCAAATCTGATTAGCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGGTTTTATCTGGGTTTTCTAGGTCCCAAATCTGATTAGCATAT  600

seq1  TTAATCTTATGCAATGTCAGGAATGGTTTACTGTCCCTTAATCAGTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTTATGCAATGTCAGGAATGGTTTACTGTCCCTTAATCAGTCTAT  650

seq1  TATTAGCCGTCTTAATTGGTCCTAATAACTTATTTTTAAACACACCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCCGTCTTAATTGGTCCTAATAACTTATTTTTAAACACACCATTA  700

seq1  GTATATAATGATGCATTGTGGGATTTTTATGGTTTAGAATTTTGAT-GGG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTATATAATGATGCATTGTGGGATTTTTATGGTTTAGAATTTTGATGGGG  750

seq1  GGGAGGTGTATGAGAAACATTGGCGTGGTATTCACAGGGTAAAAAAGAAG  799
      |||||||||||||||||| |||||| ||| |||||||||||||||   ||
seq2  GGGAGGTGTATGAGAAAC-TTGGCGGGGTTTTCACAGGGTAAAAA--GAG  797

seq1  AAACCTGTGCCAAAATGAAAATGTTAATGA  829
      ||| ||||||| ||||| ||||||||||||
seq2  AAA-CTGTGCC-AAATG-AAATGTTAATGA  824

seq1: chr17_59244555_59245597
seq2: B6Ng01-035J06.g_67_1090 (reverse)

seq1  TAAAATGATTCTTTTTGGTATTTTTTAAAAAATGTTAGTACAATTTATTC  50
      |||||||||| ||||||   |||||||||||    |||||||  ||||||
seq2  TAAAATGATT-TTTTTG---TTTTTTAAAAA---GTAGTACA--TTATTC  41

seq1  TGCCTCCATATCTTTCCCTTTGGCCGCTCCTCCTTTCTCCTCAGGTAAAT  100
      |||   ||| |||||||  || ||||||||||| ||||||||||||||  
seq2  TGC--TCATTTCTTTCC--TTTGCCGCTCCTCC-TTCTCCTCAGGTAA--  84

seq1  CCCCCTGCCCTGATTTTTTTTTTTTTTTAGGAAGTTTAACACTTCTTTTC  150
       |||||||| |||||||||||||||||   ||||||||||||||||||||
seq2  TCCCCTGCCTTGATTTTTTTTTTTTTT--AGAAGTTTAACACTTCTTTTC  132

seq1  ATTATTGTTTGAGAGAATAGTTGAAATAAATAAATACTCATGGCCTGATT  200
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  A-TATTGTTTGAGAGAATAGTTGAAATAAATAAATACTCATTGCCTGATT  181

seq1  GGTGATGATTGAAAACCAAAACCAAAACCAAAACCAAAATTCCCTTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGTGATGATTGAAAACCAAAACCAAAACCAAAACCAAAATTCCTTTTGAT  231

seq1  CTCTTTTCTGGCCATAGTTATAGAAAATAACATTAAGATATATTGCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGGCCATAGTTATAGAAAATAACATTAAGATATATTGCACAT  281

seq1  GATATAATGCTTTTATTATGTCACCAATACCCTGCATTGTGTCTGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATGCTTTTATTATGTCACCAATACCCTGCATTGTGTCTGTGTTA  331

seq1  GCTGTCAACTTGCATATTCCAGCTAGAGAGTTGTTTTAAAATTTAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAACTTGCATATTCCAGCTAGAGAGTTGTTTTAAAATTTAATAAT  381

seq1  CTCTTTAAAAAACCCTAATAGGTCATTAAACATGAACATTATTCTCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAAACCCTAATAGGTCATTAAACATGAACATTATTCTCTAGA  431

seq1  GATCAAATAATCACTATGGTCGCTTTGCTAAATATGCTTTTTAAATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATAATCACTATGGTCGCTTTGCTAAATATGCTTTTTAAATTTAA  481

seq1  AAGTTCCAAAATGGCTTTTTTAGAGTAATAAAAACAGTTGAAACTGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAAAATGGCTTTTTTAGAGTAATAAAAACAGTTGAAACTGTAAG  531

seq1  AGAAGCACACTTTTATATAGGAAAAATTATCATGACATTTTGAAGCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCACACTTTTATATAGGAAAAATTATCATGACATTTTGAAGCAGGA  581

seq1  GACACATAGCACACTGCTAGTTTGTAACTGATAATAACAGGACCTCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAGCACACTGCTAGTTTGTAACTGATAATAACAGGACCTCTGGC  631

seq1  ATTGCTTAACTAAGGGGCTTAGTGATGAAGCCACTGGTTTGTAGAGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAACTAAGGGGCTTAGTGATGAAGCCACTGGTTTGTAGAGAGTG  681

seq1  TAGCAGATTTCTTACAAAATATTTAGGAAATATGCCTCTCATTGGCCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATTTCTTACAAAATATTTAGGAAATATGCCTCTCATTGGCCACA  731

seq1  TCTGATGTTTTTCTCCTTAGAACTTGTATGGAACTGCACTTGTACTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTTTTCTCCTTAGAACTTGTATGGAACTGCACTTGTACTGAAA  781

seq1  CTCTGTCATCTGTATGAATTCTTACACATTTTCTAAATGTGTTTGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATCTGTATGAATTCTTACACATTTTCTAAATGTGTTTGTGCCT  831

seq1  AGTAAAGGGGTGTTATGTATGTGGTACCGTGTGAAGTACAAATAGGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGGGTGTTATGTATGTGGTACCGTGTGAAGTACAAATAGGATGG  881

seq1  CATTGATCCACTGTTTGAATGCAGTGAACCACATATTCAGATCTCATGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCCACTGTTTGAATGCAGTGAACCACATATTCAGATCTCATGGT  931

seq1  TTGAGTCCATCATTGTTGATACTCAACATTCAAATACATCCGTGAGGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCATCATTGTTGATACTCAACATTCAAATACATCCGTGAGGTAT  981

seq1  AAAAACCACAAGTATGTTGGCCTCATCTCTTTCATGTGAATTC  1043
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACAAGTATGTTGGCCTCATCTCTTTCATGTGAATTC  1024