BAC Information

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BAC

Clone NameB6Ng01-036C13
Chromosome17 (Build37)
Map Location 49,637,508 - 49,767,532
singlet/doubletdoublet
Overlap geneDaam2, Kif6
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1
Downstream geneEG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036C13.bB6Ng01-036C13.g
ACCDH864425DH864426
length1,084857
definitionDH864425|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C13, 5' end.DH864426|Mus musculus domesticus DNA, BAC clone: B6Ng01-036C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,637,508 - 49,638,601)(49,766,676 - 49,767,532)
sequence
gaattcactatgtaaatgaggatgaccttgaactccagacctcctgcctc
cacttcccaaatgcaccacacctctggctcatcatttctttcagactaag
tcttcaaaagccccactctctctgttctgattgggcagccagcagctcag
ctcaccccaggaggccagctgctgccatcagacagttcacaccacagtgc
tttaaaacaatgctcattggcttgtctaagagaggaatgctatcgagagt
tctcaacatctcttttcatcatctgacacttcctaatggcagccaggttg
gtccagaaccaaaggaaactggagacagatcctttgttctgggatccgtt
tcatgtctgtttcctctacaagaaaggtgctttggaaagcccacctcacc
cctaaagagagccttgtggagtggagaacatagcacgcaggctcctaccc
tctgcccgtctctgcttgactgtccacccatttttcccaccatcgacgcc
ctcccaaccctttgcccactgaccaccagctctgcaaagcggacattgag
ctcctcaggattcgggatgggaccggagaactccagatactgcagtgggt
ggctgtcccggaggtcgatctcgggaaggtcactgcctccaaagcagcaa
aggaagcccaggccatgaggactcctcttgcggagggccatggtcactgc
aggctgggatggttggcgggcaggcaccttagtcctcattggcacaatct
aggtagtgggacagagaaaatgggtgattgtgagaaagagccagacaggt
aaagacagtggccactctggcttcagaactcttatcacagagggtgttga
gggcattagctcaacatgaaaggcctgtcctgcgtctcacacacaccctc
ttgcctcttcagctcctttccccttgagttatcaactgtcttcatcagac
ttgccgtgcttcctgacacaaacggacatctcccattgcctttctttgtc
cctgaagaagtgaagaacatagagtccaatatgtgactttaagtggtcaa
gtctgaaagtcgtatctatgatctccatcctgtg
gaattcctgcctcagccttttaagagctaggattatagtctgggcctgac
ccatcactaggataatagtcactgaacattgcccatttatctcagaggct
ggcagatctctgtgagtttgagaccagccaggtctacatggtgatttcca
ggcctaccagggctatgtagtgagactctgtctcgaaatgaatgaatgaa
tgaatgaatgaatgaatgaatgagtgaattgacttgattattccactgaa
tgaatgatgaatagtttgaataatatgttctagttcttttcttctgagag
tatttatacagaatgaagatattttaggggcaaatgaaagaaatacctgt
catttgagctcatggaactatgactgaaagtgagtgagctatgggaccat
cagagactgtggacatgcctcacagggagaaaaaaatccaggaactggga
agtgaaagggaagttttgctttcattagcccctccccctgagcacacatg
cagccccagtcagacccacatctcagcttgccctgtctcaaagtccaggg
ggagggatctgagtcatgtggttgagctatgctgagagggagacgggatg
aggttgggaagaaataacctctcagtgacaagtggcacccaggagttttg
gcaggggtgactgacgctaaactgtgatgaaagcatcccatgaccctctc
agcatcacgaggtccactcagagggaggggaagatctgctcccacctcac
ggctacagcttctctactgcatgtcgagcgaatgtccgtcaaaggcccag
tgtccttgccctctcactgaagcaagaagttgtcatatctgaaactccac
aaattcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_49637508_49638601
seq2: B6Ng01-036C13.b_48_1131

seq1  GAATTCACTATGTAAATGAGGATGACCTTGAACTCCAGACCTCCTGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAAATGAGGATGACCTTGAACTCCAGACCTCCTGCCTC  50

seq1  CACTTCCCAAATGCACCACACCTCTGGCTCATCATTTCTTTCAGACTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCAAATGCACCACACCTCTGGCTCATCATTTCTTTCAGACTAAG  100

seq1  TCTTCAAAAGCCCCACTCTCTCTGTTCTGATTGGGCAGCCAGCAGCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAAAGCCCCACTCTCTCTGTTCTGATTGGGCAGCCAGCAGCTCAG  150

seq1  CTCACCCCAGGAGGCCAGCTGCTGCCATCAGACAGTTCACACCACAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCAGGAGGCCAGCTGCTGCCATCAGACAGTTCACACCACAGTGC  200

seq1  TTTAAAACAATGCTCATTGGCTTGTCTAAGAGAGGAATGCTATCGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACAATGCTCATTGGCTTGTCTAAGAGAGGAATGCTATCGAGAGT  250

seq1  TCTCAACATCTCTTTTCATCATCTGACACTTCCTAATGGCAGCCAGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACATCTCTTTTCATCATCTGACACTTCCTAATGGCAGCCAGGTTG  300

seq1  GTCCAGAACCAAAGGAAACTGGAGACAGATCCTTTGTTCTGGGATCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAACCAAAGGAAACTGGAGACAGATCCTTTGTTCTGGGATCCGTT  350

seq1  TCATGTCTGTTTCCTCTACAAGAAAGGTGCTTTGGAAAGCCCACCTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGTTTCCTCTACAAGAAAGGTGCTTTGGAAAGCCCACCTCACC  400

seq1  CCTAAAGAGAGCCTTGTGGAGTGGAGAACATAGCACGCAGGCTCCTACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAGAGCCTTGTGGAGTGGAGAACATAGCACGCAGGCTCCTACCC  450

seq1  TCTGCCCGTCTCTGCTTGACTGTCCACCCATTTTTCCCACCATCGACGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCGTCTCTGCTTGACTGTCCACCCATTTTTCCCACCATCGACGCC  500

seq1  CTCCCAACCCTTTGCCCACTGACCACCAGCTCTGCAAAGCGGACATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACCCTTTGCCCACTGACCACCAGCTCTGCAAAGCGGACATTGAG  550

seq1  CTCCTCAGGATTCGGGATGGGACCGGAGAACTCCAGATACTGCAGTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGATTCGGGATGGGACCGGAGAACTCCAGATACTGCAGTGGGT  600

seq1  GGCTGTCCCGGAGGTCGATCTCGGGAAGGTCACTGCCTCCAAAGCAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCCGGAGGTCGATCTCGGGAAGGTCACTGCCTCCAAAGCAGCAA  650

seq1  AGGAAGCCCAGGCCATGAGGACTCCTCTTGCGGAGGGCCATGGTCACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCAGGCCATGAGGACTCCTCTTGCGGAGGGCCATGGTCACTGC  700

seq1  AGGCTGGGATGGTTGGCGGGCAGGCACCTTAGGTCCTCATTGGCACAATC  750
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGCTGGGATGGTTGGCGGGCAGGCACCTTA-GTCCTCATTGGCACAATC  749

seq1  TAGGTAGTGGGACAGAGAAAATGGGTGATTGTGAGAAAGAGCCAGACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGTGGGACAGAGAAAATGGGTGATTGTGAGAAAGAGCCAGACAGG  799

seq1  TAAGGACAGTGGCCACTCTGGCTTCAGAACTCTTATCACAGAGGGTGTTG  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGTGGCCACTCTGGCTTCAGAACTCTTATCACAGAGGGTGTTG  849

seq1  AGGGCCATTAGCTCAACATGAAAGGCCTGTCCTGCGTCTCACACACACCC  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGG-CATTAGCTCAACATGAAAGGCCTGTCCTGCGTCTCACACACACCC  898

seq1  TC-TGCCTCTTCAGGCTCCTTTCACCTTGAGTTATTCAACTGTCTTCATC  949
      || |||||||||| ||||||||| |||||||||| |||||||||||||||
seq2  TCTTGCCTCTTCA-GCTCCTTTCCCCTTGAGTTA-TCAACTGTCTTCATC  946

seq1  AGACTTGCCGGTGCTTCCTGACACACACGGACATCTCCCCATTGCCTTTC  999
      ||||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  AGACTTGCC-GTGCTTCCTGACACAAACGGACATCT-CCCATTGCCTTTC  994

seq1  TTTGTCCCTGGAGAAGTGAAGAACATAGAGTCCAAATATGTGACCTTTAG  1049
      |||||||||| |||||||||||||||||||||| ||||||||| ||||| 
seq2  TTTGTCCCTGAAGAAGTGAAGAACATAGAGTCC-AATATGTGA-CTTTAA  1042

seq1  GTGGTCAAGTCTGAAGGTTCTTATCTAATGATCTCCATTCCTGTG  1094
      ||||||||||||||| | || ||||| |||||||||| |||||||
seq2  GTGGTCAAGTCTGAAAG-TCGTATCT-ATGATCTCCA-TCCTGTG  1084

seq1: chr17_49766676_49767532
seq2: B6Ng01-036C13.g_68_924 (reverse)

seq1  CGAATCTTGTGGAGTCTCAGATATGACAAC-TCTTGCTTTCAGTGAGAAG  49
      ||||| ||||||||| |||||||||||||| |||||| |||||||||| |
seq2  CGAAT-TTGTGGAGTTTCAGATATGACAACTTCTTGC-TTCAGTGAGAGG  48

seq1  GC-AGGACACTGGGCCTCTGACGGACATTCGCTCGACCATGCAGTAGAGA  98
      || |||||||||||||| |||||||||||||||||| |||||||||||||
seq2  GCAAGGACACTGGGCCTTTGACGGACATTCGCTCGA-CATGCAGTAGAGA  97

seq1  AGCTGTAGCCGTGAGGTGGGAGCAGATCTTCCCCTCCCTCTGAGTGGACC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGCCGTGAGGTGGGAGCAGATCTTCCCCTCCCTCTGAGTGGACC  147

seq1  TCGTGCTGCTGAGAGGGTCATGGGATGCTTTCATCACAGTTTAGCGTCAG  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATGCTGAGAGGGTCATGGGATGCTTTCATCACAGTTTAGCGTCAG  197

seq1  TCACCCCTGCC-AAACTCCTGGGTGCCACTTGTCACTGAGAGGTTATTTC  247
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCTGCCAAAACTCCTGGGTGCCACTTGTCACTGAGAGGTTATTTC  247

seq1  TTCCCAACCTCATCCCGTCTCCCTCTCAGCATAGCTCAACCACATGACTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAACCTCATCCCGTCTCCCTCTCAGCATAGCTCAACCACATGACTC  297

seq1  AGATCCCTCCCCCTGGACTTTGAGACAGGGCAAGCTGAGATGTGGGTCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTCCCCCTGGACTTTGAGACAGGGCAAGCTGAGATGTGGGTCTG  347

seq1  ACTGGGGCTGCATGTGTGCTCAGGGGGAGGGGCTAATGAAAGCAAAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGCTGCATGTGTGCTCAGGGGGAGGGGCTAATGAAAGCAAAACTT  397

seq1  CCCTTTCACTTCCCAGTTCCTGGATTTTTTTCTCCCTGTGAGGCATGTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCACTTCCCAGTTCCTGGATTTTTTTCTCCCTGTGAGGCATGTCC  447

seq1  ACAGTCTCTGATGGTCCCATAGCTCACTCACTTTCAGTCATAGTTCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCTGATGGTCCCATAGCTCACTCACTTTCAGTCATAGTTCCATG  497

seq1  AGCTCAAATGACAGGTATTTCTTTCATTTGCCCCTAAAATATCTTCATTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAATGACAGGTATTTCTTTCATTTGCCCCTAAAATATCTTCATTC  547

seq1  TGTATAAATACTCTCAGAAGAAAAGAACTAGAACATATTATTCAAACTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATACTCTCAGAAGAAAAGAACTAGAACATATTATTCAAACTAT  597

seq1  TCATCATTCATTCAGTGGAATAATCAAGTCAATTCACTCATTCATTCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATTCATTCAGTGGAATAATCAAGTCAATTCACTCATTCATTCATT  647

seq1  CATTCATTCATTCATTCATTCATTTCGAGACAGAGTCTCACTACATAGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATTCATTCATTCATTTCGAGACAGAGTCTCACTACATAGCC  697

seq1  CTGGTAGGCCTGGAAATCACCATGTAGACCTGGCTGGTCTCAAACTCACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGGCCTGGAAATCACCATGTAGACCTGGCTGGTCTCAAACTCACA  747

seq1  GAGATCTGCCAGCCTCTGAGATAAATGGGCAATGTTCAGTGACTATTATC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGCCAGCCTCTGAGATAAATGGGCAATGTTCAGTGACTATTATC  797

seq1  CTAGTGATGGGTCAGGCCCAGACTATAATCCTAGCTCTTAAAAGGCTGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGATGGGTCAGGCCCAGACTATAATCCTAGCTCTTAAAAGGCTGAG  847

seq1  GCAGGAATTC  857
      ||||||||||
seq2  GCAGGAATTC  857