BAC Information

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BAC

Clone NameB6Ng01-037C21
Chromosome17 (Build37)
Map Location 16,098,240 - 16,218,178
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037C21.bB6Ng01-037C21.g
ACCDH865135DH865136
length1,0851,017
definitionDH865135|Mus musculus domesticus DNA, BAC clone: B6Ng01-037C21, 5' end.DH865136|Mus musculus domesticus DNA, BAC clone: B6Ng01-037C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,217,092 - 16,218,178)(16,098,240 - 16,099,247)
sequence
gaattcaagtcaagtacaaaagtggaggtatgaataaaataacatactga
ctttgttggattgttcagagaatttgagagtcaacacggctaggcactgt
gtgttacagacatgatgaaattaaaaatattcgaaggcctagaatcctgg
agaaataaaatcgggttgctgctgaggccatatgaaacacatgaagacac
tgatcgttgtccacaaatagaaaagagaattgtccatcaccacaatttaa
atgatagtcttctgataatctatggtgctacgtctggacactaagcaaat
gggaccttcaccaagactttgagatcacaagttttaaaaaacctagggag
ttttcagtgaacttcctctactggtgtaaaaagaaagtatgacaacagga
aaatgagggaaggaacttcccctccaaggggcgccagccttacgtatagc
attcctatattgatacaaaaccagtatgtttgactagataggctctctga
ccctgtgaatacaaagcaatcgagatagcgaatgtgcagatctgtacaat
gtgatcatccttgtccacataagcctggtagggaaaaaaaacataaatag
cagcagctataaggctgaaaattaaaatagctaacatttattgaaagtgc
ttcgattgctttctgtgggttattgtatttaatcttcacaacagtccctc
tgagatagagatcactgatatctagcaaagccctgctactgtgtcttgtg
gaaataagcacttttctaagtgcctttgttgacaatctcttccaaggctc
atcctgccctgatttctgagatatgcgcttgcttatctttttcctggcta
taaacagtttgaaaatggatatccaacaacaaataactgtgcttagccct
taagttagagccaataaatatttgctgattggaactggattaatttaaat
tggaagatacatcacaaatgcataaaccataactgcctatgttggatgat
ggtgtcatcaaggtatgcttaaactttacagatggctcctaaacttaagc
aagtttaccttcctatatgctaaattctcccataa
gaattcaacacaaactggactgtcagggcagacatgaaatatagcaggtt
tatgtctggcatctagggcatgcagtatagtgatgtgaatgccaatggac
ttggccagcctcctccctgtggtataatctgtttctctctctctctctca
tacacacacacacacacacacacacacacacacagagagagagagagaga
cagagagagagagagagagagacagagagagacaaagagagagacagaga
taaagacagagagggtgatacacagaaagacagagtgacacagagaggca
gagagagacacacagagaaagacacacacacacacagagagacagagaca
gagagagacagagacagagacagaaagagagaaagagagagacagacaga
gacaaagagagagacagagataaagacagagagggtgatacacagaaaga
cagtgacacagagaggcagagagagacacacagagaaatacacacacact
cacacacacacacagagagagagagagagagagagagagagagagagaga
gagagagaggctggactcctttcaatgacagacaggcacatgacaatgaa
tgtttggttagagatgtcctgtctgaaggacagatcctttatgtgaggga
tgggatctacatgcctgtggtgtgtcagagactctgaatactgtagctga
gacccagaaactgacacactccctggtctgttttcagcttctgtagaaat
caggaccctgagagatgtatttgatttgacaaattggtttttttccccca
tactcttgtcttctttctttctcttcttttcattaaaaatattacagagt
tctttcatttttcagtgatttttatgttgaacaaatttacatttttgctt
tatggaggtattttctgtattttgaagttttttttatatccgaggaacca
agttgtgtccctctggaaccttgaggaatttaaatttaatgtctagaaac
caagtctatttttgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16217092_16218178
seq2: B6Ng01-037C21.b_46_1130 (reverse)

seq1  TTATGGTAGAATATAGCATATA-GAAAGTAAACTGGCTTAAGTTTA-GAG  48
      |||||| ||||| ||||||||| ||| ||||||| ||||||||||| |||
seq2  TTATGGGAGAATTTAGCATATAGGAAGGTAAACTTGCTTAAGTTTAGGAG  50

seq1  CCATCTGGTAAAGTTTAAGCAATACTTTGATGACACCATCATCAAACATA  98
      |||||| ||||||||||||| |||| ||||||||||||||||| ||||||
seq2  CCATCT-GTAAAGTTTAAGC-ATACCTTGATGACACCATCATCCAACATA  98

seq1  GGCAGTTATGGTTTTATGCATTTGTGATGTATCTTCCAATTTAAATTAAT  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTATGG-TTTATGCATTTGTGATGTATCTTCCAATTTAAATTAAT  147

seq1  CCAGTTCCAATCAGCAAATATTTATTGGCTCTAACTTAAGGGCTAAGCAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCCAATCAGCAAATATTTATTGGCTCTAACTTAAGGGCTAAGCAC  197

seq1  AGTTATTTTGTTGTTGGATATCCATTTTCAAACTGTTTATAGCCAGGAAA  248
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTA-TTTGTTGTTGGATATCCATTTTCAAACTGTTTATAGCCAGGAAA  246

seq1  AAGATAAGCAAGCGCATATCTCAGAAATCAGGGCAGGATGAGCCTTGGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGCAAGCGCATATCTCAGAAATCAGGGCAGGATGAGCCTTGGAA  296

seq1  GAGATTGTCAACAAAGGCACTTAGAAAAGTGCTTATTTCCACAAGACACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGTCAACAAAGGCACTTAGAAAAGTGCTTATTTCCACAAGACACA  346

seq1  GTAGCAGGGCTTTGCTAGATATCAGTGATCTCTATCTCAGAGGGACTGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGGCTTTGCTAGATATCAGTGATCTCTATCTCAGAGGGACTGTT  396

seq1  GTGAAGATTAAATACAATAACCCACAGAAAGCAATCGAAGCACTTTCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATTAAATACAATAACCCACAGAAAGCAATCGAAGCACTTTCAAT  446

seq1  AAATGTTAGCTATTTTAATTTTCAGCCTTATAGCTGCTGCTATTTATGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGCTATTTTAATTTTCAGCCTTATAGCTGCTGCTATTTATGTT  496

seq1  TTTTTTCCCTACCAGGCTTATGTGGACAAGGATGATCACATTGTACAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCTACCAGGCTTATGTGGACAAGGATGATCACATTGTACAGAT  546

seq1  CTGCACATTCGCTATCTCGATTGCTTTGTATTCACAGGGTCAGAGAGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACATTCGCTATCTCGATTGCTTTGTATTCACAGGGTCAGAGAGCCT  596

seq1  ATCTAGTCAAACATACTGGTTTTGTATCAATATAGGAATGCTATACGTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCAAACATACTGGTTTTGTATCAATATAGGAATGCTATACGTAA  646

seq1  GGCTGGCGCCCCTTGGAGGGGAAGTTCCTTCCCTCATTTTCCTGTTGTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCGCCCCTTGGAGGGGAAGTTCCTTCCCTCATTTTCCTGTTGTCA  696

seq1  TACTTTCTTTTTACACCAGTAGAGGAAGTTCACTGAAAACTCCCTAGGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTCTTTTTACACCAGTAGAGGAAGTTCACTGAAAACTCCCTAGGTT  746

seq1  TTTTAAAACTTGTGATCTCAAAGTCTTGGTGAAGGTCCCATTTGCTTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAACTTGTGATCTCAAAGTCTTGGTGAAGGTCCCATTTGCTTAGT  796

seq1  GTCCAGACGTAGCACCATAGATTATCAGAAGACTATCATTTAAATTGTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACGTAGCACCATAGATTATCAGAAGACTATCATTTAAATTGTGG  846

seq1  TGATGGACAATTCTCTTTTCTATTTGTGGACAACGATCAGTGTCTTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGACAATTCTCTTTTCTATTTGTGGACAACGATCAGTGTCTTCATG  896

seq1  TGTTTCATATGGCCTCAGCAGCAACCCGATTTTATTTCTCCAGGATTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATATGGCCTCAGCAGCAACCCGATTTTATTTCTCCAGGATTCTA  946

seq1  GGCCTTCGAATATTTTTAATTTCATCATGTCTGTAACACACAGTGCCTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCGAATATTTTTAATTTCATCATGTCTGTAACACACAGTGCCTAG  996

seq1  CCGTGTTGACTCTCAAATTCTCTGAACAATCCAACAAAGTCAGTATGTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTTGACTCTCAAATTCTCTGAACAATCCAACAAAGTCAGTATGTTA  1046

seq1  TTTTATTCATACCTCCACTTTTGTACTTGACTTGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCATACCTCCACTTTTGTACTTGACTTGAATTC  1085

seq1: chr17_16098240_16099247
seq2: B6Ng01-037C21.g_66_1082

seq1  GAATTCAACACAAACTGGACTGTCAGGGCAGACATGAAATATAGCAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACAAACTGGACTGTCAGGGCAGACATGAAATATAGCAGGTT  50

seq1  TATGTCTGGCATCTAGGGCATGCAGTATAGTGATGTGAATGCCAATGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGGCATCTAGGGCATGCAGTATAGTGATGTGAATGCCAATGGAC  100

seq1  TTGGCCAGCCTCCTCCCTGTGGTATAATCTGTTTCTCTCTCTCTCTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGCCTCCTCCCTGTGGTATAATCTGTTTCTCTCTCTCTCTCTCA  150

seq1  TACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGAGA  200

seq1  CAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAAAGAGAGAGACAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGAGAGAGAGAGAGACAGAGAGAGACAAAGAGAGAGACAGAGA  250

seq1  TAAAGACAGAGAGGGTGATACACAGAAAGACAGAGTGACACAGAGAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAGAGGGTGATACACAGAAAGACAGAGTGACACAGAGAGGCA  300

seq1  GAGAGAGACACACAGAGAAAGACACACACACACACAGAGAGACAGAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACACACAGAGAAAGACACACACACACACAGAGAGACAGAGACA  350

seq1  GAGAGAGACAGAGACAGAGACAGAAAGAGAGAAAGAGAGAGACAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGAGACAGAGACAGAAAGAGAGAAAGAGAGAGACAGACAGA  400

seq1  GACAAAGAGAGAGACAGAGATAAAGACAGAGAGGGTGATACACAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAGAGAGACAGAGATAAAGACAGAGAGGGTGATACACAGAAAGA  450

seq1  CAGTGACACAGAGAGGCAGAGAGAGACACACAGAGAAAGACACACACACA  500
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  CAGTGACACAGAGAGGCAGAGAGAGACACACAGAGAAATACACACACACT  500

seq1  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550

seq1  GAGAGAGAGGCTGGACTCC-TTCAATGACAGACAGGCACATGACAATGAA  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGCTGGACTCCTTTCAATGACAGACAGGCACATGACAATGAA  600

seq1  TGTTTGGTTAGAGATGTCCTGTCTGAAGGACAGATCC-TTATGTGAGGAA  648
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  TGTTTGGTTAGAGATGTCCTGTCTGAAGGACAGATCCTTTATGTGAGGGA  650

seq1  TGGGATCTACATGCCTGTGGTGTGTCAGAGACTCTGAATACTGTAGCTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTACATGCCTGTGGTGTGTCAGAGACTCTGAATACTGTAGCTGA  700

seq1  GACCCAGAAACTGACACACTCCCTGGTCTGTATTTCAGCTTCTGTAGAAA  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACCCAGAAACTGACACACTCCCTGGTCTGT-TTTCAGCTTCTGTAGAAA  749

seq1  TCAGGACCCTGAGAGATGTATTTGA-TTGACAAAATTGGTTTTTTCCCCC  797
      ||||||||||||||||||||||||| |||||||| | | |||||||||||
seq2  TCAGGACCCTGAGAGATGTATTTGATTTGACAAATTGGTTTTTTTCCCCC  799

seq1  ATACTCTTGTCTTCTTTC-TTCTCTTCTTTTCATT-AAAATAATACAGAG  845
      |||||||||||||||||| |||||||||||||||| |||||| |||||||
seq2  ATACTCTTGTCTTCTTTCTTTCTCTTCTTTTCATTAAAAATATTACAGAG  849

seq1  TTCTTTCATTTTTCAGTGATTTATATGTTGAACAAATTTACAGTATTGCT  895
      |||||||||||||||||||||| ||||||||||||||||||| | |||||
seq2  TTCTTTCATTTTTCAGTGATTTTTATGTTGAACAAATTTACATTTTTGCT  899

seq1  TTATGGAGGTA-TTTCTGTATTTTGAAGTTATTTTTAATATCTCGA-GAA  943
      ||||||||||| |||||||||||||||||| ||||| ||||| ||| |||
seq2  TTATGGAGGTATTTTCTGTATTTTGAAGTT-TTTTTTATATC-CGAGGAA  947

seq1  CCAGGTTGGTT--CTCTTGAA-CTTGAGGAATTT-AATTTAATGTCTAGA  989
      ||| ||||  |  |||| ||| |||||||||||| |||||||||||||||
seq2  CCAAGTTGTGTCCCTCTGGAACCTTGAGGAATTTAAATTTAATGTCTAGA  997

seq1  AACCAAGTCTA-TTTTGTAC  1008
      ||||||||||| ||||||||
seq2  AACCAAGTCTATTTTTGTAC  1017