BAC Information

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BAC

Clone NameB6Ng01-037D20
Chromosome17 (Build37)
Map Location 56,751,824 - 56,899,469
singlet/doubletdoublet
Overlap geneRpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn
Upstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik
Downstream geneDus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037D20.bB6Ng01-037D20.g
ACCDH865177DH865178
length8011,026
definitionDH865177|Mus musculus domesticus DNA, BAC clone: B6Ng01-037D20, 5' end.DH865178|Mus musculus domesticus DNA, BAC clone: B6Ng01-037D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,898,671 - 56,899,469)(56,751,824 - 56,752,851)
sequence
gaattctggaagaattctgattctctctgtctctgtctgtctctgtctgt
ctgtctgtctgtctctgtctctgtctctctgtgtctctgtgtctgtctct
ctctctgtctctctctgtctctgtctctgtctctctctctgtgtctctct
ctctctctgtcccagttcccagctgaggtgtgactcacagagcacgacag
ggcgtctgtcagttgctgtctgtctcaaggggtggcagaatgtgtgggtg
atctggaaggctattggaatagatgacacttgtatttctggtgtgaccac
gaccagccctgagcaaggcagccactttgtgtatctgaggctgatgagat
tccctgtaagtctttgtagcaaaccatgtgactcaaaaatggggtcatag
gtgggtgcaagttctgtgtccccaccttttgctcctgactcgcctgacgc
tgtcagctctacccttgcacccctatcccagaggaagagcccagtctttc
aagttgctgttgccaggacaaccgttttatgagcgtccacatggtgggca
catgtgtgtgtcctgcactccatgtgtctgtctgccccaccccccgtcac
agctgggccgggtgaacagaggtggccacaggacggctggtgacagcttc
atgggggctggcccagtaggggtgggctctgggctagctctgtgtgcaag
gaggccctggcctcccataccagccccccatgtgtgtcatgtgtgtgcct
gaaggagctgtgggattttcttgcacatatttgtatgctggggggggggg
c
gaattcctcaggctgacagagcgtggagtgtgggaagctgaggcaggaga
ggaggaggctcaagtacagctcagctgctggagcacttgggtgttacacg
cctgtcattatcaggacagcctgggctgcacgagaccatagctcacagaa
aaaaagtgaggaaggagaggagtgagggggcacagcctgtgattctagat
aatttgcagccctctctaccccaaggcctccaggggacgcgaaactcctt
caacgaaacagttcataaggatcagtctattgatccggacagatttgttg
tgactgttgtgacagatctattgatctgttggatccggaaccctccatga
cgaaggcaaacggagttctgtaaactgacttctgacctctgcaagtttgt
agtggcacatgctctctctctttcgagacagggtttctctgtgtagccct
ggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaa
ttcgcctgcctctgcctcccaagtgctggattaaaggtgtgcgccaccac
gcccgacacaaacaaaaaattttaaaagcactctttaaagtcatttttaa
aaagatttgtttatttaattagttattattgtatacagcggtctccctgc
atgtgtaccatcaggcaaaatgagggcaccagatctcattatagatggtt
attagccaccatgtggttaactgagaattgaaatcaggacctctggaaga
gcagacagggctcttaacctctgagacatctctacagagcccattccctc
aaaagcacttttattgtcagagatttaattacttccacagcttacaacag
tgtggaggcagcattccactcctaaccttagggatgattcccaagccgag
gtcttcacgtgtgccgtagaacctccggccaccagatgtcgcccgcagcg
cgcctgtctctctgccggaaaggcctgcaagtggcatatatcccaggatc
tgcgcggtgcctttcttctgtcccgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56898671_56899469
seq2: B6Ng01-037D20.b_48_848 (reverse)

seq1  GCCCACCCCCCCAGCATAC-AATATGTGCAAGAAAATCCCACAGCTCCTT  49
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCCCCCCCCCCAGCATACAAATATGTGCAAGAAAATCCCACAGCTCCTT  50

seq1  CAGGCACACACATGACACACATGGGGGGCTGGTATGGGAGGCCAGGGCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACACATGACACACATGGGGGGCTGGTATGGGAGGCCAGGGCCT  100

seq1  CCTTGCACACAGAGCTAG-CCAGAGCCCACCCCTACTGGGCCAGCCCCCA  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTTGCACACAGAGCTAGCCCAGAGCCCACCCCTACTGGGCCAGCCCCCA  150

seq1  TGAAGCTGTCACCAGCCGTCCTGTGGCCACCTCTGTTCACCCGGCCCAGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGTCACCAGCCGTCCTGTGGCCACCTCTGTTCACCCGGCCCAGC  200

seq1  TGTGACGGGGGGTGGGGCAGACAGACACATGGAGTGCAGGACACACACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACGGGGGGTGGGGCAGACAGACACATGGAGTGCAGGACACACACAT  250

seq1  GTGCCCACCATGTGGACGCTCATAAAACGGTTGTCCTGGCAACAGCAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACCATGTGGACGCTCATAAAACGGTTGTCCTGGCAACAGCAACT  300

seq1  TGAAAGACTGGGCTCTTCCTCTGGGATAGGGGTGCAAGGGTAGAGCTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACTGGGCTCTTCCTCTGGGATAGGGGTGCAAGGGTAGAGCTGAC  350

seq1  AGCGTCAGGCGAGTCAGGAGCAAAAGGTGGGGACACAGAACTTGCACCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGGCGAGTCAGGAGCAAAAGGTGGGGACACAGAACTTGCACCCA  400

seq1  CCTATGACCCCATTTTTGAGTCACATGGTTTGCTACAAAGACTTACAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGACCCCATTTTTGAGTCACATGGTTTGCTACAAAGACTTACAGGG  450

seq1  AATCTCATCAGCCTCAGATACACAAAGTGGCTGCCTTGCTCAGGGCTGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATCAGCCTCAGATACACAAAGTGGCTGCCTTGCTCAGGGCTGGT  500

seq1  CGTGGTCACACCAGAAATACAAGTGTCATCTATTCCAATAGCCTTCCAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTCACACCAGAAATACAAGTGTCATCTATTCCAATAGCCTTCCAGA  550

seq1  TCACCCACACATTCTGCCACCCCTTGAGACAGACAGCAACTGACAGACGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACACATTCTGCCACCCCTTGAGACAGACAGCAACTGACAGACGC  600

seq1  CCTGTCGTGCTCTGTGAGTCACACCTCAGCTGGGAACTGGGACAGAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGTGCTCTGTGAGTCACACCTCAGCTGGGAACTGGGACAGAGAGA  650

seq1  GAGAGAGACACAGAGAGAGAGACAGAGACAGAGACAGAGAGAGACAGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACACAGAGAGAGAGACAGAGACAGAGACAGAGAGAGACAGAGA  700

seq1  GAGAGACAGACACAGAGACACAGAGAGACAGAGACAGAGACAGACAGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGACACAGAGACACAGAGAGACAGAGACAGAGACAGACAGACA  750

seq1  GACAGACAGAGACAGACAGAGACAGAGAGAATCAGAATTCTTCCAGAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGAGACAGACAGAGACAGAGAGAATCAGAATTCTTCCAGAATT  800

seq1  C  799
      |
seq2  C  801

seq1: chr17_56751824_56752851
seq2: B6Ng01-037D20.g_69_1094

seq1  GAATTCCTCAGGCTGACAGAGCGTGGAGTGTGGGAAGCTGAGGCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGGCTGACAGAGCGTGGAGTGTGGGAAGCTGAGGCAGGAGA  50

seq1  GGAGGAGGCTCAAGTACAGCTCAGCTGCTGGAGCACTTGGGTGTTACACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCTCAAGTACAGCTCAGCTGCTGGAGCACTTGGGTGTTACACG  100

seq1  CCTGTCATTATCAGGACAGCCTGGGCTGCACGAGACCATAGCTCACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATTATCAGGACAGCCTGGGCTGCACGAGACCATAGCTCACAGAA  150

seq1  AAAAAGTGAGGAAGGAGAGGAGTGAGGGGGCACAGCCTGTGATTCTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAGGAAGGAGAGGAGTGAGGGGGCACAGCCTGTGATTCTAGAT  200

seq1  AATTTGCAGCCCTCTCTACCCCAAGGCCTCCAGGGGACGCGAAACTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAGCCCTCTCTACCCCAAGGCCTCCAGGGGACGCGAAACTCCTT  250

seq1  CAACGAAACAGTTCATAAGGATCAGTCTATTGATCCGGACAGATTTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAAACAGTTCATAAGGATCAGTCTATTGATCCGGACAGATTTGTTG  300

seq1  TGACTGTTGTGACAGATCTATTGATCTGTTGGATCCGGAACCCTCCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGTGACAGATCTATTGATCTGTTGGATCCGGAACCCTCCATGA  350

seq1  CGAAGGCAAACGGAGTTCTGTAAACTGACTTCTGACCTCTGCAAGTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGCAAACGGAGTTCTGTAAACTGACTTCTGACCTCTGCAAGTTTGT  400

seq1  AGTGGCACATGCTCTCTCTCTTTCGAGACAGGGTTTCTCTGTGTAGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACATGCTCTCTCTCTTTCGAGACAGGGTTTCTCTGTGTAGCCCT  450

seq1  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAA  500

seq1  TTCGCCTGCCTCTGCCTCCCAAGTGCTGGATTAAAGGTGTGCGCCACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTGCCTCTGCCTCCCAAGTGCTGGATTAAAGGTGTGCGCCACCAC  550

seq1  GCCCGACACAAACAAAAAATTTTAAAAGCACTCTTTAAAGTCATTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGACACAAACAAAAAATTTTAAAAGCACTCTTTAAAGTCATTTTTAA  600

seq1  AAAGATTTGTTTATTTAATTAGTTATTA-TGTATACAGCGGTCTCCCTGC  649
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAGATTTGTTTATTTAATTAGTTATTATTGTATACAGCGGTCTCCCTGC  650

seq1  ATGTGTACCATCAGGCAAAATGAGGGCACCAGATCTCATTATAGATGGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACCATCAGGCAAAATGAGGGCACCAGATCTCATTATAGATGGTT  700

seq1  ATTAGCCACCATGTGGTTAACTGAGAATTGAAATCAGGACCTCTGGAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCACCATGTGGTTAACTGAGAATTGAAATCAGGACCTCTGGAAGA  750

seq1  GCAGACAGGGCTCTTAACCTCTGAGACATCTCTACAGAGCCCATTCCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCAGACAGGGCTCTTAACCTCTGAGACATCTCTACAGAGCCCATT-CCCT  799

seq1  CAAAAGCACTTTTATTGTCAGAGATTAAATTACTTCAACAGCTAACAACA  849
      |||||||||||||||||||||||||| ||||||||| |||||| ||||||
seq2  CAAAAGCACTTTTATTGTCAGAGATTTAATTACTTCCACAGCTTACAACA  849

seq1  GTGT-GAGGCAGCATTCCAACTCCTAACCTAAGGGATGATTCCCAAGCCG  898
      |||| ||||||||||||| ||||||||||| |||||||||||||||||||
seq2  GTGTGGAGGCAGCATTCC-ACTCCTAACCTTAGGGATGATTCCCAAGCCG  898

seq1  AGGTC-TCACGGGTGCCGTAGAACCTCCGGCCACCAGAGGTCGCCCGCAG  947
      ||||| ||||| |||||||||||||||||||||||||| |||||||||||
seq2  AGGTCTTCACGTGTGCCGTAGAACCTCCGGCCACCAGATGTCGCCCGCAG  948

seq1  CGCGCCTGTCTCTCTAGCCGGAAAGGCCTGCAAGTGGCATATATCCCAGG  997
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CGCGCCTGTCTCTCT-GCCGGAAAGGCCTGCAAGTGGCATATATCCCAGG  997

seq1  ATTCTGCGCGGTGCCGTTCTTCCTGTCCCGG  1028
      | ||||||||||||| ||||| |||||||||
seq2  A-TCTGCGCGGTGCCTTTCTT-CTGTCCCGG  1026