BAC Information

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BAC

Clone NameB6Ng01-038G24
Chromosome17 (Build37)
Map Location 21,674,562 - 21,825,431
singlet/doubletdoublet
Overlap geneZfp52, BC049807
Upstream geneEG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508
Downstream geneZfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038G24.bB6Ng01-038G24.g
ACCDH865997DH865998
length1,0541,070
definitionDH865997|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G24, 5' end.DH865998|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,674,562 - 21,675,614)(21,824,360 - 21,825,431)
sequence
gaattctttgccagcctggtctacacagtgagtttaaggatagccagggc
tacacagagaaactctgtttggggggaagggggataaagagacaaaaaca
aagttaagaggtattataatataggataatattagaaacaatcttgtgaa
taattatgatcatctacatcagaaaaaaaaatctctgcaatcctcttgtt
tttcttggttcaaaaaaaaaaaattctgcccatggatacatgaccaaatt
gctatgtagaagtcatcatatagaccaggctggactggaattcacagatt
tccacccacctctatctcctcagtgctcacattaaagttgtgcaccagca
ggaatgttcaaaccattgtcttttattttatggtctgttgacaatcagtg
gtgtgactgtggacttctcccaggaggaggggcaatgcctggtctctgct
cagagggctctgtacagactgcatgttgcagaattggaactctctgattt
ctgtgggtgaaaatagttttcttgctatctcccttgctcctccttagggt
tcttggcaaattagactgcaggtatgtgagatttgtgtggatgagtctca
cattctacagagaaaggtgaaatcctcacaggaacaaagacagatttcag
gaaattctttctcttctctgtgtgagttcctttgtaagtaaaaggcttcc
atcatttttagtccatgagaagttcatcactgatgtattgtattctcatt
ccaatcattcagctccatttctgcacctgagagttgattgagctgtgaat
ggaagtgtggttcaagttatgctaactgaaaatgcttctaaatgttttca
gtattatgacattgcctgacacttgcagggtcactgtagagtcttcattt
cttttctctttatctactgagcacagtacttttgttagacaggggctttc
tctttaaactctttctcatgtgcagggctcactggaacacccagacctca
gacctgctcacctgtgaacataacaaagaggccctagaagtgggagaggg
agga
gaattcccagtgatattttctttcagaatcttcagcacattaagggagaa
ttttttttttaagatttatttatttattatatgtaagtacactgtagctg
tcttcagacactccagaagagggagtcagatcttgttacagatggttgtg
agccaccatgtggttgctgggatttgaactctggaccttcggaagagcag
tcgggtgctcttacccactgagccatctcaccagcccaagggagaatttt
taattcacttatgttgagtttttctcacaactaataccatgtaattacaa
tgatggacatggagatatgggataaatattatacaatacagaaataaaat
gaagggtacatggcgcctctaaactagaaaatggaaagaaaaaaataaaa
caccatgaaaaagttcctttctctatcagactttccctaatttgatgtcg
ttttcaaatagcttaacagagtttactactgttaaggtcaatatatagaa
aggatgagtggaagttctacaagaaaaatgttctcaccgacagagaccag
gttgctgtaattctccaacatcacatcaatgtacagagccctctgagcag
agtccaggcattcccactcctcctgggggaagtccacagccacatcccca
aatgtcaacagacactgaaacaaaaacgcacagtgtgaccatgtgatgct
gggcacagtgcttttctggaaataggaagatgggatgtagatgaacaaag
accattacttagtgagatgatttctcacgtactcacactctgtaatgaat
gttctacctctgtgaaagcaggatgacacaatagtctcacaagcatgtcc
atgaaacaggacacacaattgaggtctggacatgattatctatctgttat
ggacactttatgtccctcagaatgacagtgtgcatgtctcagaggacagt
tcgtgatgagtacacttgctttaaaatgctatacctgaaatcatgctaaa
ctattgacattgaatcaatctgtctggtacttgggtcttaaagagaaaca
cagatgtgatgacatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21674562_21675614
seq2: B6Ng01-038G24.b_47_1100

seq1  GAATTCTTTGCCAGCCTGGTCTACACAGTGAGTTTAAGGATAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCAGCCTGGTCTACACAGTGAGTTTAAGGATAGCCAGGGC  50

seq1  TACACAGAGAAACTCTGTTTGGGGGGAAGGGGGATAAAGAGACAAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACTCTGTTTGGGGGGAAGGGGGATAAAGAGACAAAAACA  100

seq1  AAGTTAAGAGGTATTATAATATAGGATAATATTAGAAACAATCTTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAGAGGTATTATAATATAGGATAATATTAGAAACAATCTTGTGAA  150

seq1  TAATTATGATCATCTACATCAGAAAAAAAAATCTCTGCAATCCTCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATGATCATCTACATCAGAAAAAAAAATCTCTGCAATCCTCTTGTT  200

seq1  TTTCTTGGTTCAAAAAAAAAAAATTCTGCCCATGGATACATGACCAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGTTCAAAAAAAAAAAATTCTGCCCATGGATACATGACCAAATT  250

seq1  GCTATGTAGAAGTCATCATATAGACCAGGCTGGACTGGAATTCACAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTAGAAGTCATCATATAGACCAGGCTGGACTGGAATTCACAGATT  300

seq1  TCCACCCACCTCTATCTCCTCAGTGCTCACATTAAAGTTGTGCACCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACCTCTATCTCCTCAGTGCTCACATTAAAGTTGTGCACCAGCA  350

seq1  GGAATGTTCAAACCATTGTCTTTTATTTTATGGTCTGTTGACAATCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTCAAACCATTGTCTTTTATTTTATGGTCTGTTGACAATCAGTG  400

seq1  GTGTGACTGTGGACTTCTCCCAGGAGGAGGGGCAATGCCTGGTCTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACTGTGGACTTCTCCCAGGAGGAGGGGCAATGCCTGGTCTCTGCT  450

seq1  CAGAGGGCTCTGTACAGACTGCATGTTGCAGAATTGGAACTCTCTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCTCTGTACAGACTGCATGTTGCAGAATTGGAACTCTCTGATTT  500

seq1  CTGTGGGTGAAAATAGTTTTCTTGCTATCTCCCTTGCTCCTCCTTAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGAAAATAGTTTTCTTGCTATCTCCCTTGCTCCTCCTTAGGGT  550

seq1  TCTTGGCAAATTAGACTGCAGGTATGTGAGATTTGTGTGGATGAGTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAAATTAGACTGCAGGTATGTGAGATTTGTGTGGATGAGTCTCA  600

seq1  CATTCTACAGAGAAAGGTGAAATCCTCACAGGAACAAAGACAGATTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACAGAGAAAGGTGAAATCCTCACAGGAACAAAGACAGATTTCAG  650

seq1  GAAATTCTTTCTCTTCTCTGTGTGAGTTCCTTTGTAAGTAAAAGGCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTTCTCTTCTCTGTGTGAGTTCCTTTGTAAGTAAAAGGCTTCC  700

seq1  ATCATTTTTAGTCCATGAGAAGTTCATCACTGATGTATTGTATTCTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTAGTCCATGAGAAGTTCATCACTGATGTATTGTATTCTCATT  750

seq1  CCAATCATTCAGCTCCATTTCTGCACCTGAGAGTTGATTGAGCTGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATTCAGCTCCATTTCTGCACCTGAGAGTTGATTGAGCTGTGAAT  800

seq1  GGAAGTGTGGTTCAAGTTATGCTAACTGAAAATGCTTCTAAATGTTTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGTGGTTCAAGTTATGCTAACTGAAAATGCTTCTAAATGTTTTCA  850

seq1  GTATTATGACATTGCCTGACACTTGCAGGGTCACTGTAGAGTCTTCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGACATTGCCTGACACTTGCAGGGTCACTGTAGAGTCTTCATTT  900

seq1  CTTTTCTCTTTATCTACTGAGCACAGTAC-TTTGTTAGAACAGGGGCTTT  949
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  CTTTTCTCTTTATCTACTGAGCACAGTACTTTTGTTAG-ACAGGGGCTTT  949

seq1  CTCTTTAAACTCTTTCTCATGTGCAGGGCTCACT-GAACACCCAGACCTC  998
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTTTAAACTCTTTCTCATGTGCAGGGCTCACTGGAACACCCAGACCTC  999

seq1  AGACCTGCTCACCTGTGAAACATAACAAAGA-GCCCTAGAAGGTGGAGAG  1047
      ||||||||||||||||| ||||||||||||| ||||||||||  ||||||
seq2  AGACCTGCTCACCTGTG-AACATAACAAAGAGGCCCTAGAAGTGGGAGAG  1048

seq1  GGAGGA  1053
      ||||||
seq2  GGAGGA  1054

seq1: chr17_21824360_21825431
seq2: B6Ng01-038G24.g_66_1135 (reverse)

seq1  CATACATGTCATCACATCTGTGTTTCTCTATAAGACCCAAGTA-CAGACA  49
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CATACATGTCATCACATCTGTGTTTCTCTTTAAGACCCAAGTACCAGACA  50

seq1  GGATTGATTCAATGTCAATAGTTTAGCATGATTTTCAGGTATAGCATTTT  99
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  -GATTGATTCAATGTCAATAGTTTAGCATGA-TTTCAGGTATAGCATTTT  98

seq1  AAAGCAAGTGTACTCATCACGAACTGTCCTTCTGAGACATGCACACTGTC  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAGCAAGTGTACTCATCACGAACTGTCC-TCTGAGACATGCACACTGTC  147

seq1  ATTCTGAGGGACATAAAGTGTCCATAACAGATAGATAATCATGTCCAGAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGGGACATAAAGTGTCCATAACAGATAGATAATCATGTCCAGAC  197

seq1  CTCAATTGTGTGTCCTGTTTCATGGACATGCTTGTGAGACTATTGTGTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGTGTGTCCTGTTTCATGGACATGCTTGTGAGACTATTGTGTCA  247

seq1  TCCTGCTTTCACAGAGGTAGAACATTCATTACAGAGTGTGAGTACGTGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTCACAGAGGTAGAACATTCATTACAGAGTGTGAGTACGTGAG  297

seq1  AAATCATCTCACTAAGTAATGGTCTTTGTTCATCTACATCCCATCTTCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTCACTAAGTAATGGTCTTTGTTCATCTACATCCCATCTTCCT  347

seq1  ATTTCCAGAAAAGCACTGTGCCCAGCATCACATGGTCACACTGTGCGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAGAAAAGCACTGTGCCCAGCATCACATGGTCACACTGTGCGTTT  397

seq1  TTGTTTCAGTGTCTGTTGACATTTGGGGATGTGGCTGTGGACTTCCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAGTGTCTGTTGACATTTGGGGATGTGGCTGTGGACTTCCCCCA  447

seq1  GGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTCTGTACATTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTCTGTACATTGATG  497

seq1  TGATGTTGGAGAATTACAGCAACCTGGTCTCTGTCGGTGAGAACATTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGAGAATTACAGCAACCTGGTCTCTGTCGGTGAGAACATTTTT  547

seq1  CTTGTAGAACTTCCACTCATCCTTTCTATATATTGACCTTAACAGTAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGAACTTCCACTCATCCTTTCTATATATTGACCTTAACAGTAGTA  597

seq1  AACTCTGTTAAGCTATTTGAAAACGACATCAAATTAGGGAAAGTCTGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTAAGCTATTTGAAAACGACATCAAATTAGGGAAAGTCTGATA  647

seq1  GAGAAAGGAACTTTTTCATGGTGTTTTATTTTTTTCTTTCCATTTTCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGAACTTTTTCATGGTGTTTTATTTTTTTCTTTCCATTTTCTAG  697

seq1  TTTAGAGGCGCCATGTACCCTTCATTTTATTTCTGTATTGTATAATATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGCGCCATGTACCCTTCATTTTATTTCTGTATTGTATAATATTT  747

seq1  ATCCCATATCTCCATGTCCATCATTGTAATTACATGGTATTAGTTGTGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATATCTCCATGTCCATCATTGTAATTACATGGTATTAGTTGTGAG  797

seq1  AAAAACTCAACATAAGTGAATTAAAAATTCTCCCTTGGGCTGGTGAGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCAACATAAGTGAATTAAAAATTCTCCCTTGGGCTGGTGAGATG  847

seq1  GCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCAGAGTTCAA  897

seq1  ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACT  947

seq1  CCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAA  997

seq1  ATAAATAAATCTTAAAAAAAAAATTCTCCCTTAATGTGCTGAAGATTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCTTAAAAAAAAAATTCTCCCTTAATGTGCTGAAGATTCTG  1047

seq1  AAAGAAAATATCACTGGGAATTC  1072
      |||||||||||||||||||||||
seq2  AAAGAAAATATCACTGGGAATTC  1070