BAC Information

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BAC

Clone NameB6Ng01-038K06
Chromosome17 (Build37)
Map Location 32,405,447 - 32,481,779
singlet/doubletdoublet
Overlap geneBrd4, LOC100043433, Akap8, Akap8l
Upstream geneTsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs, LOC623242, U2af1, Cryaa, Snf1lk, Hsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, LOC100043434
Downstream geneWiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K06.bB6Ng01-038K06.g
ACCDH866142DH866143
length1,108739
definitionDH866142|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K06, 5' end.DH866143|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,405,447 - 32,406,561)(32,481,042 - 32,481,779)
sequence
gaattctccagactatttcaaaggctcacttatgcacagggtagtatcta
ccaggctgaataacccactgaacactggacagaactgttctagaaatttg
gagagttaccagctatgttggcacacgcctgtaatttcagcactcctaag
tcagagccaaaaggatcacagcaggccaaggccaggctggtctatataag
gagtttcgcgccagcaaaggatacaaaaatcttccccatttcacaataca
atacagacaaagtgagaaaaagctggagaaatgaatgaatgatttactga
ataagtgatttgagcaagtgcattgtgacatccaaactggctcaggaaga
atggggtgtatgactggaggaagtgagacaacacagaaatgaagcatgac
agtagcctggcacagaaaccaggatcctctaagaagggagtgtgactttg
gaagtggagaagtaactatgttgcagtaaattatattttgatcatgagtt
agtttaagagcaagttttacatggagcttacttaaccacttctaccgttt
tcttcgaactaagacatactcttgaaccaaacttttacttgagtagatta
cagctgtcattttatttatagtcagtttttttttaaaaaaaagtaaaata
ggtccgggaagtggtgacgcatgccttttccagcactcgggaggcagagg
caggcggatttctgagatcgaggccagccagatctacagagtaagttcca
ggacagccagggctacacagagaaaccctgtctcgaaagaacacaaataa
ataaacgtaaagtgagaaaaagcagaagtgactgttcagcagttaagagc
acttgctctttgtagaggacttggagttgatttccagtatctacatgggg
gtcaatagccacctgtatctaattccaggagcctgatactctcatctggc
ttcaatgggcatgacaacacagaaatgcatgcagacaatacccatataga
ggctctctagctctggctgaccaggacttaccatataaccaggatacaaa
gccaactcaggatttctgcctcctcttacctccaaggtgctaggataagg
tctgcact
gaattcagcactcccatggtcttggcaagtagtctgcagcagaagagcct
ggagggccacactatccagctggattttcagagattgtagctaggttatc
tcaggccaatgaacacacactgaaggaaatttccagttgataaaatcaat
tgtgaagaaacaggagtccacacctgatgagagatctacaggtgccgcca
gtctgttttcagtgctacccagtctaagaaggctgatcgcagtattcctt
gcctgtcctctctgtccaccacttgggtcctacagagacaactcactggt
ctgtttccttccctccgtctcaccttttttccgtgtgtgtgtatgtatgt
atgtatgtatgtatatatgtcactgcagcatgtggatgtcagaggagaca
acttataggaataggctctcctattcctttatgtggcttccagaatgaaa
ctcaagagttaggctgtttaattgccattgtagctattgaaaatcagtta
tctgaagtctttgttctctttcagtagctatttgtctgaattttctccgg
tactattctatgttaattattggatattataggtttttgaagtctgttaa
catgagtcacctggatttgatcttttaacattttgtttttgtttttccag
acagggtttctctgtgtagttttagctgtcttggaactcactctgtagag
catgctgaccttgaactcacagagatccatctgcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_32405447_32406561
seq2: B6Ng01-038K06.b_41_1148

seq1  GAATTCTCCAGACTATTTCAAAGGCTCACTTATGCACAGGGTAGTATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGACTATTTCAAAGGCTCACTTATGCACAGGGTAGTATCTA  50

seq1  CCAGGCTGAATAACCCACTGAACACTGGACAGAACTGTTCTAGAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGAATAACCCACTGAACACTGGACAGAACTGTTCTAGAAATTTG  100

seq1  GAGAGTTACCAGCTATGTTGGCACACGCCTGTAATTTCAGCACTCCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACCAGCTATGTTGGCACACGCCTGTAATTTCAGCACTCCTAAG  150

seq1  TCAGAGCCAAAAGGATCACAGCAGGCCAAGGCCAGGCTGGTCTATATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCAAAAGGATCACAGCAGGCCAAGGCCAGGCTGGTCTATATAAG  200

seq1  GAGTTTCGCGCCAGCAAAGGATACAAAAATCTTCCCCATTTCACAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCGCGCCAGCAAAGGATACAAAAATCTTCCCCATTTCACAATACA  250

seq1  ATACAGACAAAGTGAGAAAAAGCTGGAGAAATGAATGAATGATTTACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACAAAGTGAGAAAAAGCTGGAGAAATGAATGAATGATTTACTGA  300

seq1  ATAAGTGATTTGAGCAAGTGCATTGTGACATCCAAACTGGCTCAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGATTTGAGCAAGTGCATTGTGACATCCAAACTGGCTCAGGAAGA  350

seq1  ATGGGGTGTATGACTGGAGGAAGTGAGACAACACAGAAATGAAGCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGTATGACTGGAGGAAGTGAGACAACACAGAAATGAAGCATGAC  400

seq1  AGTAGCCTGGCACAGAAACCAGGATCCTCTAAGAAGGGAGTGTGACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTGGCACAGAAACCAGGATCCTCTAAGAAGGGAGTGTGACTTTG  450

seq1  GAAGTGGAGAAGTAACTATGTTGCAGTAAATTATATTTTGATCATGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAGAAGTAACTATGTTGCAGTAAATTATATTTTGATCATGAGTT  500

seq1  AGTTTAAGAGCAAGTTTTACATGGAGCTTACTTAACCACTTCTACCGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGAGCAAGTTTTACATGGAGCTTACTTAACCACTTCTACCGTTT  550

seq1  TCTTCGAACTAAGACATACTCTTGAACCAAACTTTTACTTGAGTAGATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGAACTAAGACATACTCTTGAACCAAACTTTTACTTGAGTAGATTA  600

seq1  CAGCTGTCATTTTATTTATAGTCAGTTTTTTTTTAAAAAAAAGTAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCATTTTATTTATAGTCAGTTTTTTTTTAAAAAAAAGTAAAATA  650

seq1  GGTCCGGGAAGTGGTGACGCATGCCTTTTCCAGCACTCGGGAGGCAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGGGAAGTGGTGACGCATGCCTTTTCCAGCACTCGGGAGGCAGAGG  700

seq1  CAGGCGGATTTCTGAGATCGAGGCCAGCCAGATCTACAGAGTAAGTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGATTTCTGAGATCGAGGCCAGCCAGATCTACAGAGTAAGTTCCA  750

seq1  GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAGAACACAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAGAACACAAATAA  800

seq1  ATAAACGTAAAGTGAGAAAAAGCAGAAGTGACTGTTCAGCAGTTAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTAAAGTGAGAAAAAGCAGAAGTGACTGTTCAGCAGTTAAGAGC  850

seq1  ACTTGCTCTTTGTAGAGGACTTGGAGTTGATTTCCAGTATCTACATGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCTTTGTAGAGGACTTGGAGTTGATTTCCAGTATCTACATGGGG  900

seq1  GTCAATAGCCACCTGTATCTAATTCCAGGAGGCCTGATACTCTCATCTGG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCAATAGCCACCTGTATCTAATTCCAGGA-GCCTGATACTCTCATCTGG  949

seq1  CTTCAATGGGCATGACAACACAGAAATGCATGCAGACAAATACCCATATA  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTCAATGGGCATGACAACACAGAAATGCATGCAGAC-AATACCCATATA  998

seq1  GAGGCTCTCTAGCTCTGGCTGACCAGGAACTTACCATATAAACCAGGATA  1050
      ||||||||||||||||||||||||||| ||||||||||| ||||||||||
seq2  GAGGCTCTCTAGCTCTGGCTGACCAGG-ACTTACCATAT-AACCAGGATA  1046

seq1  CAAAGCCAACTCAAGGATATCTGCCTCCCTCTACCTCCCAAGTGCTAGGA  1100
      |||||||||||| ||||| |||||||||   ||||||| | |||||||||
seq2  CAAAGCCAACTC-AGGATTTCTGCCTCCTCTTACCTCCAAGGTGCTAGGA  1095

seq1  ATAAAGGTCTGCACT  1115
         ||||||||||||
seq2  --TAAGGTCTGCACT  1108

seq1: chr17_32481042_32481779
seq2: B6Ng01-038K06.g_67_805 (reverse)

seq1  CACAGGCAGATGGATCTCTGTGAGTTCAAGGTCAGCCTGCTCTACAGAGT  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACAGGCAGATGGATCTCTGTGAGTTCAAGGTCAGCATGCTCTACAGAGT  50

seq1  GAGTTCCAAGACAGCTAAGACTACACAGAGAAACCCTGTCTGGAAAAACA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGTTCCAAGACAGCTAAAACTACACAGAGAAACCCTGTCTGGAAAAACA  100

seq1  AAAACAAAATGTTAAAAGATCAAATCCAGGTGACTCATGTTAACAGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATGTTAAAAGATCAAATCCAGGTGACTCATGTTAACAGACTT  150

seq1  C-AAAACCTATAATATCCAATAATTAACATAGAATAGTACCGGAGAAAAT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTATAATATCCAATAATTAACATAGAATAGTACCGGAGAAAAT  200

seq1  TCAGACAAATAGCTACTGAAAGAGAACAAAGACTTCAGATAACTGATTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAATAGCTACTGAAAGAGAACAAAGACTTCAGATAACTGATTTT  250

seq1  CAATAGCTACAATGGCAATTAAACAGCCTAACTCTTGAGTTTCATTCTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTACAATGGCAATTAAACAGCCTAACTCTTGAGTTTCATTCTGG  300

seq1  AAGCCACATAAAGGAATAGGAGAGCCTATTCCTATAAGTTGTCTCCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACATAAAGGAATAGGAGAGCCTATTCCTATAAGTTGTCTCCTCTG  350

seq1  ACATCCACATGCTGCAGTGACATATATACATACATACATACATACATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACATGCTGCAGTGACATATATACATACATACATACATACATACA  400

seq1  CACACACGGAAAAAAGGTGAGACGGAGGGAAGGAAACAGACCAGTGAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACGGAAAAAAGGTGAGACGGAGGGAAGGAAACAGACCAGTGAGTT  450

seq1  GTCTCTGTAGGACCCAAGTGGTGGACAGAGAGGACAGGCAAGGAATACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTAGGACCCAAGTGGTGGACAGAGAGGACAGGCAAGGAATACTG  500

seq1  CGATCAGCCTTCTTAGACTGGGTAGCACTGAAAACAGACTGGCGGCACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAGCCTTCTTAGACTGGGTAGCACTGAAAACAGACTGGCGGCACCT  550

seq1  GTAGATCTCTCATCAGGTGTGGACTCCTGTTTCTTCACAATTGATTTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTCTCATCAGGTGTGGACTCCTGTTTCTTCACAATTGATTTTAT  600

seq1  CAACTGGAAATTTCCTTCAGTGTGTGTTCATTGGCCTGAGATAACCTAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGAAATTTCCTTCAGTGTGTGTTCATTGGCCTGAGATAACCTAGC  650

seq1  TACAATCTCTGAAAATCCAGCTGGATAGTGTGGCCCTCCAGGCTCTTCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTCTGAAAATCCAGCTGGATAGTGTGGCCCTCCAGGCTCTTCTG  700

seq1  CTGCAGACTACTTGCCAAGACCATGGGAGTGCTGAATTC  738
      |||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGACTACTTGCCAAGACCATGGGAGTGCTGAATTC  739