BAC Information

Click to search

BAC

Clone NameB6Ng01-039B15
Chromosome17 (Build37)
Map Location 40,388,162 - 40,389,325
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3
Downstream geneCrisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039B15.b
ACCDH866464
length1,152
definitionDH866464|Mus musculus domesticus DNA, BAC clone: B6Ng01-039B15, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgactgtgaatatatttttttcatttttataaaattggatga
agtcagataatattagataatcaagtgatatctttggccaatgtttcttg
tgaagaaaggaaaattcttttgagtacagagccttctggtctgtaatgac
cacttactctctgcctggcctcaaaatcttcttgtcttcaactgggtgtc
ttcatactcctgactattttgctccatggttctatggttttaagcatgat
tcccatcgtaaggaggttcttgaaagcaattactcctatagagtatgttc
ttaaaattacttctaacttagttttcatgtaatacactgctgatgtttat
tttatgcctcaccctatttggggagaggggtgcttactttacattttctt
tgtgatgcatctactctacagaagaaccactgttcactaataccacctta
tgttgctcaggcaaaatgcagcctgttttttcccccaaagaagctgtttc
aatcactcattccactttgtacacagtggaaagtcatgctgacacaagtt
gctcactttatggtatccagaaaatgagagaaacacacatgtgctaaaat
ggctccttctatctccattatttgttttagattttaggattctgctgcct
gcatttttcttgaaatgcaacctgtttgtgtatctcttgacacttcctta
cagaagtacatagttgtgtggtttatcaatttcccaaatgtcctttagct
caatcaaattgagaagtaaggtaaaccctaacaggtctttgtaagaaaca
attctagtacaaatgactggataattctcaccttaaacattttttatggg
agaaaatggaatggtgttctggcacacagaacatacatatgaatgagaag
agaaatttggaaatagataccattttattatgcaaattttcttggtatct
aatgacttgcacactaaatccatatatgttgtatatttgaatgttcttct
gaaaaaacttgtcactacattaatgctctagacttgtaaaatatttaatc
tccctatggggatccaccataagtattatttccaattgttggtaatattc
tgtttcacctgtaaaggataaccaagttgcaaaatagattattgtgccta
ta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_40388162_40389325
seq2: B6Ng01-039B15.b_44_1195

seq1  GAATTCACTGACTGTGAATATATTTTTTTCA-TGCTATAAAATTGGATGA  49
      ||||||||||||||||||||||||||||||| |  |||||||||||||||
seq2  GAATTCACTGACTGTGAATATATTTTTTTCATTTTTATAAAATTGGATGA  50

seq1  AGTCAGATAATATTAGATAATCAAGTGATATCTTTGGCCAATGTTTCTTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATAATATTAGATAATCAAGTGATATCTTTGGCCAATGTTTCTTG  100

seq1  TGAAGAAAGGAAAATTCTTTTGAGTACAGAGCCTTCTGGTCTGTAATGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGGAAAATTCTTTTGAGTACAGAGCCTTCTGGTCTGTAATGAC  150

seq1  CACTTACTCTCTGCCTGGCCTCAAAATCTTCTTGTCTTCAACTGGGTGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTCTCTGCCTGGCCTCAAAATCTTCTTGTCTTCAACTGGGTGTC  200

seq1  TTCATACTCCTGACTATTTTGCTCCATGGTTCTATGGTTTTAAGCATGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTCCTGACTATTTTGCTCCATGGTTCTATGGTTTTAAGCATGAT  250

seq1  TCCCATCGTAAGGAGGTTCTTGAAAGCAATTACTCCTATAGAGTATGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCGTAAGGAGGTTCTTGAAAGCAATTACTCCTATAGAGTATGTTC  300

seq1  TTAAAATTACTTCTAACTTAGTTTTCATGTAATACACTGCTGATGTTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTACTTCTAACTTAGTTTTCATGTAATACACTGCTGATGTTTAT  350

seq1  TTTATGCCTCACCCTATTTGGGGAGAGGGGTGCTTACTTTACATTTTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCTCACCCTATTTGGGGAGAGGGGTGCTTACTTTACATTTTCTT  400

seq1  TGTGATGCATCTACTCTACAGAAGAACCACTGTTCACTAATACCACCTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGCATCTACTCTACAGAAGAACCACTGTTCACTAATACCACCTTA  450

seq1  TGTTGCTCAGGCAAAATGCAGCCTGTTTTTTCCCCCAAAGAAGCTGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCAGGCAAAATGCAGCCTGTTTTTTCCCCCAAAGAAGCTGTTTC  500

seq1  AATCACTCATTCCACTTTGTACACAGTGGAAAGTCATGCTGACACAAGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTCATTCCACTTTGTACACAGTGGAAAGTCATGCTGACACAAGTT  550

seq1  GCTCACTTTATGGTATCCAGAAAATGAGAGAAACACACATGTGCTAAAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTTATGGTATCCAGAAAATGAGAGAAACACACATGTGCTAAAAT  600

seq1  GGCTCCTTCTATCTCCATTATTTGTTTTAGATTTTAGGATTCTGCTGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTCTATCTCCATTATTTGTTTTAGATTTTAGGATTCTGCTGCCT  650

seq1  GCATTTTTCTTGAAATGCAACCTGTTTGTGTATCTCTTGACACTTCCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCTTGAAATGCAACCTGTTTGTGTATCTCTTGACACTTCCTTA  700

seq1  CAGAAGTACATAGTTGTGTGGTTTATCAATTTCCCAAATGTCCTTTAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTACATAGTTGTGTGGTTTATCAATTTCCCAAATGTCCTTTAGCT  750

seq1  CAATCAAATTGAGAAGTAAGGTAAACCCTAACAGGTCTTTGTAAGAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAATTGAGAAGTAAGGTAAACCCTAACAGGTCTTTGTAAGAAACA  800

seq1  ATTCTAGTACAAATGACTGGATAATTCTCACCTTAAACATTTTTTATGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTACAAATGACTGGATAATTCTCACCTTAAACATTTTTTATGGG  850

seq1  AGAAAATGGAATGGTGTTCTGGCACACAGAACATACATATGAATGAGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGAATGGTGTTCTGGCACACAGAACATACATATGAATGAGAAG  900

seq1  AGAAATTTGGAAATAGATACCATTTTATTATGCAAATTTTCTTGGTATCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGGAAATAGATACCATTTTATTATGCAAATTTTCTTGGTATCT  950

seq1  AATGACTTGCACACTAAATCCATATATGTTGTATATTTGAATGTTCCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATGACTTGCACACTAAATCCATATATGTTGTATATTTGAATGTT-CTTC  999

seq1  TGAAAAAAACTTGTCACTACATTAATGCTCTAGACTTGTAATATATATTA  1049
      || |||||||||||||||||||||||||||||||||||||| |||| |||
seq2  TG-AAAAAACTTGTCACTACATTAATGCTCTAGACTTGTAAAATAT-TTA  1047

seq1  ATCT-CCTATGGGAAAAATCAAAACTATAGTATTATTTCCAAATTGTGTG  1098
      |||| ||||||||    ||| |   || |||||||||||| ||||||  |
seq2  ATCTCCCTATGGG---GATCCACCATA-AGTATTATTTCC-AATTGTTGG  1092

seq1  ATATATTCTGTTTCACCTTGTAAAAGGTATAACCAAAGTTGCAAAAATTA  1148
        ||||||||||||||| ||||||  | |||||| |||||||||||  ||
seq2  TAATATTCTGTTTCACC-TGTAAA--GGATAACC-AAGTTGCAAAA--TA  1136

seq1  GATTATTGTGCATATA  1164
      ||||||||||| ||||
seq2  GATTATTGTGCCTATA  1152