BAC Information

Click to search

BAC

Clone NameB6Ng01-039G07
Chromosome17 (Build37)
Map Location 16,113,099 - 16,241,806
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G07.bB6Ng01-039G07.g
ACCDH866675DH866676
length7681,153
definitionDH866675|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G07, 5' end.DH866676|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,113,099 - 16,113,866)(16,240,639 - 16,241,806)
sequence
gaattcttatcactattgttctttgtttcaggtgtttgaagacagttcaa
gtgagttcctgaaatctttgtggaatcattcccacatttctccttgtgga
ggaggctggctgctttctgtccctctctttggtatgtttacatttgaaaa
actcctggtttatcagagaaatggtgaaaagtaacacagcttccaattgt
ggtctaaagtgatgagaaactgtgtgaatgtctgtgccccccctagttat
acttactaattgagaaacatacatttttctgttgccgccttgtacatgca
aggcaagcatttgtctactgagctacacctctagtctggagacgcttcct
tttggacagacatatggatgctagacaaaagtgtatcagaataatggtgg
gactccacacatctttctgtgaatcaaaaagaaggtctttgtggagctga
gtttaacaagtacaagttatattactaaccctagccagtcatgaatatag
ctactttgatataacttctggttttgaaagtttgactaatggatctgtta
gccctatgcactggatagataaataggaaaaatcctaaaacagaaggaaa
atcatatctgatttatttgttctgaaaactttgtgaagagcactcatcta
aatagtgaaggggggaggtatttgttcatagtgacactgcaactctggtc
tttacatttaattcaaggtaaaaattaaaacactggactaagatgatctg
gggggagaggtgaggtgg
gaattcagttcatctaacacaaataatgacattctccaaaaacaccagtt
gtatttccttagcctcaaagctctaaaccatgtgtattagttcttagtct
tctaaatttagggcatccgtttataaaagaaatttagttctacatgagcc
cataatctctgatctgggctagtagacacaagtaagatgtctgcaggagc
cattttcctgttttttatgcattacatgtttagtactgtgtttgaaaatg
cacaaatatttataaataaatgaacagtaagtaatgcaatgataaattaa
agtaacccatgggcaaagatttctaatggtttctgaacaattagatcagg
agctcttgagaaattttacaataaatgacgaggctaacaccagctgaatc
tacttatcaatcttaatatcccaaagagaatggcaataaggcatcatgta
cctcctgatgtgatgcaaatgcaatgttacaaaactcagatgaatagtct
gcaaaaatatgcactgagtacactaacctctttaggtttatggaaaataa
acaaaaacccaaagcagagaaatgtagtaaatacaactttacaatattgt
tatcaagattcaaaatgtaaagaaacacattataaacaaatatttaacaa
ataatttataagaaatatggtactgttaaacaaatttatgaaatgtagga
gaaaagcattataataataagagagagaaacatgagacaacattaaggaa
tcacttttgttattttattctagggattataattacagcatttcttcctt
cccctttcctcccttcaagcccttccatacaatccttcatcccttagttc
ctctcagatgtatagccttttttcattgttgttacatgcatatatgaata
cacatatattcctaaatatacatgtttagcctgtatacttgcaggtatgt
atttgggctgactatctggtattgataatctgctaagggctgtcacgtga
aagctacttttctgatttcagcatttcttgattgctatagtttttgtttg
ggactggggttcatgggaatctctctggtctattttggcataccatatgc
tatcgtcttgttcagctccaattaggcaacaatttaatagactttaccgg
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16113099_16113866
seq2: B6Ng01-039G07.b_43_810

seq1  GAATTCTTATCACTATTGTTCTTTGTTTCAGGTGTTTGAAGACAGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCACTATTGTTCTTTGTTTCAGGTGTTTGAAGACAGTTCAA  50

seq1  GTGAGTTCCTGAAATCTTTGTGGAATCATTCCCACATTTCTCCTTGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCTGAAATCTTTGTGGAATCATTCCCACATTTCTCCTTGTGGA  100

seq1  GGAGGCTGGCTGCTTTCTGTCCCTCTCTTTGGTATGTTTACATTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGCTGCTTTCTGTCCCTCTCTTTGGTATGTTTACATTTGAAAA  150

seq1  ACTCCTGGTTTATCAGAGAAATGGTGAAAAGTAACACAGCTTCCAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGTTTATCAGAGAAATGGTGAAAAGTAACACAGCTTCCAATTGT  200

seq1  GGTCTAAAGTGATGAGAAACTGTGTGAATGTCTGTGCCCCCCCTAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAAGTGATGAGAAACTGTGTGAATGTCTGTGCCCCCCCTAGTTAT  250

seq1  ACTTACTAATTGAGAAACATACATTTTTCTGTTGCCGCCTTGTACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTAATTGAGAAACATACATTTTTCTGTTGCCGCCTTGTACATGCA  300

seq1  AGGCAAGCATTTGTCTACTGAGCTACACCTCTAGTCTGGAGACGCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGCATTTGTCTACTGAGCTACACCTCTAGTCTGGAGACGCTTCCT  350

seq1  TTTGGACAGACATATGGATGCTAGACAAAAGTGTATCAGAATAATGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACAGACATATGGATGCTAGACAAAAGTGTATCAGAATAATGGTGG  400

seq1  GACTCCACACATCTTTCTGTGAATCAAAAAGAAGGTCTTTGTGGAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACACATCTTTCTGTGAATCAAAAAGAAGGTCTTTGTGGAGCTGA  450

seq1  GTTTAACAAGTACAAGTTATATTACTAACCCTAGCCAGTCATGAATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACAAGTACAAGTTATATTACTAACCCTAGCCAGTCATGAATATAG  500

seq1  CTACTTTGATATAACTTCTGGTTTTGAAAGTTTGACTAATGGATCTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGATATAACTTCTGGTTTTGAAAGTTTGACTAATGGATCTGTTA  550

seq1  GCCCTATGCACTGGATAGATAAATAGGAAAAATCCTAAAACAGAAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATGCACTGGATAGATAAATAGGAAAAATCCTAAAACAGAAGGAAA  600

seq1  ATCATATCTGATTTATTTGTTCTGAAAACTTTGTGAAGAGCACTCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCTGATTTATTTGTTCTGAAAACTTTGTGAAGAGCACTCATCTA  650

seq1  AATAGTGAAGGGGGGAGGTATTTGTTCATAGTGACACTGCAACTCTGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAAGGGGGGAGGTATTTGTTCATAGTGACACTGCAACTCTGGTC  700

seq1  TTTACATTTAATTCAAGGTAAAAATTAAAACACTGGACTAAGATGATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTAATTCAAGGTAAAAATTAAAACACTGGACTAAGATGATCTG  750

seq1  GGGGGAGAGGTGAGGTGG  768
      ||||||||||||||||||
seq2  GGGGGAGAGGTGAGGTGG  768

seq1: chr17_16240639_16241806
seq2: B6Ng01-039G07.g_67_1219 (reverse)

seq1  CACCCGTATAAAGTCTTATTAATATGATTGCCTAAATGTGAGCTGAACAA  50
      ||||||  ||||||| |||||| ||  |||||||| || ||||||||| |
seq2  CACCCG-GTAAAGTC-TATTAA-ATTGTTGCCTAATTG-GAGCTGAAC-A  45

seq1  AGACGATAGCAAATAGATATGCCAAAATAGACCAG-GAGACTCCCATGAG  99
      ||||||||||| || | |||||||||||||||||| |||| |||||||| 
seq2  AGACGATAGCATAT-GGTATGCCAAAATAGACCAGAGAGATTCCCATGA-  93

seq1  ACCCCAGTCCCACACAAAGAACTATAGGCAATCAAGAAATGCTGAAAATC  149
      |||||||||||| ||||| ||||||| ||||||||||||||||| |||||
seq2  ACCCCAGTCCCAAACAAA-AACTATA-GCAATCAAGAAATGCTG-AAATC  140

seq1  AGAAAAGTAGCCTTCTTCACGTGACAGCACCTTAGCAGATTATTCAATAC  199
      |||||||||||    ||||||||||||| ||||||||||||| |||||||
seq2  AGAAAAGTAGC---TTTCACGTGACAGC-CCTTAGCAGATTA-TCAATAC  185

seq1  CAGATAGTCAGCCCAAATACATACCTGCAAGTATACAGGCTAAACATGTT  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAGATAGTCAGCCCAAATACATACCTGCAAGTATACAGGCTAAACATG-T  234

seq1  ATATTTAGGAATATATGTGTATTCATATATGCATGTAACAACAATGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGGAATATATGTGTATTCATATATGCATGTAACAACAATGAAAA  284

seq1  AAGGCTATACATCTGAGAGGAACTAAGGGATGAAGGATTGTATGGAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTATACATCTGAGAGGAACTAAGGGATGAAGGATTGTATGGAAGGG  334

seq1  CTTGAAGGGAGGAAAGGGGAAGGAAGAAATGCTGTAATTATAATCCCTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGGAGGAAAGGGGAAGGAAGAAATGCTGTAATTATAATCCCTAG  384

seq1  AATAAAATAACAAAAGTGATTCCTTAATGTTGTCTCATGTTTCTCTCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAACAAAAGTGATTCCTTAATGTTGTCTCATGTTTCTCTCTCT  434

seq1  TATTATTATAATGCTTTTCTCCTACATTTCATAAATTTGTTTAACAGTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATAATGCTTTTCTCCTACATTTCATAAATTTGTTTAACAGTAC  484

seq1  CATATTTCTTATAAATTATTTGTTAAATATTTGTTTATAATGTGTTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCTTATAAATTATTTGTTAAATATTTGTTTATAATGTGTTTCTT  534

seq1  TACATTTTGAATCTTGATAACAATATTGTAAAGTTGTATTTACTACATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTGAATCTTGATAACAATATTGTAAAGTTGTATTTACTACATTT  584

seq1  CTCTGCTTTGGGTTTTTGTTTATTTTCCATAAACCTAAAGAGGTTAGTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTGGGTTTTTGTTTATTTTCCATAAACCTAAAGAGGTTAGTGT  634

seq1  ACTCAGTGCATATTTTTGCAGACTATTCATCTGAGTTTTGTAACATTGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGCATATTTTTGCAGACTATTCATCTGAGTTTTGTAACATTGCA  684

seq1  TTTGCATCACATCAGGAGGTACATGATGCCTTATTGCCATTCTCTTTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCACATCAGGAGGTACATGATGCCTTATTGCCATTCTCTTTGGG  734

seq1  ATATTAAGATTGATAAGTAGATTCAGCTGGTGTTAGCCTCGTCATTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGATTGATAAGTAGATTCAGCTGGTGTTAGCCTCGTCATTTATT  784

seq1  GTAAAATTTCTCAAGAGCTCCTGATCTAATTGTTCAGAAACCATTAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTTCTCAAGAGCTCCTGATCTAATTGTTCAGAAACCATTAGAAA  834

seq1  TCTTTGCCCATGGGTTACTTTAATTTATCATTGCATTACTTACTGTTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCCATGGGTTACTTTAATTTATCATTGCATTACTTACTGTTCAT  884

seq1  TTATTTATAAATATTTGTGCATTTTCAAACACAGTACTAAACATGTAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAAATATTTGTGCATTTTCAAACACAGTACTAAACATGTAATG  934

seq1  CATAAAAAACAGGAAAATGGCTCCTGCAGACATCTTACTTGTGTCTACTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAACAGGAAAATGGCTCCTGCAGACATCTTACTTGTGTCTACTA  984

seq1  GCCCAGATCAGAGATTATGGGCTCATGTAGAACTAAATTTCTTTTATAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATCAGAGATTATGGGCTCATGTAGAACTAAATTTCTTTTATAAA  1034

seq1  CGGATGCCCTAAATTTAGAAGACTAAGAACTAATACACATGGTTTAGAGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGCCCTAAATTTAGAAGACTAAGAACTAATACACATGGTTTAGAGC  1084

seq1  TTTGAGGCTAAGGAAATACAACTGGTGTTTTTGGAGAATGTCATTATTTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCTAAGGAAATACAACTGGTGTTTTTGGAGAATGTCATTATTTG  1134

seq1  TGTTAGATGAACTGAATTC  1168
      |||||||||||||||||||
seq2  TGTTAGATGAACTGAATTC  1153