BAC Information

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BAC

Clone NameB6Ng01-039I17
Chromosome2 (Build37)17 (Build37)
Map Location 96,971,968 - 96,973,32341,587,951 - 41,588,054
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I17.bB6Ng01-039I17.g
ACCDH866788DH866789
length1,056389
definitionDH866788|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I17, 5' end.DH866789|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,971,968 - 96,973,323)(41,587,951 - 41,588,054)
sequence
gaattcatggtcccaacctgatggtgctatttcaggagggagaaatattt
tggagacaatggttaggtaaacaaaatggttcactgaaaagatttaaatg
tgctatacaattctggatctggcccaacaccctatttccagattcaccat
gatgtgatgaactaacactgttaccagggctttggccgtgttacacaaaa
ccacctcagttatagactgaaagccactctattattagacaaaataaatt
cttcctcattgagtagtttattaggtatttcattatagcaatactgaaga
taactaacaatgtgaccactgagtggctacaaagttcaaaacttaagtcc
aaatacttctgtagttcttaaattttggatttctttgatgctgtttctgg
ttcatctcgcatgctatatacaaagatagggcccctgttgagcattttct
acttgactaaaatatacgggccctgtcatttttcacttatcataaatatt
catttataaacttataataagggttggtatattttagtcccttctctact
agacatagataacagttatttatctagcatcgtttcccttggggccaaat
gttttgacatagagcacattaggcaactcttatttcgttatttatacttc
tacactaaatcctcaggggtttctatactttaatgaatttattttgcttt
agtgtcactatttctgcctcttttatatgtcatcatttattcatatacta
ctcattcctacaaatttttgccataatcatattctgttctaaaatccatt
atagagataatgaatacatctctataaaatacctatctgacaacatctag
tattcatacttaggtagaaagcatgccatgtaaatagatagtataagact
actttaaagaatcaggagcatgataagaaataaagcaagatactttggtg
gatagtagcaagatggaagtagagaaagtggctcataagaagatttttct
aagggatatgaagccaaacttccatctaatgagagctgtgggtggtggag
caaagt
gaattccagtggtgccagagattaccttataaggggagaaggagtttaac
catcctactggggtacatgatcttctcctgggagcaaatgtggaggtggt
tggacacgcaggctctgggcaggggtgccatattgaatgaggggccgggt
actgcagaacttgcagcaacacgccttaccagaattgacgtaacctaact
tcttctctctctctctctctctctctctctctctctctctctctatatat
atatatatatatggagagtttgagtaaatatttgcgagattttcatttca
aatgcgattcccatagccccatataccctccccctgccgggcggcccaac
ccacccactcttgcttcctggctctgcctttctcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96971968_96973323
seq2: B6Ng01-039I17.b_47_1102

seq1  GAATTCATGGTCCCAACCTGATGGTGCTATTTCAGGAGGGAGAAATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTCCCAACCTGATGGTGCTATTTCAGGAGGGAGAAATATTT  50

seq1  TGGAGACAATGGTTAGGTAAACAAAATGGTTCACTGAAAAGATTTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAATGGTTAGGTAAACAAAATGGTTCACTGAAAAGATTTAAATG  100

seq1  TGCTATACAATTCTGGATCTGGCCCAACACCCTATTTCCAGATTCACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATACAATTCTGGATCTGGCCCAACACCCTATTTCCAGATTCACCAT  150

seq1  GATGTGATGAACTAACACTGTTACCAGGGCTTTGGCCGTGTTACACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATGAACTAACACTGTTACCAGGGCTTTGGCCGTGTTACACAAAA  200

seq1  CCACCTCAGTTATAGACTGAAAGCCACTCTATTATTAGACAAAATAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCAGTTATAGACTGAAAGCCACTCTATTATTAGACAAAATAAATT  250

seq1  CTTCCTCATTGAGTAGTTTATTAGGTATTTCATTATAGCAATACTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCATTGAGTAGTTTATTAGGTATTTCATTATAGCAATACTGAAGA  300

seq1  TAACTAACAATGTGACCACTGAGTGGCTACAAAGTTCAAAACTTAAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAACAATGTGACCACTGAGTGGCTACAAAGTTCAAAACTTAAGTCC  350

seq1  AAATACTTCTGTAGTTCTTAAATTTTGGATTTCTTTGATGCTGTTTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCTGTAGTTCTTAAATTTTGGATTTCTTTGATGCTGTTTCTGG  400

seq1  TTCATCTCGCATGCTATATACAAAGATAGGGCCCCTGTTGAGCATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCGCATGCTATATACAAAGATAGGGCCCCTGTTGAGCATTTTCT  450

seq1  ACTTGACTAAAATATACGGGCCCTGTCATTTTTCACTTATCATAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTAAAATATACGGGCCCTGTCATTTTTCACTTATCATAAATATT  500

seq1  CATTTATAAACTTATAATAAGGGTTGGTATATTTTAGTCCCTTCTCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAACTTATAATAAGGGTTGGTATATTTTAGTCCCTTCTCTACT  550

seq1  AGACATAGATAACAGTTATTTATCTAGCATCGTTTCCCTTGGGGCCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGATAACAGTTATTTATCTAGCATCGTTTCCCTTGGGGCCAAAT  600

seq1  GTTTTGACATAGAGCACATTAGGCAACTCTTATTTCGTTATTTATACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACATAGAGCACATTAGGCAACTCTTATTTCGTTATTTATACTTC  650

seq1  TACACTAAATCCTCAGGGGTTTCTATACTTTAATGAATTTATTTTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAAATCCTCAGGGGTTTCTATACTTTAATGAATTTATTTTGCTTT  700

seq1  AGTGTCACTATTTCTGCCTCTTTTATATGTCATCATTTATTCATATACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACTATTTCTGCCTCTTTTATATGTCATCATTTATTCATATACTA  750

seq1  CTCATTCCTACAAATTTTTGCCATAATCATATTCTGTTCTAAAATCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTACAAATTTTTGCCATAATCATATTCTGTTCTAAAATCCATT  800

seq1  ATAGAGATAATGAATACATCTCTATAAAATACCTATCTGACAACATCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATAATGAATACATCTCTATAAAATACCTATCTGACAACATCTAG  850

seq1  TATTCATACTTAGGTAGAAAGCATGCCATGTAAATAGATAGTATAAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATACTTAGGTAGAAAGCATGCCATGTAAATAGATAGTATAAGACT  900

seq1  ACTTTAAAGAATCAGGAGCATGATAAGAAATAAAGCAAGATACTTTGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAGAATCAGGAGCATGATAAGAAATAAAGCAAGATACTTTGGTG  950

seq1  GATAGTAGCAAGATGGAAGTAGAGAAAAGTGGCTCATAAGAAGATTTTTC  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATAGTAGCAAGATGGAAGTAGAG-AAAGTGGCTCATAAGAAGATTTTTC  999

seq1  TAAGGGGATATTGAAGCCAAAACTTCCATCTAAGTGAAGAGCTGTGGGTG  1050
      ||| |||||| ||||||| |||||||||||||| || |||||||||||||
seq2  TAA-GGGATA-TGAAGCC-AAACTTCCATCTAA-TG-AGAGCTGTGGGTG  1044

seq1  GTGAGGCAAAAGTTTTACAGATGAATGTCCTTAGCCCCGAGTCTTCTATA  1100
      |||  |||||                                        
seq2  GTGGAGCAAAGT--------------------------------------  1056

seq1  TAAATGGGAAATCCAGCCCTGCCATCAAAATACAATAAGAGGACATCATA  1150
                                                        
seq2  --------------------------------------------------  1056

seq1  GGCAGTGTTAGAAAGATATGCAGCCATCCATCCATGTGCCCTGAAAGGAC  1200
                                                        
seq2  --------------------------------------------------  1056

seq1  TGAATTTTATTGTGAAGCCTGGATAAGATCCAATACTATCTTCATTCTGA  1250
                                                        
seq2  --------------------------------------------------  1056

seq1  TTTCTCCCCAGTGTGGTCTCATCTTTTAGAGATGAGACTGCATCCTGTGT  1300
                                                        
seq2  --------------------------------------------------  1056

seq1  TCATTTTCTTGTCAATACCTGCCCAGCATCCCAACCTCACAAATTCAGAG  1350
                                                        
seq2  --------------------------------------------------  1056

seq1  CAAAGT  1356
            
seq2  ------  1056

seq1: chr17_41587951_41588054
seq2: B6Ng01-039I17.g_268_454

seq1  --TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATATAGATAT  48
         ||||||||||||||||||||||||||||||||||| | |||| ||||
seq2  TTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATAT  50

seq1  ATATACACAT---GCCTCTCTGTCTATCTCTGC----CTTTCCTCTCTCT  91
      ||||| | ||   |  | |  ||  || | |||     |||| | ||   
seq2  ATATATATATGGAGAGTTTGAGTAAATATTTGCGAGATTTTCATTTCAAA  100

seq1  TCAATTTCCTGTA-------------------------------------  104
      |    ||||  ||                                     
seq2  TGCGATTCCCATAGCCCCATATACCCTCCCCCTGCCGGGCGGCCCAACCC  150

seq1  -------------------------------------  104
                                           
seq2  ACCCACTCTTGCTTCCTGGCTCTGCCTTTCTCCTGTA  187