BAC Information

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BAC

Clone NameB6Ng01-039L13
Chromosome17 (Build37)
Map Location 77,361,817 - 77,399,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043886, EG624348
Downstream geneLOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039L13.bB6Ng01-039L13.g
ACCDH866911DH866912
length1,1511,004
definitionDH866911|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L13, 5' end.DH866912|Mus musculus domesticus DNA, BAC clone: B6Ng01-039L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,398,507 - 77,399,406)(77,361,817 - 77,362,831)
sequence
gaattccaccaacagaaaggcaagtagaattttaagacaaattatcacat
gaattaaaaatctatgtattaaccaagatcttgaaaaaaaagattctact
aaatgaagaataaattaagggaattttctaaaagtgcagtaatcaaggca
ttctaatcaggataagaaaattgtaaagcaggtaactggaagaaaatgaa
gtcaagaaagaacacatttacaattaattatccaacatacataaatagat
tttttcaaagtctttccaacaaatattgcttgaacccatttagtatcctg
atggagaaagaacaggaaacaactcaacattttattttctaaaactctcc
attaaaaacagtaattcaaaacaatgagttagaagttaatacgtatattg
ttaagtgtgatgcaatgggttaaccatattgaagttaattaattttatat
caaaaattgtgatgcctttaaattaaaatgtccaggtagttttgatagga
ggaaaaacactaagtttcattaacacatcaatttagacaaatataaaaat
aattttcaaaatatagtttgtgcaatgaaatacaacaattgagataaata
ttcatcaatactgttctcaaaaagaggttttatatagaatatataaggaa
catttaaaaataataatacaaagagaagaattaaatagaaatagagaaat
aatgtggagggacacactgcacagaaaacataaaaatagatacttagaat
gtgaaaagttacttgaggtcatttctcccagatgactcaactacccaaag
aataatatgagcaatatttttaaaccaactcataaaaagaagtcaagact
gataaggtatcgccattaacatttatagccagcatgcctacacaagagta
aatgatcataggactgggaaaggacaacagtgtttgctcagtaactttaa
tatgtgagtccctagccaggggcagaacaataaatgagaaacatagagat
tgagaggatatattaaactctttatttaaatgtcctacatgtagacgttc
attacaaactactagaggggagtgattcacattgatcagaccaatattca
ccaaagtaatacattgtagttttttattactaaatgataagttatattgc
t
gaattcactaggaatttgagagtttctagaatactcggtactatttgagg
ctaaatgtgcctatagaagaatcctgttcatttttaattgaattctttac
tagagagtcgtgtgtgaagtcaagataattgcacagacctgtttatcctc
ctccggtcttactacctctttctctactattctccaatgacatattagat
ttagactacacagccatcgtgccccattaccatgatttcttgggaggtga
tgaccttctctcgctaattacctgtgtagtctcagaaaattcaaccacat
ctatcatgaaaatatgtcatattcccatttcttggagtaactagataagt
taatgaaataatgcattattatgctaatggagatcaaatgcaggctcagc
ttctaaaggtgatgaagaatgtatccttcatcttcatcaataccaaggag
ttgaccaattgcccatgtgctttctaagtgcttgcattgattctgcacta
tttattacttgacctatccataggaaagagggttaaagaaatgaattgag
tccctccaactttgtaaacacatccaaatatgtgcattggaagcacttaa
acaaatattcaacacccttagtcatcaggaaaatgcaaataaaaacaact
ctgagattctgacttatactgatcagaatggttgagatcaaaaactcatc
ttagccattctgaagtgtgaaagatagaacgtagatcaagagagaaacac
tcctccattgctggtgggaatatgaatttgtacagccactttcgaaagtg
gtttgacatttttgcagagaatcagaaatagttctactgcaggatgcaac
tatatcactcctgggtatataccccaaaatgccccacaataccataagga
cacttgctgaactatattcctagcagctttatcttttagctgaaacagga
aaaactaaatgtctccaagtgagagtgataagaatatgtgtactctacac
agtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77398507_77399406
seq2: B6Ng01-039L13.b_317_1194 (reverse)

seq1  AGCAATATAACATTAATCATTTTAAGTAAATAAAAAAACTTACAATGTAT  50
      |||||||||||  | |||||||  ||| |||||||||   ||||||||||
seq2  AGCAATATAAC--TTATCATTT--AGT-AATAAAAAA--CTACAATGTAT  43

seq1  TACTTTTGGTGAAATATTGGTCTGAATCAATGTTGAATTCACT-CACTCT  99
      ||| ||||||| |||||||||||| ||||||| |||| ||||| | ||||
seq2  TAC-TTTGGTG-AATATTGGTCTG-ATCAATG-TGAA-TCACTCCCCTCT  88

seq1  AGTAAGTTTGTAATGAACGTCTTACATGTAGGAACATTTTAAATTAAAAG  149
      ||| ||||||||||||||||| |||||||||| ||| |||||||  ||||
seq2  AGT-AGTTTGTAATGAACGTC-TACATGTAGG-ACA-TTTAAAT--AAAG  132

seq1  AGTTTAATATATCCTCTTCAATCTCTATGTTTCTCATTTTATTTGTTCTT  199
      |||||||||||||||| ||||||||||||||||||||||   |||||| |
seq2  AGTTTAATATATCCTC-TCAATCTCTATGTTTCTCATTT--ATTGTTC-T  178

seq1  GCCCCTGGCTAGGGACTCACATATTAAAGTTACCTGAGCAAACACTGTTG  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCCCTGGCTAGGGACTCACATATTAAAGTTA-CTGAGCAAACACTGTTG  227

seq1  TCCTTTCCCAGTCCTATGATCATTTACTCTTGTGTAGGCATGCTGGCTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCCCAGTCCTATGATCATTTACTCTTGTGTAGGCATGCTGGCTAT  277

seq1  AAATGTTAATGGCGATACCTTATCAGTCTTGACTTCTTTTTATGAGTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAATGGCGATACCTTATCAGTCTTGACTTCTTTTTATGAGTTGG  327

seq1  TTTAAAAATATTGCTCATATTATTCTTTGGGTAGTTGAGTCATCTGGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATATTGCTCATATTATTCTTTGGGTAGTTGAGTCATCTGGGAG  377

seq1  AAATGACCTCAAGTAACTTTTCACATTCTAAGTATCTATTTTTATGTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCTCAAGTAACTTTTCACATTCTAAGTATCTATTTTTATGTTTT  427

seq1  CTGTGCAGTGTGTCCCTCCACATTATTTCTCTATTTCTATTTAATTCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGTGTGTCCCTCCACATTATTTCTCTATTTCTATTTAATTCTTC  477

seq1  TCTTTGTATTATTATTTTTAAATGTTCCTTATATATTCTATATAAAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATTATTATTTTTAAATGTTCCTTATATATTCTATATAAAACCT  527

seq1  CTTTTTGAGAACAGTATTGATGAATATTTATCTCAATTGTTGTATTTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGAACAGTATTGATGAATATTTATCTCAATTGTTGTATTTCAT  577

seq1  TGCACAAACTATATTTTGAAAATTATTTTTATATTTGTCTAAATTGATGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAACTATATTTTGAAAATTATTTTTATATTTGTCTAAATTGATGT  627

seq1  GTTAATGAAACTTAGTGTTTTTCCTCCTATCAAAACTACCTGGACATTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAAACTTAGTGTTTTTCCTCCTATCAAAACTACCTGGACATTTT  677

seq1  AATTTAAAGGCATCACAATTTTTGATATAAAATTAATTAACTTCAATATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGGCATCACAATTTTTGATATAAAATTAATTAACTTCAATATG  727

seq1  GTTAACCCATTGCATCACACTTAACAATATACGTATTAACTTCTAACTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCCATTGCATCACACTTAACAATATACGTATTAACTTCTAACTCA  777

seq1  TTGTTTTGAATTACTGTTTTTAATGGAGAGTTTTAGAAAATAAAATGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGAATTACTGTTTTTAATGGAGAGTTTTAGAAAATAAAATGTTG  827

seq1  AGTTGTTTCCTGTTCTTTCTCCATCAGGATACTAAATGGGTTCAAGCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTCCTGTTCTTTCTCCATCAGGATACTAAATGGGTTCAAGCAAT  877

seq1  A  900
      |
seq2  A  878

seq1: chr17_77361817_77362831
seq2: B6Ng01-039L13.g_68_1071

seq1  GAATTCACTAGGAATTTGAGAGTTTCTAGAATACTCGGTACTATTTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGAATTTGAGAGTTTCTAGAATACTCGGTACTATTTGAGG  50

seq1  CTAAATGTGCCTATAGAAGAATCCTGTTCATTTTTAATTGAATTCTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTGCCTATAGAAGAATCCTGTTCATTTTTAATTGAATTCTTTAC  100

seq1  TAGAGAGTCGTGTGTGAAGTCAAGATAATTGCACAGACCTGTTTATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTCGTGTGTGAAGTCAAGATAATTGCACAGACCTGTTTATCCTC  150

seq1  CTCCGGTCTTACTACCTCTTTCTCTACTATTCTCCAATGACATATTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGTCTTACTACCTCTTTCTCTACTATTCTCCAATGACATATTAGAT  200

seq1  TTAGACTACACAGCCATCGTGCCCCATTACCATGATTTCTTGGGAGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTACACAGCCATCGTGCCCCATTACCATGATTTCTTGGGAGGTGA  250

seq1  TGACCTTCTCTCGCTAATTACCTGTGTAGTCTCAGAAAATTCAACCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCTCTCGCTAATTACCTGTGTAGTCTCAGAAAATTCAACCACAT  300

seq1  CTATCATGAAAATATGTCATATTCCCATTTCTTGGAGTAACTAGATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATGAAAATATGTCATATTCCCATTTCTTGGAGTAACTAGATAAGT  350

seq1  TAATGAAATAATGCATTATTATGCTAATGGAGATCAAATGCAGGCTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATAATGCATTATTATGCTAATGGAGATCAAATGCAGGCTCAGC  400

seq1  TTCTAAAGGTGATGAAGAATGTATCCTTCATCTTCATCAATACCAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGTGATGAAGAATGTATCCTTCATCTTCATCAATACCAAGGAG  450

seq1  TTGACCAATTGCCCATGTGCTTTCTAAGTGCTTGCATTGATTCTGCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAATTGCCCATGTGCTTTCTAAGTGCTTGCATTGATTCTGCACTA  500

seq1  TTTATTACTTGACCTATCCATAGGAAAGAGGGTTAAAGAAATGAATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACTTGACCTATCCATAGGAAAGAGGGTTAAAGAAATGAATTGAG  550

seq1  TCCCTCCAACTTTGTAAACACATCCAAATATGTGCATTGGAAGCACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACTTTGTAAACACATCCAAATATGTGCATTGGAAGCACTTAA  600

seq1  ACAAATATTCAACACCCTTAGTCATCAGGAAAATGCAAATAAAAACAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTCAACACCCTTAGTCATCAGGAAAATGCAAATAAAAACAACT  650

seq1  CTGAGATTCTGACTTATACTGATCAGAATGGTTGAGATCAAAAACTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATTCTGACTTATACTGATCAGAATGGTTGAGATCAAAAACTCATC  700

seq1  TTAGCCATTCTGAAGTGTGAAAGATAGAACGTAGATCAAGAGAGAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATTCTGAAGTGTGAAAGATAGAACGTAGATCAAGAGAGAAACAC  750

seq1  TCCTCCATTGCTGGTGGGAATATGAATTTGTACAGCCACTTTCGAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGCTGGTGGGAATATGAATTTGTACAGCCACTTTCGAAAGTG  800

seq1  GTTTGACATTTTTGCAGAGAATCAGAAATAGTTCTACTGCAGGATGCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACATTTTTGCAGAGAATCAGAAATAGTTCTACTGCAGGATGCAAC  850

seq1  TATATCACTCCTGGGTATATACCCCAAAATGCCCCACAATACCATAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACTCCTGGGTATATACCCCAAAATGCCCCACAATACCATAAGGA  900

seq1  CACTTGCTGAACTATATTCCTAGCAGCTTTATTCTTTTTAGGCTGAAACA  950
      ||||||||||||||||||||||||||||||| ||||||   |||||||||
seq2  CACTTGCTGAACTATATTCCTAGCAGCTTTA-TCTTTT--AGCTGAAACA  947

seq1  GGAAAAAACTTAAATGTCTCCCAAGTGAAGAGTGGATAAAGAATATGTGG  1000
      |||||||   ||||||||| ||||||| ||||| ||| |||||||||| |
seq2  GGAAAAA--CTAAATGTCT-CCAAGTG-AGAGT-GAT-AAGAATATGT-G  990

seq1  TACTTCTACACAGTG  1015
      ||| |||||||||||
seq2  TAC-TCTACACAGTG  1004