BAC Information

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BAC

Clone NameB6Ng01-040L24
Chromosome17 (Build37)
Map Location 58,546,574 - 58,672,688
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneEmr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040L24.bB6Ng01-040L24.g
ACCDH867619DH867620
length1,0831,115
definitionDH867619|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L24, 5' end.DH867620|Mus musculus domesticus DNA, BAC clone: B6Ng01-040L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,546,574 - 58,547,663)(58,671,560 - 58,672,688)
sequence
gaattctccagcaaatcagagtgctaagggaatgactgaagatgcacagg
ccagggagcatcctcatgaagcttaaggctgtgtcacaacttacttatta
tctaatgcatgcatacattaagaattggaagcagtgcattttactcatct
ttaaatatgtacaaagtgtgtgtgtgtatatgtgaatggataaggcttgg
gtgtcaggtctctccttcatgctgatttaggggcacagtctcccttgtgt
ctacatgtgatctagatatgtgaccagttactgagattacagattggagt
ctcagaattcagcttttaatgcaggctctcagattaaactcaggacatca
ttctacataatatttatttaggttccattcaaatgctttatttgaattta
tttctcactacagaaatctttttagtctacatagatgtgcattgcatatt
ctctttccctgtggttgacatttttgggtgaagtttacttttttgggttt
ttttttcctctttctagatccatttggagagagagatgagcgtgaaccgc
tcacaaatgcagtcccaagtgacttggcagtcattggaggtaatgtgtct
tcattactgaaagcaggaaagataactatgtccctgttctctgaaaaaag
ttacatgaagctttcctaacccataaacatccatcacccagaatcaggca
ctctctgtccaacccttagtctctccatgcatggtgtaagaaggagacac
tcttcctgtgccaggagctctgtggcctcattctgcctcagaatctgcag
ggagctgagttctcaaccaacagctggcacatttactgacaggcaggcag
cctacatcatgctcatttcatccagttttcacttctaaagcagaaacaaa
cacaccaataaaattatgtgtggaaagaagtcacattgaggcagacagat
ggacagagctgcagtcattttcagttttttttttactaaattgcttgggt
agatctaatgagcttgaagaaacccatgtgactgaagttccaagctagca
ttccatctggttgtggatataagctgcctgatc
gaattctctccctccatccttcaaaaacatcttatatattggctacattc
aacatatttgttgatatcatcatggttaacatgtgctcatgagagacaaa
gaagagttcccctggtttgggatatcttccacttctgtggaaaaactttg
ctgtgctattggtgctactaccaaattatttagcccatttttctgtgttc
acacttgtgagtttgatttccaatgatgtgcatcattgatattgcttggc
accttctattattgatcttctgccttctcatacttcagcacctgttgagt
aaactatgtctactctgctctcatttctgagtttactgaaaggctccctt
gaccttgtggctgaaggtgacacaaataggaacaatcaataaagcgagag
tattgtctgaaatccaatctgtaaattatcttcatgattgtcagagtaca
acaaatatcatacatgctaatgtcaaattgatagagaaagttacaagaaa
atgtttaatagagatgatcagatagtataggccaactttaaagaggatgg
cctacttttgtgtttgaaaggactgaagataaaagaggatgcagaaggaa
ctagactagactcaaactttaaaggcaaactgtgtcttaaggtcacagtg
gtaagcttctgcattactattacaaagacatctactcaacacaagctttt
gcatttggccataatacaattggaggggaaagaactggggaatacagata
tgtaccgaaggcatcatatgtctaaagtgagttaataaaatgaaacaggt
catttacaaaaataaagagcagaaaaatggtattattttgtgtctgcctt
ttgtttcttttgaaataattaccagagatacaaaggttctttgggcagct
acaaggagttgagtgtaagttgacagtccagatgaatggaagaagcatgg
agagatgacagtgaaaagtggcagtctgaatttaccagctccttgagcag
agggagagaagaacaggtagtgggtgttgatgaaaactgtcctcctgtat
gacataatgaccacttgatcacaagctactaatgctgttgaagcttgaaa
attcctgtggaggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58546574_58547663
seq2: B6Ng01-040L24.b_44_1126

seq1  GAATTCTCCAGCAAATCAGAGTGCTAAGGGAATGACTGAAGATGCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGCAAATCAGAGTGCTAAGGGAATGACTGAAGATGCACAGG  50

seq1  CCAGGGAGCATCCTCATGAAGCTTAAGGCTGTGTCACAACTTACTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGCATCCTCATGAAGCTTAAGGCTGTGTCACAACTTACTTATTA  100

seq1  TCTAATGCATGCATACATTAAGAATTGGAAGCAGTGCATTTTACTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGCATGCATACATTAAGAATTGGAAGCAGTGCATTTTACTCATCT  150

seq1  TTAAATATGTACAAAGTGTGTGTGTGTATATGTGAATGGATAAGGCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGTACAAAGTGTGTGTGTGTATATGTGAATGGATAAGGCTTGG  200

seq1  GTGTCAGGTCTCTCCTTCATGCTGATTTAGGGGCACAGTCTCCCTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGTCTCTCCTTCATGCTGATTTAGGGGCACAGTCTCCCTTGTGT  250

seq1  CTACATGTGATCTAGATATGTGACCAGTTACTGAGATTACAGATTGGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGTGATCTAGATATGTGACCAGTTACTGAGATTACAGATTGGAGT  300

seq1  CTCAGAATTCAGCTTTTAATGCAGGCTCTCAGATTAAACTCAGGACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATTCAGCTTTTAATGCAGGCTCTCAGATTAAACTCAGGACATCA  350

seq1  TTCTACATAATATTTATTTAGGTTCCATTCAAATGCTTTATTTGAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACATAATATTTATTTAGGTTCCATTCAAATGCTTTATTTGAATTTA  400

seq1  TTTCTCACTACAGAAATCTTTTTAGTCTACATAGATGTGCATTGCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTACAGAAATCTTTTTAGTCTACATAGATGTGCATTGCATATT  450

seq1  CTCTTTCCCTGTGGTTGACATTTTTGGGTGAAGTTTACTTTTTTGGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCCTGTGGTTGACATTTTTGGGTGAAGTTTACTTTTTTGGGTTT  500

seq1  TTTTTTCCTCTTTCTAGATCCATTTGGAGAGAGAGATGAGCGTGAACCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTCTTTCTAGATCCATTTGGAGAGAGAGATGAGCGTGAACCGC  550

seq1  TCACAAATGCAGTCCCAAGTGACTTGGCAGTCATTGGAGGTAATGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATGCAGTCCCAAGTGACTTGGCAGTCATTGGAGGTAATGTGTCT  600

seq1  TCATTACTGAAAGCAGGAAAGATAACTATGTCCCTGTTCTCTGAAAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTGAAAGCAGGAAAGATAACTATGTCCCTGTTCTCTGAAAAAAG  650

seq1  TTACATGAAGCTTTCCTAACCCATAAACATCCATCACCCAGAATCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGAAGCTTTCCTAACCCATAAACATCCATCACCCAGAATCAGGCA  700

seq1  CTCTCTGTCCAACCCTTAGTCTCTCCATGCATGGTGTAAGAAGGAGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCCAACCCTTAGTCTCTCCATGCATGGTGTAAGAAGGAGACAC  750

seq1  TCTTCCTGTGCCAGGAGCTCTGTGGCCTCATTCTGCCTCAGAATCTGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTGCCAGGAGCTCTGTGGCCTCATTCTGCCTCAGAATCTGCAG  800

seq1  GGAGCTGAGTTCTCAACCAACAGCTGGCACATTTACTGACAGGCAGGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGAGTTCTCAACCAACAGCTGGCACATTTACTGACAGGCAGGCAG  850

seq1  CCTACATCATGCTCATTTCATCCAGTTTTCACTTCTAAAGCAGAAACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTACATCATGCTCATTTCATCCAGTTTTCACTTCTAAAGCAGAAAC-AA  899

seq1  ACACACCAATAAAATTATGTGTGGAAAGAAGTCACATTGAGGCAGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAATAAAATTATGTGTGGAAAGAAGTCACATTGAGGCAGACAGA  949

seq1  TGGACAGAGCTGCAGTCATTTTCAGTTTTTTTTTTTCACTAAATTGCTTG  1000
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TGGACAGAGCTGCAGTCATTTTCAGTTTTTTTTTT--ACTAAATTGCTTG  997

seq1  GGTTAGATCTAATGAGCTTGATGAAACCCATGTGACTGAAGTTCCAAAGC  1050
      || |||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GG-TAGATCTAATGAGCTTGAAGAAACCCATGTGACTGAAGTTCC-AAGC  1045

seq1  TAGCATTCCATCTGTTTGTGGATATAGAGCTTGCCTGATC  1090
      |||||||||||||| ||||||||||| ||| |||||||||
seq2  TAGCATTCCATCTGGTTGTGGATATA-AGC-TGCCTGATC  1083

seq1: chr17_58671560_58672688
seq2: B6Ng01-040L24.g_69_1183 (reverse)

seq1  CACCTCCAC-GGAATTCTACAAGCTTCCAAACAGCATTAGTAGCTGTGGA  49
      ||||||||| |||||| | ||||||||  ||||||||||||||||   ||
seq2  CACCTCCACAGGAATT-TTCAAGCTTC--AACAGCATTAGTAGCTTGTGA  47

seq1  TCAAGTGTTCAAATATGTCATACCAGGAGGGACAGTTTCTCATTCAACAC  99
      ||||||| || | ||||||||| ||||| ||||||||| ||| |||||||
seq2  TCAAGTGGTC-ATTATGTCATA-CAGGA-GGACAGTTT-TCA-TCAACAC  92

seq1  ACACTACCTGTTTCTTCCTCTTCCCCTCTGCCTCAAGGAGCTGGTAAATT  149
       ||||||||| ||||| ||||  ||||||| |||||||||||||||||||
seq2  CCACTACCTG-TTCTT-CTCT--CCCTCTG-CTCAAGGAGCTGGTAAATT  137

seq1  CAAGACTGCCAACTTTTCACTGTCATCTCTCCATGCTTCTTCCATTCATC  199
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  C-AGACTGCC-ACTTTTCACTGTCATCTCTCCATGCTTCTTCCATTCATC  185

seq1  TGGACTGTCAACTTACACTCAACTCCTTGTAGCTGCCCAAAGAACCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTCAACTTACACTCAACTCCTTGTAGCTGCCCAAAGAACCTTTG  235

seq1  TATCTCTGGTAATTATTTCAAAAGAAACAAAAGGCAGACACAAAATAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGGTAATTATTTCAAAAGAAACAAAAGGCAGACACAAAATAATA  285

seq1  CCATTTTTCTGCTCTTTATTTTTGTAAATGACCTGTTTCATTTTATTAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTCTGCTCTTTATTTTTGTAAATGACCTGTTTCATTTTATTAAC  335

seq1  TCACTTTAGACATATGATGCCTTCGGTACATATCTGTATTCCCCAGTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTAGACATATGATGCCTTCGGTACATATCTGTATTCCCCAGTTCT  385

seq1  TTCCCCTCCAATTGTATTATGGCCAAATGCAAAAGCTTGTGTTGAGTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCCAATTGTATTATGGCCAAATGCAAAAGCTTGTGTTGAGTAGA  435

seq1  TGTCTTTGTAATAGTAATGCAGAAGCTTACCACTGTGACCTTAAGACACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGTAATAGTAATGCAGAAGCTTACCACTGTGACCTTAAGACACA  485

seq1  GTTTGCCTTTAAAGTTTGAGTCTAGTCTAGTTCCTTCTGCATCCTCTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTTTAAAGTTTGAGTCTAGTCTAGTTCCTTCTGCATCCTCTTTT  535

seq1  ATCTTCAGTCCTTTCAAACACAAAAGTAGGCCATCCTCTTTAAAGTTGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGTCCTTTCAAACACAAAAGTAGGCCATCCTCTTTAAAGTTGGC  585

seq1  CTATACTATCTGATCATCTCTATTAAACATTTTCTTGTAACTTTCTCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTATCTGATCATCTCTATTAAACATTTTCTTGTAACTTTCTCTAT  635

seq1  CAATTTGACATTAGCATGTATGATATTTGTTGTACTCTGACAATCATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGACATTAGCATGTATGATATTTGTTGTACTCTGACAATCATGAA  685

seq1  GATAATTTACAGATTGGATTTCAGACAATACTCTCGCTTTATTGATTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTACAGATTGGATTTCAGACAATACTCTCGCTTTATTGATTGTT  735

seq1  CCTATTTGTGTCACCTTCAGCCACAAGGTCAAGGGAGCCTTTCAGTAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTGTCACCTTCAGCCACAAGGTCAAGGGAGCCTTTCAGTAAAC  785

seq1  TCAGAAATGAGAGCAGAGTAGACATAGTTTACTCAACAGGTGCTGAAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGAGAGCAGAGTAGACATAGTTTACTCAACAGGTGCTGAAGTA  835

seq1  TGAGAAGGCAGAAGATCAATAATAGAAGGTGCCAAGCAATATCAATGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGCAGAAGATCAATAATAGAAGGTGCCAAGCAATATCAATGATG  885

seq1  CACATCATTGGAAATCAAACTCACAAGTGTGAACACAGAAAAATGGGCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATTGGAAATCAAACTCACAAGTGTGAACACAGAAAAATGGGCTA  935

seq1  AATAATTTGGTAGTAGCACCAATAGCACAGCAAAGTTTTTCCACAGAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGGTAGTAGCACCAATAGCACAGCAAAGTTTTTCCACAGAAGT  985

seq1  GGAAGATATCCCAAACCAGGGGAACTCTTCTTTGTCTCTCATGAGCACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATATCCCAAACCAGGGGAACTCTTCTTTGTCTCTCATGAGCACAT  1035

seq1  GTTAACCATGATGATATCAACAAATATGTTGAATGTAGCCAATATATAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCATGATGATATCAACAAATATGTTGAATGTAGCCAATATATAAG  1085

seq1  ATGTTTTTGAAGGATGGAGGGAGAGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  ATGTTTTTGAAGGATGGAGGGAGAGAATTC  1115