BAC Information

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BAC

Clone NameB6Ng01-040N21
Chromosome3 (Build37)17 (Build37)
Map Location 41,059,224 - 41,059,73778,083,189 - 78,084,174
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040N21.bB6Ng01-040N21.g
ACCDH867703DH867704
length990984
definitionDH867703|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N21, 5' end.DH867704|Mus musculus domesticus DNA, BAC clone: B6Ng01-040N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(78,083,189 - 78,084,174)
sequence
gaattctttgtttagctctgagccccatttttaatgaggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattaatcctc
taactgatttaggatagttaaagatactttcccaatctgttggtggcctt
tttgtcttattgacgttgtcttttgccttacagaagctttgcaattttat
gtagtcccatttgttgattctcaatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggcttttccccaat
ttctcctctataagtttcactgtctctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcaattcgct
ttcttctacatgataatcgccagttgtggcagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagcccccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtgttcaattctattccattatt
ctacttatctgtcgctataccagtaccatgcagtttttatcacaattgtt
ggtgggattgcaagcttgtacaacaattggaaatcagtctggcggttcct
cagaaaattggacttagtactactggaggatcccacagtacctctcctgg
gcatatatccagaagatgttccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttctaatagccagaagctggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatttacgcaa
tggagtactactcagctattaaaaagaatgaatttatgaaattcataggc
aaatagatggacttggagggcatcatcctgaatgtggtaacccaatcaca
aaggactcacatgatatgaactcactgatagtggatatta
gaattcaagtgaagagattttggagatattaaaagaatgttcagtcctgt
caaatgcagcataaaaattgaatatatgcatataaatgtattgagttgag
caattcaactttttaattaatttacaaatgacatttaatatcataaatat
agtataaggtatatttaggtggatggaaaaggaacagaaaccattttgga
attcatttttaaaatgctaaaaatagaaactaccaattattcaacaattt
cggaactgaatatatgtagccaaagaaagtgaagtcaagacatctaatgg
atatttgtatacccacatttttgcagtaccatccatagtagtcaagagat
ggaagcaatgcccttctattagtgaatggatttagaaaatggggtacaca
taaacaaatggaatgttattaggccataagaagaatgaaaccctgtcact
catggcaaaatatatgaaaatggagaagattgtgttaattgaattgagac
taacacagaaagataaataccatatgttcacttctacatgtaaagctaga
aaagatctcaaagtagcagagtagaataaaaattgctggagattaagagg
tgtggagaataaataaaagttggctaatagatataaaactctgttacgta
gaaatagtgggtcttagaattcaatagtataacagaatagagcaatttct
tcttcacaatagtataggagtagggcttggtttattgccagtgtacaggt
ctagttctatactatgtattttgtgataaaatgaaagagcttactatctg
caaacataaagcttgataggagggggctggagagatggttcggtggttaa
aataacttactccttttcagaggatatagctttgatttctagattgcata
tcaagaggctcataactacttttcactccagttcagagagttcacttgtt
aagtttccacaccaaccttcattctcctgcacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-040N21.b_47_560 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGGGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||||||||||||||||||||||||||||||||| |||||||||   |
seq2  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGCCACAACTGGCGAT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAAAGCGAATTGATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACAGTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||| ||||||||||||| |||||||||| ||||||||
seq2  ACTTATAGAGGAGAAATTGGGGAAAAGCCTCGAAGATATGGGCACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATC  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
       |||||||||||  ||| ||| ||||||||||||| ||||||||||||| 
seq2  AACAAATGGGACTACATAAAATTGCAAAGCTTCTGTAAGGCAAAAGACAA  350

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      ||||||||||||||||||| ||||||||||||||||||| ||||||| ||
seq2  CGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGTATCTTTAACT  400

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||| ||| ||| ||||||||||||||||| |||||||||||
seq2  ATCCTAAATCAGTTAGAGGATTAATATCCAATATATATAAAGAACTCAAG  450

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| ||||||||||||||||||| |||| ||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCTCATT-AAAAATGGGGCTCAGA  499

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  514

seq1: chr17_78083189_78084174
seq2: B6Ng01-040N21.g_70_1052 (reverse)

seq1  AGTGCAGGTGAATGAAGGTGTGTGTGGAAACTAGACAAGTTGGACTCTCT  50
      |||||||| ||||||||||  |||||||||||  ||||| || |||||||
seq2  AGTGCAGGAGAATGAAGGTTGGTGTGGAAACTTAACAAG-TGAACTCTCT  49

seq1  GGAACTGGAGTGAAAGGTAGTTATGAGCCTCCTGATATGCATTCTAGAAA  100
       |||||||||||||| ||||||||||||||| ||||||||| ||||||||
seq2  -GAACTGGAGTGAAAAGTAGTTATGAGCCTCTTGATATGCAATCTAGAAA  98

seq1  TCAAAGCTATATCCTCTGGAAAAGGAGTAAGTTATTTTAACCACCGAACC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCAAAGCTATATCCTCT-GAAAAGGAGTAAGTTATTTTAACCACCGAACC  147

seq1  ATCTCTCCAGCCCCCTCCTATCAAGCTTTATGTTTGCAGATAGTAAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCCCTCCTATCAAGCTTTATGTTTGCAGATAGTAAGCTC  197

seq1  TTTCATTTTATCACAAAATACATAGTATAGAACTAGACCTGTACACTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTATCACAAAATACATAGTATAGAACTAGACCTGTACACTGGC  247

seq1  AATAAACCAAGCCCTACTCCTATACTATTGTGAAGAAGAAATTGCTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAAGCCCTACTCCTATACTATTGTGAAGAAGAAATTGCTCTAT  297

seq1  TCTGTTATACTATTGAATTCTAAGACCCACTATTTCTACGTAACAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTATACTATTGAATTCTAAGACCCACTATTTCTACGTAACAGAGTT  347

seq1  TTATATCTATTAGCCAACTTTTATTTATTCTCCACACCTCTTAATCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTATTAGCCAACTTTTATTTATTCTCCACACCTCTTAATCTCCA  397

seq1  GCAATTTTTATTCTACTCTGCTACTTTGAGATCTTTTCTAGCTTTACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTATTCTACTCTGCTACTTTGAGATCTTTTCTAGCTTTACATG  447

seq1  TAGAAGTGAACATATGGTATTTATCTTTCTGTGTTAGTCTCAATTCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGAACATATGGTATTTATCTTTCTGTGTTAGTCTCAATTCAATT  497

seq1  AACACAATCTTCTCCATTTTCATATATTTTGCCATGAGTGACAGGGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATCTTCTCCATTTTCATATATTTTGCCATGAGTGACAGGGTTTC  547

seq1  ATTCTTCTTATGGCCTAATAACATTCCATTTGTTTATGTGTACCCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTTATGGCCTAATAACATTCCATTTGTTTATGTGTACCCCATTT  597

seq1  TCTAAATCCATTCACTAATAGAAGGGCATTGCTTCCATCTCTTGACTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCCATTCACTAATAGAAGGGCATTGCTTCCATCTCTTGACTACT  647

seq1  ATGGATGGTACTGCAAAAATGTGGGTATACAAATATCCATTAGATGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGGTACTGCAAAAATGTGGGTATACAAATATCCATTAGATGTCTT  697

seq1  GACTTCACTTTCTTTGGCTACATATATTCAGTTCCGAAATTGTTGAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCACTTTCTTTGGCTACATATATTCAGTTCCGAAATTGTTGAATAA  747

seq1  TTGGTAGTTTCTATTTTTAGCATTTTAAAAATGAATTCCAAAATGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGTTTCTATTTTTAGCATTTTAAAAATGAATTCCAAAATGGTTTC  797

seq1  TGTTCCTTTTCCATCCACCTAAATATACCTTATACTATATTTATGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTTCCATCCACCTAAATATACCTTATACTATATTTATGATATT  847

seq1  AAATGTCATTTGTAAATTAATTAAAAAGTTGAATTGCTCAACTCAATACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATTTGTAAATTAATTAAAAAGTTGAATTGCTCAACTCAATACA  897

seq1  TTTATATGCATATATTCAATTTTTATGCTGCATTTGACAGGACTGAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCATATATTCAATTTTTATGCTGCATTTGACAGGACTGAACAT  947

seq1  TCTTTTAATATCTCCAAAATCTCTTCACTTGAATTC  986
      ||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATATCTCCAAAATCTCTTCACTTGAATTC  983