BAC Information

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BAC

Clone NameB6Ng01-041I06
Chromosome17 (Build37)
Map Location 39,984,956 - 39,985,250
singlet/doubletsinglet
Overlap geneLOC672857
Upstream geneLOC100043297, LOC100043300, EG668200, LOC627695
Downstream geneLOC634967, Pgk2, Crisp3, Crisp1, LOC668229, LOC100043756, EG433107, EG619517, Crisp2, Rhag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I06.bB6Ng01-041I06.g
ACCDH868160DH868161
length234329
definitionDH868160|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I06, 5' end.DH868161|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgataattgattctcgccggaatttactgtggaaatcatcactcagggac
ttttaggcagaaaactagccagtcagcctctggatagacaaggttcaaca
gttcagagaaccaggccatcgcaaatagttcacagacctgcaaggaagac
atgcagatccctgccccccaccccacccctcccccagccccacccaaaca
tagggagaaaaggcagtgtgggggagggggaggt
ccagtttgtgcgggtcataagcttgcgttgattaagtccctgccctttgt
acacaccgcccgtcgctactaccgattggatggtttagtgaggccctcgg
atcggccccgccggggtcggcccacggccctggcggagcgctgagaagac
ggtcgaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgt
aggtgaacctgcggaaggatcattaacgggagactgtggaggagcggcgg
cgtggctcgttctccccgtcttgtttgtgtcctctccgggaggcgcgtgc
ttcccgggtcccgtcgcccgcgtttggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_39984956_39985250
seq2: B6Ng01-041I06.g_82_403

seq1  GTGCGGGCCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACC  50

seq1  GCCCGTCGCTACTACCGATTGGATGGTTTAGTGA----------------  84
      ||||||||||||||||||||||||||||||||||                
seq2  GCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCC  100

seq1  -----------GGCCCACGGCCCTGGTGGAGCGCTGAGAAGACGGTCGAA  123
                 ||||||||||||||| |||||||||||||||||||||||
seq2  CCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAA  150

seq1  CTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAA  173
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTATCTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGAA  200

seq1  CCTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAGCGGCGGCGTGGCT  223
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGGAAGGATCATTAACGGGAGACTGTGGAGGAGCGGCGGCGTGGCT  250

seq1  CGCTCTCCCCGTCTTGTGTGTGTCCTCGCCGGGAGGCGCGTGCGTCCCGG  273
      || |||||||||||||| ||||||||| ||||||||||||||| ||||||
seq2  CGTTCTCCCCGTCTTGTTTGTGTCCTCTCCGGGAGGCGCGTGCTTCCCGG  300

seq1  GTCCCGTCGCCCGCGTGTGGAG  295
      |||||||||||||||| |||||
seq2  GTCCCGTCGCCCGCGTTTGGAG  322