BAC Information

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BAC

Clone NameB6Ng01-041M02
Chromosome17 (Build37)
Map Location 23,775,899 - 23,919,063
singlet/doubletdoublet
Overlap geneMmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik
Upstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062
Downstream geneLOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041M02.bB6Ng01-041M02.g
ACCDH868326DH868327
length625656
definitionDH868326|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M02, 5' end.DH868327|Mus musculus domesticus DNA, BAC clone: B6Ng01-041M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,775,899 - 23,776,523)(23,918,417 - 23,919,063)
sequence
gaattctgtctcaagactgaagcaaaaatctgtctgagttttcattctgc
cttacaaaatttggccataactcccatgagccaattccttagagtaaatc
tctttctggatagcctagaataaacagtgaatgcaaagccagcctgggct
acaataatgagaccaggtctcaaaaaaactcttttaaaaaattccccccc
accatcccccagggtagggtggggaaggcagaggaggctaggaactggag
aggtggcttaatagttagcactggctgctcttccataggatccaggttca
attcccagcacccacatggtaggtcacactcttatgtgataccaattcta
tacccccttatggctttccacagaaccaggcaatgcacatggtacacaga
cacacttacagacaaaacatccatacacataccattaataagtttttttt
taagttgttgcttgtttatttgttggggtgtagactctcactgtgtaacc
ctgactgggctcactatgtagaccaggctaaccagccacctgactctgtc
tcctgagtgctgggactaaagctatctattaccatgctgagctctgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgt
gaattcttttggcccagcctggtctcttttaacccatcccagccttgaac
tctgtaggtggccaagggtgaccttgaactcctaaacctctgcctctact
tctgttgagatcataggtacctgctaccattggtgttgggactcaaatcc
atggctttgtgcatgctagacaggcactctccaatgatatccccagccct
ggagtccatgaggaagacttgggccttctccaatgcttgttcagttattt
gtatcatatcgggcttgtgaatatccattttattcttagggttgtaatcc
tgactacttaattaaggtaggaccccactctggagcagttttcttcatag
ctgacttttcttattggaattggcttttggccagtgagcctggttccagt
cctgattctcaccagctgtgtggtactgggccactacattaagtgcccaa
ggtcacctccctgagggcaggcagatcgggatgatggtaattcattcctt
cctctctttctttctatctttctctctttctttctttatttctttctttc
tttctttctttctttctttcgttctttctttctgttcttttctttctgtc
tttctttctttctttctttctttctttctttctttctttttctttctctc
tttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23775899_23776523
seq2: B6Ng01-041M02.b_43_667

seq1  GAATTCTGTCTCAAGACTGAAGCAAAAATCTGTCTGAGTTTTCATTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTCAAGACTGAAGCAAAAATCTGTCTGAGTTTTCATTCTGC  50

seq1  CTTACAAAATTTGGCCATAACTCCCATGAGCCAATTCCTTAGAGTAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAATTTGGCCATAACTCCCATGAGCCAATTCCTTAGAGTAAATC  100

seq1  TCTTTCTGGATAGCCTAGAATAAACAGTGAATGCAAAGCCAGCCTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGATAGCCTAGAATAAACAGTGAATGCAAAGCCAGCCTGGGCT  150

seq1  ACAATAATGAGACCAGGTCTCAAAAAAACTCTTTTAAAAAATTCCCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATGAGACCAGGTCTCAAAAAAACTCTTTTAAAAAATTCCCCCCC  200

seq1  ACCATCCCCCAGGGTAGGGTGGGGAAGGCAGAGGAGGCTAGGAACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCCCAGGGTAGGGTGGGGAAGGCAGAGGAGGCTAGGAACTGGAG  250

seq1  AGGTGGCTTAATAGTTAGCACTGGCTGCTCTTCCATAGGATCCAGGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTTAATAGTTAGCACTGGCTGCTCTTCCATAGGATCCAGGTTCA  300

seq1  ATTCCCAGCACCCACATGGTAGGTCACACTCTTATGTGATACCAATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGCACCCACATGGTAGGTCACACTCTTATGTGATACCAATTCTA  350

seq1  TACCCCCTTATGGCTTTCCACAGAACCAGGCAATGCACATGGTACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTTATGGCTTTCCACAGAACCAGGCAATGCACATGGTACACAGA  400

seq1  CACACTTACAGACAAAACATCCATACACATACCATTAATAAGTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTACAGACAAAACATCCATACACATACCATTAATAAGTTTTTTTT  450

seq1  TAAGTTGTTGCTTGTTTATTTGTTGGGGTGTAGACTCTCACTGTGTAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTGCTTGTTTATTTGTTGGGGTGTAGACTCTCACTGTGTAACC  500

seq1  CTGACTGGGCTCACTATGTAGACCAGGCTAACCAGCCACCTGACTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGGCTCACTATGTAGACCAGGCTAACCAGCCACCTGACTCTGTC  550

seq1  TCCTGAGTGCTGGGACTAAAGCTATCTATTACCATGCTGAGCTCTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGCTGGGACTAAAGCTATCTATTACCATGCTGAGCTCTGTGTG  600

seq1  TGTGTGTGTGTGTGTGTGTGTGTGT  625
      |||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGT  625

seq1: chr17_23918417_23919063
seq2: B6Ng01-041M02.g_71_725 (reverse)

seq1  TTAAAGAGAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGAGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  50

seq1  AGAA----AGAAAGAAAAGA----AAAGAAAGAAAGAAAGAAAGAAAGAA  92
      ||||    ||||||||||||    |||||||||| |||||||||||||||
seq2  AGAAAGACAGAAAGAAAAGAACAGAAAGAAAGAACGAAAGAAAGAAAGAA  100

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAG  142
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  AGAAAGAAAGAAAGAAATAAAGAAAGAAAGAGAGAAAGATAGAAAGAAAG  150

seq1  AGAGGAAGGAATGAATTACCATCATCCCGATCTGCCTGCCCTCAGGGAGG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGGAATGAATTACCATCATCCCGATCTGCCTGCCCTCAGGGAGG  200

seq1  TGACCTTGGGCACTTAATGTAGTGGCCCAGTACCACACAGCTGGTGAGAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGGGCACTTAATGTAGTGGCCCAGTACCACACAGCTGGTGAGAA  250

seq1  TCAGGACTGGAACCAGGCTCACTGGCCAAAAGCCAATTCCAATAAGAAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGAACCAGGCTCACTGGCCAAAAGCCAATTCCAATAAGAAAA  300

seq1  GTCAGCTATGAAGAAAACTGCTCCAGAGTGGGGTCCTACCTTAATTAAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTATGAAGAAAACTGCTCCAGAGTGGGGTCCTACCTTAATTAAGT  350

seq1  AGTCAGGATTACAACCCTAAGAATAAAATGGATATTCACAAGCCCGATAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGATTACAACCCTAAGAATAAAATGGATATTCACAAGCCCGATAT  400

seq1  GATACAAATAACTGAACAAGCATTGGAGAAGGCCCAAGTCTTCCTCATGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAATAACTGAACAAGCATTGGAGAAGGCCCAAGTCTTCCTCATGG  450

seq1  ACTCCAGGGCTGGGGATATCATTGGAGAGTGCCTGTCTAGCATGCACAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGGCTGGGGATATCATTGGAGAGTGCCTGTCTAGCATGCACAAA  500

seq1  GCCATGGATTTGAGTCCCAACACCAATGGTAGCAGGTACCTATGATCTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGATTTGAGTCCCAACACCAATGGTAGCAGGTACCTATGATCTCA  550

seq1  ACAGAAGTAGAGGCAGAGGTTTAGGAGTTCAAGGTCACCCTTGGCCACCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTAGAGGCAGAGGTTTAGGAGTTCAAGGTCACCCTTGGCCACCT  600

seq1  ACAGAGTTCAAGGCTGGGATGGGTTAAAAGAGACCAGGCTGGGCCAAAAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTTCAAGGCTGGGATGGGTTAAAAGAGACCAGGCTGGGCCAAAAG  650

seq1  AATTC  647
      |||||
seq2  AATTC  655