BAC Information

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BAC

Clone NameB6Ng01-041O11
Chromosome17 (Build37)
Map Location 44,088,900 - 44,202,404
singlet/doubletdoublet
Overlap geneDscr1l1
Upstream geneTnfrsf21, LOC100043770, Gpr110, Gpr116, Mep1a, LOC100043332, Pla2g7, Tdrd6, Slc25a27, Cyp39a1
Downstream geneEnpp5, Enpp4, Clic5, Runx2, Supt3h, 4930564C03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041O11.bB6Ng01-041O11.g
ACCDH868429DH868430
length1,079903
definitionDH868429|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O11, 5' end.DH868430|Mus musculus domesticus DNA, BAC clone: B6Ng01-041O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,201,324 - 44,202,404)(44,088,900 - 44,089,806)
sequence
ggaattcatatgagtctatactatctataaacagtgactgtaaataaaag
tttatttttacatgctgacttttgtcttgttttaattaataaataatcat
agctatcaaagcttttagtaattttagttttactaaaagttaaatatatg
aaattagttttaggaatagaataccacataagaaaaagaagtgagaagaa
aactggcatggacataccaataggctaagcacagaagatgagacaagaag
acagctaacttcaggctaacctgggccatgtttctatgtaacaagagcta
ctcaaaatataatgcctgctcctagcaagctttgctagtatccccagaaa
taattttttaaaaaaggcagagaatgaatggaacataatcaaagaccaaa
tcaaccttgctgcttaaaacatgtcccaaactcaactcacccatcctgtg
gcttgtccatgtttatagttttttttctttcacagacagcctctgttcag
tgtaaacacaccagtgatcaaacgaaccctgttaagatgcaaacacagag
aaagccaagttccgcagccgagagtctaaagaggcagtcagaagatttaa
cagtctagaatagcattttttattggaacacaggtatggatttcattcca
tctggagaccattcaagcatagaccattagcctgcggtgccttgaagcag
aaagaaactataaaacttttatcataatagttcttgagaaagttgaagag
gagtatcttgggggctgtcagggatataattctagaaaatggaggtgaag
ttgaaataaaacgtaagacaaaagaagttgccatatgagatgctagaccc
tggctctttccagctctgcctcttccctactgtatcctcactgccaccag
tggcatcttagaatgcttcatcttatgtgtgccttatttttaaatcacac
tagcctaactaggccaaaataatggagagaagttatatgaaggaaagtac
taaaccccatggaccgagatgatcatctttggcttactgttttttgggag
cacaaaagaaatagagttaaaagggatgg
gaattctggcattcagaggtaatccaatatagtccaatcacaaaatgtaa
aatgccacatccacctctctcatctgtgggtaaaattgggatattttatc
taatcatgtactggaaaagcaccaatatgttctaaaccatgatgctctgc
tggccactggaaaggcagctgcctttctatttgggataaatcctgtgggg
tgttgatgtattctcttgagaactgtgtgattaatggtgcagattaaacc
cgtcttagatttttttcctttacacactcctactgtgaagaagacaaaag
gctattcccacttgattgatttagtcattacacatgtaacgtcctctgtg
ccaggcactcggcaaagcacaagatagccacagccctgcccttcagggat
tcacaatcaggacaaagagacagcaacgggaagtgtctcttcaaagtctc
aggcaaaacagagccaggaggctgtgacaatgacccacatgagtgaattt
gcctattagaccctgccatctgtccctgggtgtcacacctactgcaaccc
ctttccactgactgccttcagtccgaatgaccttggaggcagcccggaat
gctgagctgaggagggttgcttttcagttcctcatctgcacttactgttc
ttcaaatagaatttgcacaaacctctaattttcccctcttccccagcagc
ctaactcaatgactgacgaccagttctttactccctccaataatggattt
ctcttcagctcatatctggcatgcattcgtggtgcccagaacatgtgagg
ctgtgctgggtggcatggagcaaataaacagagcccggagaaagctgcaa
aataccccaactcctgcttactgtccaggcagaaactgtcgaatcttaac
cta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44201324_44202404
seq2: B6Ng01-041O11.b_44_1121 (reverse)

seq1  CCATCCCTTTAAACTCTATTCTTTTTGTGCTCCACAAAAACAGTAAGCC-  49
      |||||||||| |||||||||  |||||||||||  |||||||||||||| 
seq2  CCATCCCTTTTAACTCTATTTCTTTTGTGCTCCCAAAAAACAGTAAGCCA  50

seq1  AAGATGATCATTCTCGGTTCCATGGGGTTCTAGTAACTTTCCTTCATATA  99
      |||||||||| |||||| ||||||||||| |||| |||||||||||||||
seq2  AAGATGATCA-TCTCGG-TCCATGGGGTT-TAGT-ACTTTCCTTCATATA  96

seq1  ACTTCTCTCCATTATTTTGGCCTAGTTAGGCTAGTGTGATTTAAAAATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTCCATTATTTTGGCCTAGTTAGGCTAGTGTGATTTAAAAATAA  146

seq1  GGCACACATAAAGATGAAGCATTCTAAGATGCCACTGGTGGCAGTGAGGA  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAT-AAGATGAAGCATTCTAAGATGCCACTGGTGGCAGTGAGGA  195

seq1  TACAGTAGGGAAGAGGCAGAGCTGGAAAGAGCCAGGGTCTAGCATCTCAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGGGAAGAGGCAGAGCTGGAAAGAGCCAGGGTCTAGCATCTCAT  245

seq1  ATGGCAACTTCTTTTGTCTTACGTTTTATTTCAACTTCACCTCCATTTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACTTCTTTTGTCTTACGTTTTATTTCAACTTCACCTCCATTTTC  295

seq1  TAGAATTATATCCCTGACAGCCCCCAAGATACTCCTCTTCAACTTTCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTATATCCCTGACAGCCCCCAAGATACTCCTCTTCAACTTTCTCA  345

seq1  AGAACTATTATGAT-AAAGTTTTATAGTTTCTTTCTGCTTCAAGGCACCG  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAACTATTATGATAAAAGTTTTATAGTTTCTTTCTGCTTCAAGGCACCG  395

seq1  CAGGCTAATGGTCTATGCTTGAATGGTCTCCAGATGGAATGAAATCCATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAATGGTCTATGCTTGAATGGTCTCCAGATGGAATGAAATCCATA  445

seq1  CCTGTGTTCCAATAAAAAATGCTATTCTAGACTGTTAAATCTTCTGACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTCCAATAAAAAATGCTATTCTAGACTGTTAAATCTTCTGACTG  495

seq1  CCTCTTTAGACTCTCGGCTGCGGAACTTGGCTTTCTCTGTGTTTGCATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTAGACTCTCGGCTGCGGAACTTGGCTTTCTCTGTGTTTGCATCT  545

seq1  TAACAGGGTTCGTTTGATCACTGGTGTGTTTACACTGAACAGAGGCTGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGGTTCGTTTGATCACTGGTGTGTTTACACTGAACAGAGGCTGTC  595

seq1  TGTGAAAGAAAAAAAACTATAAACATGGACAAGCCACAGGATGGGTGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAAAAAAAACTATAAACATGGACAAGCCACAGGATGGGTGAGT  645

seq1  TGAGTTTGGGACATGTTTTAAGCAGCAAGGTTGATTTGGTCTTTGATTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGGACATGTTTTAAGCAGCAAGGTTGATTTGGTCTTTGATTAT  695

seq1  GTTCCATTCATTCTCTGCCTTTTTTAAAAAATTATTTCTGGGGATACTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTCATTCTCTGCCTTTTTTAAAAAATTATTTCTGGGGATACTAG  745

seq1  CAAAGCTTGCTAGGAGCAGGCATTATATTTTGAGTAGCTCTTGTTACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGCTAGGAGCAGGCATTATATTTTGAGTAGCTCTTGTTACATA  795

seq1  GAAACATGGCCCAGGTTAGCCTGAAGTTAGCTGTCTTCTTGTCTCATCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGGCCCAGGTTAGCCTGAAGTTAGCTGTCTTCTTGTCTCATCTT  845

seq1  CTGTGCTTAGCCTATTGGTATGTCCATGCCAGTTTTCTTCTCACTTCTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTAGCCTATTGGTATGTCCATGCCAGTTTTCTTCTCACTTCTTT  895

seq1  TTCTTATGTGGTATTCTATTCCTAAAACTAATTTCATATATTTAACTTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATGTGGTATTCTATTCCTAAAACTAATTTCATATATTTAACTTTT  945

seq1  AGTAAAACTAAAATTACTAAAAGCTTTGATAGCTATGATTATTTATTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAACTAAAATTACTAAAAGCTTTGATAGCTATGATTATTTATTAAT  995

seq1  TAAAACAAGACAAAAGTCAGCATGTAAAAATAAACTTTTATTTACAGTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAGACAAAAGTCAGCATGTAAAAATAAACTTTTATTTACAGTCA  1045

seq1  CTGTTTATAGATAGTATAGACTCATATGAATTC  1081
      |||||||||||||||||||||||||||||||||
seq2  CTGTTTATAGATAGTATAGACTCATATGAATTC  1078

seq1: chr17_44088900_44089806
seq2: B6Ng01-041O11.g_71_973

seq1  GAATTCTGGCATTCAGAGGTAATCCAATATAGTCCAATCACAAAATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCATTCAGAGGTAATCCAATATAGTCCAATCACAAAATGTAA  50

seq1  AATGCCACATCCACCTCTCTCATCTGTGGGTAAAATTGGGATATTTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACATCCACCTCTCTCATCTGTGGGTAAAATTGGGATATTTTATC  100

seq1  TAATCATGTACTGGAAAAGCACCAATATGTTCTAAACCATGATGCTCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGTACTGGAAAAGCACCAATATGTTCTAAACCATGATGCTCTGC  150

seq1  TGGCCACTGGAAAGGCAGCTGCCTTTCTATTTGGGATAAATCCTGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTGGAAAGGCAGCTGCCTTTCTATTTGGGATAAATCCTGTGGGG  200

seq1  TGTTGATGTATTCTCTTGAGAACTGTGTGATTAATGGTGCAGATTAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATGTATTCTCTTGAGAACTGTGTGATTAATGGTGCAGATTAAACC  250

seq1  CGTCTTAGATTTTTTTCCTTTACACACTCCTACTGTGAAGAAGACAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTAGATTTTTTTCCTTTACACACTCCTACTGTGAAGAAGACAAAAG  300

seq1  GCTATTCCCACTTGATTGATTTAGTCATTACACATGTAACGTCCTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCCACTTGATTGATTTAGTCATTACACATGTAACGTCCTCTGTG  350

seq1  CCAGGCACTCGGCAAAGCACAAGATAGCCACAGCCCTGCCCTTCAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTCGGCAAAGCACAAGATAGCCACAGCCCTGCCCTTCAGGGAT  400

seq1  TCACAATCAGGACAAAGAGACAGCAACGGGAAGTGTCTCTTCAAAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCAGGACAAAGAGACAGCAACGGGAAGTGTCTCTTCAAAGTCTC  450

seq1  AGGCAAAACAGAGCCAGGAGGCTGTGACAATGACCCACATGAGTGAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAACAGAGCCAGGAGGCTGTGACAATGACCCACATGAGTGAATTT  500

seq1  GCCTATTAGACCCTGCCATCTGTCCCTGGGTGTCACACCTACTGCAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTAGACCCTGCCATCTGTCCCTGGGTGTCACACCTACTGCAACCC  550

seq1  CTTTCCACTGACTGCCTTCAGTCCGAATGACCTTGGAGGCAGCCCGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACTGACTGCCTTCAGTCCGAATGACCTTGGAGGCAGCCCGGAAT  600

seq1  GCTGAGCTGAGGAGGGTTGCTTTTCAGTTCCTCATCTGCACTTACTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCTGAGGAGGGTTGCTTTTCAGTTCCTCATCTGCACTTACTGTTC  650

seq1  TTCAAATAGAATTTGCACAAACCTCTAATTTTCCCCTCTTCCCCAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAGAATTTGCACAAACCTCTAATTTTCCCCTCTTCCCCAGCAGC  700

seq1  CTAACTCAATGACTGACGACCAGTTCTTTACTCCCTCCAATAATGGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAATGACTGACGACCAGTTCTTTACTCCCTCCAATAATGGATTT  750

seq1  CTCTTCAGCTCATATCTGGCATGCATTCGTGGTGCCCAGAACATGTGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGCTCATATCTGGCATGCATTCGTGGTGCCCAGAACATGTGAGG  800

seq1  CTGTGCTGGGTGGCATGGAGCAAATTAACAGAGCCCGGAGAAAGCTGCAA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTGCTGGGTGGCATGGAGCAAATAAACAGAGCCCGGAGAAAGCTGCAA  850

seq1  AATAACCCCAACTTCCTGCTTACTGTCCCAGGCAGAAAACTGTCGAATCT  900
      ||| |||||||| ||||||||||||| |||||||| ||||||||||||||
seq2  AAT-ACCCCAAC-TCCTGCTTACTGT-CCAGGCAG-AAACTGTCGAATCT  896

seq1  CAACCTA  907
       ||||||
seq2  TAACCTA  903