BAC Information

Click to search

BAC

Clone NameB6Ng01-042C22
Chromosome17 (Build37)8 (Build37)
Map Location 46,270,968 - 46,271,21691,442,127 - 91,442,790
singlet/doubletsingletsinglet
Overlap gene1700027N10Rik
Upstream geneEG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a
Downstream geneMad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C22.bB6Ng01-042C22.g
ACCDH868631DH868632
length543665
definitionDH868631|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C22, 5' end.DH868632|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(46,270,968 - 46,271,216)(91,442,127 - 91,442,790)
sequence
gaattcctggccttcattctgtaagccaatctaatacacacacacataca
cacacacacacacacacacacacacacacacgtacatacatgtgcatata
tatatatatacttatacatattagctatacatatagatatattaatatgt
gtgtatttgtaagtgtatatacttatatgtattagctatacatatagata
tattgatatatgtgtttttaagtgtgtatatacttatatgtattagctat
acatatagatatattgatatgtctatatacacatacatgtatgatatgtg
tgcatggatatgtgtatttgtgtgtgtgtatatatatatatatatatacg
tatatgtgtgtgtgggggtgtgtgagtgagtgtgtgtgtgtgtgtgggtg
tatatgtgataagatagctgtatgtagcgcatatatatgtgtgtatacac
acactaaaacacatatatatatatatatatatgtgtatctcatatatata
tgtatatacacacacacaaacacacatatatatatatatatat
gaattctctgtgatcgctatgtgacaaacgatgtttgatggtacaaagat
ggtacacatttcctccaccacctgggccacgctccccaccccagtcatgc
caggcatgcttgctgtgacttaatcgaccttccctccctaaaatctcagt
gggccctgtaccttctccggctattttattcctggcgtctctcaaggtgc
ccgtctcaagctaagtaatcggcgagtgtttgtgcacggtgtaaactggc
tctccagagggctttgggcatttgaacttttattgttcttggcttggccc
aagttttagtatgcattcagggtttaatgacagcaaagagcatgagctat
cagctgatcgcagaagcaagcctcagtatttctgtctggtaaatggggag
agttctacttaaattttacttcccagagttactggggagccagataacaa
atgtggatagtgcatagacaaggcagaaggtgggaatgtgttcactcggc
tcgctgcagcagccaaccgtgtgcaaactccggcacactttctgtctggc
accattaagaacacactggcacctgcacatagccacacacctgaatacac
accttaggaggagagtgtggacattcctactttcccttttgatcacttag
tgggggggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46270968_46271216
seq2: B6Ng01-042C22.b_79_581

seq1  --ACACACACATATACACACACACACACACACACACACACACACAC--AT  46
        ||||||||||| ||||||||||||||||||||||||||||||||  | 
seq2  ACACACACACATACACACACACACACACACACACACACACACACACGTAC  50

seq1  ATACA----CATATATATATATACACACACACA-------CACACATATA  85
      |||||    |||||||||||||| ||  | |||        | |||||||
seq2  ATACATGTGCATATATATATATATACTTATACATATTAGCTATACATATA  100

seq1  CACA--------------------------CACACAC-------------  96
       | |                           | | ||             
seq2  GATATATTAATATGTGTGTATTTGTAAGTGTATATACTTATATGTATTAG  150

seq1  --ACACACACACACACA---------------------------------  111
        | ||| | | | | |                                 
seq2  CTATACATATAGATATATTGATATATGTGTTTTTAAGTGTGTATATACTT  200

seq1  ------------CACACATATACACACA----------CACACACACACA  139
                   | ||||||| | | |           | | ||||| |
seq2  ATATGTATTAGCTATACATATAGATATATTGATATGTCTATATACACATA  250

seq1  CA---------------CA------------------------CACACAC  150
      ||               ||                         | | | 
seq2  CATGTATGATATGTGTGCATGGATATGTGTATTTGTGTGTGTGTATATAT  300

seq1  ACATATATATATA-------------------------------------  163
      | |||||||||||                                     
seq2  ATATATATATATACGTATATGTGTGTGTGGGGGTGTGTGAGTGAGTGTGT  350

seq1  --------------------------------------------------  163
                                                        
seq2  GTGTGTGTGTGGGTGTATATGTGATAAGATAGCTGTATGTAGCGCATATA  400

seq1  --------TATACACACACACACACACATATACACACACACACATAT---  202
              |||||||||||  | ||||||||| | | | | | ||||   
seq2  TATGTGTGTATACACACACTAAAACACATATATATATATATATATATGTG  450

seq1  ------ATATATATATACACACACACACACACACACACACATATATATAT  246
            ||||||||||  | | ||||||||||| ||||||||||||||||
seq2  TATCTCATATATATATGTATATACACACACACAAACACACATATATATAT  500

seq1  ATA  249
      |||
seq2  ATA  503

seq1: chr8_91442127_91442790
seq2: B6Ng01-042C22.g_66_730 (reverse)

seq1  -ACCCCCCCCCCCCACTAAGTGATCAAAAGGGAAAGTAGGAATGTCCACA  49
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCCCCCACTAAGTGATCAAAAGGGAAAGTAGGAATGTCCACA  50

seq1  CTCTCCTCCTAAGGTGTGTATTCAGGTGTGTGGCTATGTGCAGGTGCCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCCTAAGGTGTGTATTCAGGTGTGTGGCTATGTGCAGGTGCCAG  100

seq1  TGTGTTCTTAATGGTGCCAGACAGAAAGTGTGCCGGAGTTTGCACACGGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTAATGGTGCCAGACAGAAAGTGTGCCGGAGTTTGCACACGGT  150

seq1  TGGCTGCTGCAGCGAGCCGAGTGAACACATTCCCACCTTCTGCCTTGTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGCAGCGAGCCGAGTGAACACATTCCCACCTTCTGCCTTGTCT  200

seq1  ATGCACTATCCACATTTGTTATCTGGCTCCCCAGTAACTCTGGGAAGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTATCCACATTTGTTATCTGGCTCCCCAGTAACTCTGGGAAGTAA  250

seq1  AATTTAAGTAGAACTCTCCCCATTTACCAGACAGAAATACTGAGGCTTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGTAGAACTCTCCCCATTTACCAGACAGAAATACTGAGGCTTGC  300

seq1  TTCTGCGATCAGCTGATAGCTCATGCTCTTTGCTGTCATTAAACCCTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGATCAGCTGATAGCTCATGCTCTTTGCTGTCATTAAACCCTGAA  350

seq1  TGCATACTAAAACTTGGGCCAAGCCAAGAACAATAAAAGTTCAAATGCCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACTAAAACTTGGGCCAAGCCAAGAACAATAAAAGTTCAAATGCCC  400

seq1  AAAGCCCTCTGGAGAGCCAGTTTACACCGTGCACAAACACTCGCCGATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCTCTGGAGAGCCAGTTTACACCGTGCACAAACACTCGCCGATTA  450

seq1  CTTAGCTTGAGACGGGCACCTTGAGAGACGCCAGGAATAAAATAGCCGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTTGAGACGGGCACCTTGAGAGACGCCAGGAATAAAATAGCCGGA  500

seq1  GAAGGTACAGGGCCCACTGAGATTTTAGGGAGGGAAGGTCGATTAAGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTACAGGGCCCACTGAGATTTTAGGGAGGGAAGGTCGATTAAGTCA  550

seq1  CAGCAAGCATGCCTGGCATGACTGGGGTGGGGAGCGTGGCCCAGGTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCATGCCTGGCATGACTGGGGTGGGGAGCGTGGCCCAGGTGGTG  600

seq1  GAGGAAATGTGTACCATCTTTGTACCATCAAACATCGTTTGTCACATAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGTGTACCATCTTTGTACCATCAAACATCGTTTGTCACATAGC  650

seq1  GATCACAGAGAATTC  664
      |||||||||||||||
seq2  GATCACAGAGAATTC  665