BAC Information

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BAC

Clone NameB6Ng01-042H01
Chromosome17 (Build37)
Map Location 58,344,715 - 58,345,826
singlet/doubletsinglet
Overlap geneCntnap5c
Upstream geneC3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042H01.bB6Ng01-042H01.g
ACCDH868819DH868820
length1,1431,105
definitionDH868819|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H01, 5' end.DH868820|Mus musculus domesticus DNA, BAC clone: B6Ng01-042H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgtgtgttcattaccgtttcagcattgacatttacaatacaag
atcagactcttcaaggaaagggcaaacaagtcaataccagtgccaccggt
caggacaagaaatgccaagaagaaagactaaaagacaacagcattgtggg
agcttaggaacaatttctgtcttaaaatgctgcatggttccccactttat
acgcctgataccccaccatccagtaaggtattatcatcatccctgagtca
tacatctggaaactgaagcatgtagaggttgtattagttactttctttgt
tgatgttatgaaaaagtttaaggaaaaaagggttgcttacagcttgacag
tacagactatcatagcaaggaaattatggatgaaggactgtgaatgagct
gggcacatttcttggaagagagagtgttgggagaagtgcagatgagagat
gtctgacttgtaaaattccaaagggaaatttgagagacatttaacaagtc
tatcagagctattgcatgttttaaactaaaaaaaaaaaatcatgggtaga
tatgtggggctgaaaaattgcttgattaacaagatatagaaactactaaa
cctttggtttgtagggacaaccatgttgctcagctggggatgagaaattg
gtggtgtattaagaagaaactcatattatgaaggaacaatcttctgggaa
gtgtttccttaagatcagcacagagaagtcatgttccagaggcaagcaag
gctgtactccatgctggaagccaaatttggtagtgtaagttttattgact
tggttttgaaggctttattgggtcatagaaatcttctgaggcttgacatt
gggggagagaaatagcatccctaaagctagcccaggaaaggtcattggtg
gcaatgcagcccaattacagcagaagacctgagggttttgaaaatgtatg
acatgaaaaccatttgtcaagactacagcagacatggagtacagtggccc
tgagcctagagacagctgagtgagttgcatagagtacagccagaaagtat
caggtctttgaagactcagaaaatccatactgatccagtaactagaacat
gagtatagtggggtgtgaaatagcttggcctaaagagacctca
gaattcctgggagttattcaagtattgtacttctcagcttcaagtgggct
gagtatgaatcccatagctattctttagatctgtctccaagctctaaaat
actggattatcttcattcagcaatagtgacagtagagggaagacaggaga
gaataggccatagggtgcatagctgtgtttctttcattcaattggtgact
gaaccatgagacttcatgtttcataactattcctctgctatttacctcca
gatctacctgtagctggcaatccatatggtatgccctctatctctgtcac
taaagctgtgtcctggaaactatggtgcagtggtccacaggaaatatacc
ctgtaactcccatggaaaagatgccctgtaactcattcattttccaagtc
tctttgctacttcttggcacagtttttatgtaaagataaagcattgctgc
agaaaagtttttcagatcatggaagtatccagccttaaatcctcagcagc
tccttttgcggagagaagcagcagccatttgtctctagattagcatacag
ccttccctagctaagcttgagacacttttcacacatcacaccttgcagaa
attctgcctctggacaggaatccagcagctagtaaatgatgagtacagga
aatgaagtatcactcagttcttgcaatgtttacattcaaaagacggagca
atcaatgctgaagctatggcctccttgatgaatcaatagcctggtcaact
cccttcctacatcagtgactttactcctcatcatagcaaaagcatctggg
agaaagaccttcactgaggaagggttttttttgctcctgggtgcaggcaa
tttaggctatcaaggcaggaaggtaagaagcagcttagttttatagggaa
ggagcttgaaactggtcaaatggaagcatcaggtaaaaccagaagggctt
aagccagactagtaccaggaatgtatgcttccatacctaagtcacagcaa
accactcctccaggagttcactgtcctcaatattctacactcccatatag
gctggtgcatgatcggggcactagggacaaggactggagtgaatgctatg
ttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58344715_58345826
seq2: B6Ng01-042H01.g_66_1170

seq1  GAATTCCTGGGAGTTATTCAAGTATTGTACTTCTCAGCTTCAAGTGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAGTTATTCAAGTATTGTACTTCTCAGCTTCAAGTGGGCT  50

seq1  GAGTATGAATCCCATAGCTATTCTTTAGATCTGTCTCCAAGCTCTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGAATCCCATAGCTATTCTTTAGATCTGTCTCCAAGCTCTAAAAT  100

seq1  ACTGGATTATCTTCATTCAGCAATAGTGACAGTAGAGGGAAGACAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTATCTTCATTCAGCAATAGTGACAGTAGAGGGAAGACAGGAGA  150

seq1  GAATAGGCCATAGGGTGCATAGCTGTGTTTCTTTCATTCAATTGGTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGCCATAGGGTGCATAGCTGTGTTTCTTTCATTCAATTGGTGACT  200

seq1  GAACCATGAGACTTCATGTTTCATAACTATTCCTCTGCTATTTACCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGAGACTTCATGTTTCATAACTATTCCTCTGCTATTTACCTCCA  250

seq1  GATCTACCTGTAGCTGGCAATCCATATGGTATGCCCTCTATCTCTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCTGTAGCTGGCAATCCATATGGTATGCCCTCTATCTCTGTCAC  300

seq1  TAAAGCTGTGTCCTGGAAACTATGGTGCAGTGGTCCACAGGAAATATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTGTCCTGGAAACTATGGTGCAGTGGTCCACAGGAAATATACC  350

seq1  CTGTAACTCCCATGGAAAAGATGCCCTGTAACTCATTCATTTTCCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCCCATGGAAAAGATGCCCTGTAACTCATTCATTTTCCAAGTC  400

seq1  TCTTTGCTACTTCTTGGCACAGTTTTTATGTAAAGATAAAGCATTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCTACTTCTTGGCACAGTTTTTATGTAAAGATAAAGCATTGCTGC  450

seq1  AGAAAAGTTTTTCAGATCATGGAAGTATCCAGCCTTAAATCCTCAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTTTTCAGATCATGGAAGTATCCAGCCTTAAATCCTCAGCAGC  500

seq1  TCCTTTTGCGGAGAGAAGCAGCAGCCATTTGTCTCTAGATTAGCATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCGGAGAGAAGCAGCAGCCATTTGTCTCTAGATTAGCATACAG  550

seq1  CCTTCCCTAGCTAAGCTTGAGACACTTTTCACACATCACACCTTGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTAGCTAAGCTTGAGACACTTTTCACACATCACACCTTGCAGAA  600

seq1  ATTCTGCCTCTGGACAGGAATCCAGCAGCTAGTAAATGATGAGTACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTCTGGACAGGAATCCAGCAGCTAGTAAATGATGAGTACAGGA  650

seq1  AATGAAGTATCACTCAGTTCTTGCAATGTTTACATTCAAAAGACGGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTATCACTCAGTTCTTGCAATGTTTACATTCAAAAGACGGAGCA  700

seq1  ATCAATGCTGAAGCTATGGCCTCCTTGATGAATCAATAGCCTGGTCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGCTGAAGCTATGGCCTCCTTGATGAATCAATAGCCTGGTCAACT  750

seq1  CCCTTCCTACATCAGTGACTTTACTCCTCATCATAGCAAAAGCATCTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTACATCAGTGACTTTACTCCTCATCATAGCAAAAGCATCTGGG  800

seq1  AGAAAGACCTTCACTGAGGAAGGGTTTATTTTGCTCCTGGGTGCAGGCAA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGAAAGACCTTCACTGAGGAAGGGTTTTTTTTGCTCCTGGGTGCAGGCAA  850

seq1  TATAGGCTATCAAGGCAGGAAAGGTAAGAAGCAGCTTAG-TTTATAGGGA  899
      | ||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TTTAGGCTATCAAGGCAGG-AAGGTAAGAAGCAGCTTAGTTTTATAGGGA  899

seq1  AGAAGCTTGAAACTGGTCAAATGGAAGCATCAGGTAAAAACCAGAAAGGG  949
      || |||||||||||||||||||||||||||||||| |||||||| |||||
seq2  AGGAGCTTGAAACTGGTCAAATGGAAGCATCAGGT-AAAACCAG-AAGGG  947

seq1  CTTAAGCCAGAACTAGTACCAGGATATGTATGCTTCCATACCTAAGTCAC  999
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTTAAGCCAG-ACTAGTACCAGGA-ATGTATGCTTCCATACCTAAGTCAC  995

seq1  AGCAAACCACTCCTTCCAGGAGTTCACTGTCCTCAATATTCTACAACCTC  1049
      ||||||||||||| |||||||||||||||||||||||||||||||  |||
seq2  AGCAAACCACTCC-TCCAGGAGTTCACTGTCCTCAATATTCTACA--CTC  1042

seq1  CCACATAAAGCT-GTGCATGATCCGGGGCACTAGGGACAA-GACTGGAGT  1097
      ||| || | ||| ||||||||| ||||||||||||||||| |||||||||
seq2  CCATAT-AGGCTGGTGCATGAT-CGGGGCACTAGGGACAAGGACTGGAGT  1090

seq1  GTATGCTATGTTTTT  1112
      | |||||||||||||
seq2  GAATGCTATGTTTTT  1105