BAC Information

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BAC

Clone NameB6Ng01-042K14
Chromosome17 (Build37)
Map Location 36,257,840 - 36,258,849
singlet/doubletsinglet
Overlap geneH2-T10
Upstream geneCsnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik
Downstream geneLOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042K14.bB6Ng01-042K14.g
ACCDH868968DH868969
length1,2311,010
definitionDH868968|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K14, 5' end.DH868969|Mus musculus domesticus DNA, BAC clone: B6Ng01-042K14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagcccccgccctgcgtagtgcgtcagca
atgcgcagagaggcaatgcgcagagagatgcgcagagaggcagtgcgcag
agaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaata
caacaggcatttccagtctttgaaggagccgagggtgggcgtgtccacgc
tccggtagaatacttacaaattaaagaactcgccgagtcggtccgtaaat
atggaaccaatgctaattttaccttggtgcagttagagaggctcgccggc
atggcactaactcctgctgactggcaaacggttgtaaaagccgctctccc
tagtatgggcaaatatatggaatggagagctctttggcatgaagctgcac
aagcgcaggcccgagcaaacgcagctgctttgactccagagcagagagat
tggacttttgacttgttaacgggtcagggagcttattctgctgatcaaac
aaactaccattggggagcttatgcccaagtttcctccacggctattaggg
cctggaaggcgctctctcgagcaggtgaaaccactgggcagttaacaaag
ataatccagggacctcaggaatccttctcagattttgtggccagaatgac
agaggcagcagagcgtatttttggagagtcagagcaagctgcgcctctga
tagaacagctaatctatgagcaagccacaaaggagtgccgagcggccata
gccccaagaaagaacaaaggcttacaagactggctcaggtctgtcgagag
cttgggggacctctcagcatgcagtttagcggctgccatccttcatccca
gaccgctcatgggcagaatgatcagaggacattgttttaattgcgaaagc
tggcatttagaaagatgcaagctcagataaacagggggactctccactct
ttgcttaagtgtggcaagtatctataaactgaccagttcgctctgtagga
ttagcagtctccccaactatgtcatcgctattccaacggtcatcggcctg
tccagccctacaaatggaccgtttgtcggac
gaattcctccaaaaagctggctattgccaacatgggccctgggatgtttc
cttctggaggagtcctgtgtcccatgagagggcctgtgcagtctcccctg
gattccacagacagcctctgaacaggtctcaggaagacagagtgaaagga
acagctctttcagctctttctgggcacttccagaaatccctcccaggcaa
tggctctcaggacctcaagaggaaagtagctgggagagtccctaattggc
ttagtttcactttcgaatccccaacctctcttgagtttttctgcctagat
attgatgacttggcactagttctcactctctgtagggtaatttctcctaa
ttacttgattggctaatgacgacgacaagaagccaatcgctgggctaaga
tgaaaaggcgagaaaggaagtcatgacgaaaggaaccccttttaccgcct
tgctctctctgtgaccctcctctccccaggcagggttgagagcaagaagg
tgcaggatgtaggcctgcagaattgtcagacccagtggcggcttctgcca
ctggaagaatttccaacataaaacagatgatcagtttgggacaatcgatt
ctgcgaccagaggtagtgtcatttggttacttttaaaattcagattgtct
ggtgttttccaatcactcgcgactgtaatttgaagttggattctgagata
atacaatcgctgtcgctctagtttataaagctgtccaagatctgcccagt
cccagatgtcctgggtcctcagggctgctgtggtctgcgcccttctcctg
cagctggatgccagaccatcctggactcggatccctttgggtgagtgaga
ccagggagggaaactgtctctactgggaaggctagggatagcaccaccca
gtctctgcaccacccagcaagatcctccagccccctttttcagctgtccc
ggcccgcactcccgctcgagatcgagatcgggatcgagggaggagggagg
tcggggtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36257840_36258849
seq2: B6Ng01-042K14.g_67_1076 (reverse)

seq1  GAGACCCCGACCT-CCTCCT-CCTCGATCCCCGATCTCGATCTCGAGCGG  48
      ||||||||||||| |||||| ||||||| |||||||||||||||||||||
seq2  GAGACCCCGACCTCCCTCCTCCCTCGAT-CCCGATCTCGATCTCGAGCGG  49

seq1  GAGTGCGGGCCGGGACAGCTGAAAAAGGGGGGCTGGAGGATCTTGCTGGG  98
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGTGCGGGCCGGGACAGCTGAAAAA-GGGGGCTGGAGGATCTTGCTGGG  98

seq1  TGGTGCAGAGACTGGGTGGTGCTATCCCTAGCCTTCCCAGTAGAGACAGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCAGAGACTGGGTGGTGCTATCCCTAGCCTTCCCAGTAGAGACAGT  148

seq1  TTCCCTCCCTGGTCTCACTCACCCAAAGGGATCCGAGTCCAGGATGGTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCTGGTCTCACTCACCCAAAGGGATCCGAGTCCAGGATGGTCT  198

seq1  GGCATCCAGCTGCAGGAGAAGGGCGCAGACCACAGCAGCCCTGAGGACCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCAGCTGCAGGAGAAGGGCGCAGACCACAGCAGCCCTGAGGACCC  248

seq1  AGGACATCTGGGACTGGGCAGATCTTGGACAGCTTTATAAACTAGAGCGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCTGGGACTGGGCAGATCTTGGACAGCTTTATAAACTAGAGCGA  298

seq1  CAGCGATTGTATTATCTCAGAATCCAACTTCAAATTACAGTCGCGAGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGATTGTATTATCTCAGAATCCAACTTCAAATTACAGTCGCGAGTGA  348

seq1  TTGGAAAACACCAGACAATCTGAATTTTAAAAGTAACCAAATGACACTAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAACACCAGACAATCTGAATTTTAAAAGTAACCAAATGACACTAC  398

seq1  CTCTGGTCGCAGAATCGATTGTCCCAAACTGATCATCTGTTTTATGTTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCGCAGAATCGATTGTCCCAAACTGATCATCTGTTTTATGTTGG  448

seq1  AAATTCTTCCAGTGGCAGAAGCCGCCACTGGGTCTGACAATTCTGCAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCCAGTGGCAGAAGCCGCCACTGGGTCTGACAATTCTGCAGGC  498

seq1  CTACATCCTGCACCTTCTTGCTCTCAACCCTGCCTGGGGAGAGGAGGGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCTGCACCTTCTTGCTCTCAACCCTGCCTGGGGAGAGGAGGGTC  548

seq1  ACAGAGAGAGCAAGGCGGTAAAAGGGGTTCCTTTCGTCATGACTTCCTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGCAAGGCGGTAAAAGGGGTTCCTTTCGTCATGACTTCCTTT  598

seq1  CTCGCCTTTTCATCTTAGCCCAGCGATTGGCTTCTTGTCGTCGTCATTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTTTTCATCTTAGCCCAGCGATTGGCTTCTTGTCGTCGTCATTAG  648

seq1  CCAATCAAGTAATTAGGAGAAATTACCCTACAGAGAGTGAGAACTAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAGTAATTAGGAGAAATTACCCTACAGAGAGTGAGAACTAGTGC  698

seq1  CAAGTCATCAATATCTAGGCAGAAAAACTCAAGAGAGGTTGGGGATTCGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATCAATATCTAGGCAGAAAAACTCAAGAGAGGTTGGGGATTCGA  748

seq1  AAGTGAAACTAAGCCAATTAGGGACTCTCCCAGCTACTTTCCTCTTGAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAACTAAGCCAATTAGGGACTCTCCCAGCTACTTTCCTCTTGAGG  798

seq1  TCCTGAGAGCCATTGCCTGGGAGGGATTTCTGGAAGTGCCCAGAAAGAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGCCATTGCCTGGGAGGGATTTCTGGAAGTGCCCAGAAAGAGC  848

seq1  TGAAAGAGCTGTTCCTTTCACTCTGTCTTCCTGAGACCTGTTCAGAGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGCTGTTCCTTTCACTCTGTCTTCCTGAGACCTGTTCAGAGGCT  898

seq1  GTCTGTGGAATCCAGGGGAGACTGCACAGGCCCTCTCATGGGACACAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGAATCCAGGGGAGACTGCACAGGCCCTCTCATGGGACACAGGA  948

seq1  CTCCTCCAGAAGGAAACATCCCAGGGCCCATGTTGGCAATAGCCAGCTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAGAAGGAAACATCCCAGGGCCCATGTTGGCAATAGCCAGCTTT  998

seq1  TTGGAGGAATTC  1010
      ||||||||||||
seq2  TTGGAGGAATTC  1010