BAC Information

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BAC

Clone NameB6Ng01-042P05
Chromosome17 (Build37)
Map Location 15,415,701 - 15,416,846
singlet/doubletsinglet
Overlap genenone
Upstream geneSmoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19
Downstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042P05.bB6Ng01-042P05.g
ACCDH869162DH869163
length7411,138
definitionDH869162|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P05, 5' end.DH869163|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagcagtagggtgggcttttctaccctgaaatgtctcccatac
gctaggatcaatgcttatttggaaaaaataaatgaataaaaccaggggca
gatggatgtattaagtgagatcaagaaccaattcacagtttatagactcc
cattatagccagagagagcgatggagagaaataatgcctaacaataaaat
taaaactatttatacttggtattaagttctgtagcaacaattgatagcat
tatgtggaatgcatccttcttaccaaggtggagtcaactcagaaagtaaa
tgaaattagtttagtatctgcaacacagaagttacaatgctctacccaat
gaccaggcctttctttcaaataccaagcacaccttgaagatggtggaaat
ggggaggggaaaactgggacaagaacacttgcaaagcagcaacataagat
aaatagcaagttgtaaggttctataattatgacagaggggtgtgtatcac
agtcactgaatcaggactccaaccaagctggatctgactttcttacagtc
ctaatattccaatcattcaagataataagtctgatgtgaaataatattca
agtcccgtattttggggggcaagggttccgattacgtcggaaacggtgac
aattttttaatggaggttatcaagtgggcaagaaatacttcagcgggctt
caacgttaaaagaccggtttaactctaatgctagcgggttc
gaattcaagaagttaaactccaaaaacatcaatcactaatcgtaatgtaa
ggggttttgagaaatgactttcagaaagaggcagagtctttaatgagccc
ggcataatcaagcaacccctcagaaatgaatgaggctcttctggctgcac
tgggaagagtgaccaggattatagtggagcaacattctgtctgcatctca
ctgcggacttccaagatgatgaagaaagagagaaaccgagaacactttga
gaggactaatctttctctcatgaagctgggaagaaaatcagaatgacatt
agacaacgtctgggcatttacaatggcttctggaagccaacacagttata
tctggtttcagacttatctgtctacagctagccctgtacactgtagacat
gtagactggaccaaaccattggaaacattgttgatctccatacatacctc
tctgtccaacaatactctgggtctgaaactacacctgagttctttcttac
aagacagtttgactgccaccagccccggtcacaactcatggccaaaaagt
ggtgtgattcctgttatgctctgtagctgcaaatacatccgcccagtgtg
aagccttgagtctcttgatggcactagactctgccttgttggcaccctac
tctggctcacactccactggtactctatgctggtaagtttcagagaacac
tgcgctgcacagtgagtttaaaaaggttatgagctacaaatgcacttaga
caatgtggcgccaaacttcaactaccaaagatatggcactgagaatccca
tggaggcagacccaaacttctaatccatagtaaacaagattaacaagtgg
ggatcattctaagtgagaatttgtggggcttttgttatacaaggatagaa
aaattccctttgtcttccatctcctcttctctgcttagattctcatatct
catacctttccagatgtcccagtacaccaccagaatttgctcataaataa
tttattctcttaattgggtcatatgagtttattgtagtttataggctgtt
ctctgcctaagctgttgtctcctagatgcatctgatgttcctacatagat
gcatccagctatatatccctcactttgttcaatgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15415701_15416846
seq2: B6Ng01-042P05.g_69_1206

seq1  GAATTCAAGAAGTTAAACTCCAAAAACATCAATCACTAATCGTAATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGTTAAACTCCAAAAACATCAATCACTAATCGTAATGTAA  50

seq1  GGGGTTTTGAGAAATGACTTTCAGAAAGAGGCAGAGTCTTTAATGAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTGAGAAATGACTTTCAGAAAGAGGCAGAGTCTTTAATGAGCCC  100

seq1  GGCATAATCAAGCAACCCCTCAGAAATGAATGAGGCTCTTCTGGCTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAATCAAGCAACCCCTCAGAAATGAATGAGGCTCTTCTGGCTGCAC  150

seq1  TGGGAAGAGTGACCAGGATTATAGTGGAGCAACATTCTGTCTGCATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGTGACCAGGATTATAGTGGAGCAACATTCTGTCTGCATCTCA  200

seq1  CTGCGGACTTCCAAGATGATGAAGAAAGAGAGAAACCGAGAACACTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGACTTCCAAGATGATGAAGAAAGAGAGAAACCGAGAACACTTTGA  250

seq1  GAGGACTAATCTTTCTCTCATGAAGCTGGGAAGAAAATCAGAATGACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTAATCTTTCTCTCATGAAGCTGGGAAGAAAATCAGAATGACATT  300

seq1  AGACAACGTCTGGGCATTTACAATGGCTTCTGGAAGCCAACACAGTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACGTCTGGGCATTTACAATGGCTTCTGGAAGCCAACACAGTTATA  350

seq1  TCTGGTTTCAGACTTATCTGTCTACAGCTAGCCCTGTACACTGTAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTCAGACTTATCTGTCTACAGCTAGCCCTGTACACTGTAGACAT  400

seq1  GTAGACTGGACCAAACCATTGGAAACATTGTTGATCTCCATACATACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGGACCAAACCATTGGAAACATTGTTGATCTCCATACATACCTC  450

seq1  TCTGTCCAACAATACTCTGGGTCTGAAACTACACCTGAGTTCTTTCTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCAACAATACTCTGGGTCTGAAACTACACCTGAGTTCTTTCTTAC  500

seq1  AAGACAGTTTGACTGCCACCAGCCCCGGTCACAACTCATGGCCAAAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTTTGACTGCCACCAGCCCCGGTCACAACTCATGGCCAAAAAGT  550

seq1  GGTGTGATTCCTGTTATGCTCTGTAGCTGCAAATACATCCGCCCAGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATTCCTGTTATGCTCTGTAGCTGCAAATACATCCGCCCAGTGTG  600

seq1  AAGCCTTGAGTCTCTTGATGGCACTAGACTCTGCCTTGTTGGCACCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGAGTCTCTTGATGGCACTAGACTCTGCCTTGTTGGCACCCTAC  650

seq1  TCTGGCTCACACTCCACTGGTACTCTATGCTGGTAAGTTTCAGAGAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCACACTCCACTGGTACTCTATGCTGGTAAGTTTCAGAGAACAC  700

seq1  TGCGCTGCACAGTGAGTTTAAAAAGGTTATGAGCTACAAATGCACTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTGCACAGTGAGTTTAAAAAGGTTATGAGCTACAAATGCACTTAGA  750

seq1  CAATGTGGCGCCAAACTTCAACTACC-AAGATATGGCACTGAGAATCCCA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAATGTGGCGCCAAACTTCAACTACCAAAGATATGGCACTGAGAATCCCA  800

seq1  TGGAGGCAGACCCAAACTTCTAATCCATAGTAAACAAGATAAACAAGTGG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAGGCAGACCCAAACTTCTAATCCATAGTAAACAAGATTAACAAGTGG  850

seq1  GGATCATTCTAAGTGAGAATTTGTGGGGC-TTTGTTATACAAGGATAGAA  898
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGATCATTCTAAGTGAGAATTTGTGGGGCTTTTGTTATACAAGGATAGAA  900

seq1  AAATTCCCTTTGTCTTCCATCTCCTCTTCTCTGCTTAGATTCTCATATCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCTTTGTCTTCCATCTCCTCTTCTCTGCTTAGATTCTCATATCT  950

seq1  CATACCTTTCCAGATGTCCCAGTACACCACCAGAATTTGCTCATAAAATA  998
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATACCTTTCCAGATGTCCCAGTACACCACCAGAATTTGCTCAT-AAATA  999

seq1  ATTTATTTCTCTGTATTGGGTCATATGAGTTTATTGTCAGGTTTATAGGC  1048
      ||||| ||||||  |||||||||||||||||||||||   ||||||||||
seq2  ATTTA-TTCTCTTAATTGGGTCATATGAGTTTATTGT--AGTTTATAGGC  1046

seq1  TGTTCCTCTGCCTTAAGCTGTTTGTCTCTTGGTTTGCCTCTGTGTTTCTT  1098
      |||| ||||||| ||||||| ||||||| | |  ||| ||||   ||| |
seq2  TGTT-CTCTGCC-TAAGCTG-TTGTCTCCTAG-ATGCATCTGATGTTCCT  1092

seq1  ACTTAGATGCATCTAGGCTATTTATCCCTCACTTTGTCTCCATGTTTT  1146
      || |||||||||| | ||||| ||||||||||||||| || |||||||
seq2  ACATAGATGCATCCA-GCTATATATCCCTCACTTTGT-TCAATGTTTT  1138