BAC Information

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BAC

Clone NameB6Ng01-043J20
Chromosome17 (Build37)
Map Location 28,147,498 - 28,250,794
singlet/doubletdoublet
Overlap geneAnks1, Tcp11, 4930526A20Rik
Upstream geneBak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11
Downstream geneScube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J20.bB6Ng01-043J20.g
ACCDH869623DH869624
length6991,100
definitionDH869623|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J20, 5' end.DH869624|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,250,098 - 28,250,794)(28,147,498 - 28,148,616)
sequence
gaattccttaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtaaaatggggtggtggtctctgttttgttcactgccagaagttcaggt
gtaatagctgtggcttcagcagccttggtaccaaggtaacttcaggctga
aagttgtggggtgagagagttggagctgaggaggagccaggggtaccagg
ccagatatccacctcctggcttctttgtttgttttctgttttgttttgtt
tgagatagggtttctctatgtagccctagttgtcctcgaacttgttctgt
agaccaggctagccctgaactcagcgatccacctgcatctgcctcctgaa
tgctgggattaaagtcatgcgccttcgacactcggctagacttctttcat
aagagaagtaactgtcctgactgagccattgacacctggttggttattgc
ccaggtgattctatggtgattgtcagcctcttccatgactctcgggcata
ccctctgtggtgtccctcctccatcacctgatgttcctaccttgttagtt
aggtcctttgaaaagtgttttctgtcccagtataccagagaactttgccg
ttttccacacatgtcctaagtcaagtggaaacgagatgcggcctaaaggg
gttgcgtgactgcgccccagtcacacagatggtgtagggggggggtggt
gaattcatatgtttgagcctcacttacaaagtgagattgtgctgggggta
gtcctgtgaccggtgtgtgctgtgctggggatcacagcacgtgcagggca
gaagctagagcctgaccaactcctgtctgaggcctgggagggagggagga
aaaggccatgggcagctgcaactgcagcacagtgctggtctagaaggcag
ggcaacgtggacacagtttgggcctctgcaaatctggctctaaggccacc
gttcactacactcacacgttctcaggggcctcgccctttgttatgaagca
ggcccaagtagggacatgtataagtgtctgttacgattcctggtgggccc
aggagtagcagctacatggcagactctgttatcacttgcctggagctttg
gagaaatgactgaacttagactgtcctcagaccttaggaaaggcagcagt
ggtggcaggtgaccctcaggttggtggccaagtgcctggggagtagtgga
gctcaagcccttcacacaactgccttcccccatggctcctcccatcacag
acagaggaggtgtgcatgggccagcctcctggatttaccacatgcctctt
aggaactgtggccagcaaggctggggggttggtggctgagagggtgtcag
ggagcatgctcagttcataggtttggggttacgctgcttactgctgggaa
acagcctttggtgaacttcactgggcaagatgacttcctcacactgcgtg
atgaaggtctacctccaaaagagtgtccatcagcgacaccggccttttcc
tcgtgctccgtgagcgtctcgctaacccaggagtgatggagcttacttcc
taaccagcttcccaaggggggctctgacaccagacttcagggttcctggg
tccttgagtgagtcagagcatgttgtcttgacccctgagagcttcagtat
caaagacgggagccacatgcgcctcccacacagatacctggtgtgggtag
tgtgcatggctggtgggtgtatgcttacgatttaacttttctcacctaga
ctgcacactgtcgatagcttctatgcagggggctttggagctgactctgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28250098_28250794
seq2: B6Ng01-043J20.b_48_746 (reverse)

seq1  ACCA-CCCCACCCTACACCATCTGTGTGACTGGGGCGCAGTCACGCAACC  49
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCCCCCCTACACCATCTGTGTGACTGGGGCGCAGTCACGCAACC  50

seq1  CCTCTAGGCCGCATCTCGTTTCCACTTGACTTAGGACATGTGTGGAAAAC  99
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGCCGCATCTCGTTTCCACTTGACTTAGGACATGTGTGGAAAAC  100

seq1  GGC-AAGTTCTCTGGTATACTGGGACAGAAAACACTTTTCAAAGGACCTA  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTTCTCTGGTATACTGGGACAGAAAACACTTTTCAAAGGACCTA  150

seq1  ACTAACAAGGTAGGAACATCAGGTGATGGAGGAGGGACACCACAGAGGGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAGGTAGGAACATCAGGTGATGGAGGAGGGACACCACAGAGGGT  200

seq1  ATGCCCGAGAGTCATGGAAGAGGCTGACAATCACCATAGAATCACCTGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGAGAGTCATGGAAGAGGCTGACAATCACCATAGAATCACCTGGG  250

seq1  CAATAACCAACCAGGTGTCAATGGCTCAGTCAGGACAGTTACTTCTCTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACCAACCAGGTGTCAATGGCTCAGTCAGGACAGTTACTTCTCTTA  300

seq1  TGAAAGAAGTCTAGCCGAGTGTCGAAGGCGCATGACTTTAATCCCAGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAGTCTAGCCGAGTGTCGAAGGCGCATGACTTTAATCCCAGCAT  350

seq1  TCAGGAGGCAGATGCAGGTGGATCGCTGAGTTCAGGGCTAGCCTGGTCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCAGATGCAGGTGGATCGCTGAGTTCAGGGCTAGCCTGGTCTA  400

seq1  CAGAACAAGTTCGAGGACAACTAGGGCTACATAGAGAAACCCTATCTCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAGTTCGAGGACAACTAGGGCTACATAGAGAAACCCTATCTCAA  450

seq1  ACAAAACAAAACAGAAAACAAACAAAGAAGCCAGGAGGTGGATATCTGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAAAACAGAAAACAAACAAAGAAGCCAGGAGGTGGATATCTGGC  500

seq1  CTGGTACCCCTGGCTCCTCCTCAGCTCCAACTCTCTCACCCCACAACTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACCCCTGGCTCCTCCTCAGCTCCAACTCTCTCACCCCACAACTTT  550

seq1  CAGCCTGAAGTTACCTTGGTACCAAGGCTGCTGAAGCCACAGCTATTACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAGTTACCTTGGTACCAAGGCTGCTGAAGCCACAGCTATTACA  600

seq1  CCTGAACTTCTGGCAGTGAACAAAACAGAGACCACCACCCCATTTTACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTCTGGCAGTGAACAAAACAGAGACCACCACCCCATTTTACAC  650

seq1  ACACACACACACACACACACACACACACACACACACGTTTAAGGAATTC  697
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGTTTAAGGAATTC  699

seq1: chr17_28147498_28148616
seq2: B6Ng01-043J20.g_68_1167

seq1  GAATTCATATGTTTGAGCCTCACTTACAAAGTGAGATTGTGCTGGGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGTTTGAGCCTCACTTACAAAGTGAGATTGTGCTGGGGGTA  50

seq1  GTCCTGTGACCGGTGTGTGCTGTGCTGGGGATCACAGCACGTGCAGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGACCGGTGTGTGCTGTGCTGGGGATCACAGCACGTGCAGGGCA  100

seq1  GAAGCTAGAGCCTGACCAACTCCTGTCTGAGGCCTGGGAGGGAGGGAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGAGCCTGACCAACTCCTGTCTGAGGCCTGGGAGGGAGGGAGGA  150

seq1  AAAGGCCATGGGCAGCTGCAACTGCAGCACAGTGCTGGTCTAGAAGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCATGGGCAGCTGCAACTGCAGCACAGTGCTGGTCTAGAAGGCAG  200

seq1  GGCAACGTGGACACAGTTTGGGCCTCTGCAAATCTGGCTCTAAGGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGTGGACACAGTTTGGGCCTCTGCAAATCTGGCTCTAAGGCCACC  250

seq1  GTTCACTACACTCACACGTTCTCAGGGGCCTCGCCCTTTGTTATGAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTACACTCACACGTTCTCAGGGGCCTCGCCCTTTGTTATGAAGCA  300

seq1  GGCCCAAGTAGGGACATGTATAAGTGTCTGTTACGATTCCTGGTGGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGTAGGGACATGTATAAGTGTCTGTTACGATTCCTGGTGGGCCC  350

seq1  AGGAGTAGCAGCTACATGGCAGACTCTGTTATCACTTGCCTGGAGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGCAGCTACATGGCAGACTCTGTTATCACTTGCCTGGAGCTTTG  400

seq1  GAGAAATGACTGAACTTAGACTGTCCTCAGACCTTAGGAAAGGCAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGACTGAACTTAGACTGTCCTCAGACCTTAGGAAAGGCAGCAGT  450

seq1  GGTGGCAGGTGACCCTCAGGTTGGTGGCCAAGTGCCTGGGGAGTAGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGTGACCCTCAGGTTGGTGGCCAAGTGCCTGGGGAGTAGTGGA  500

seq1  GCTCAAGCCCTTCACACAACTGCCTTCCCCCATGGCTCCTCCCATCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGCCCTTCACACAACTGCCTTCCCCCATGGCTCCTCCCATCACAG  550

seq1  ACAGAGGAGGTGTGCATGGGCCAGCCTCCTGGATTTACCACATGCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGGTGTGCATGGGCCAGCCTCCTGGATTTACCACATGCCTCTT  600

seq1  AGGAACTGTGGCCAGCAAGGCTGGGGGGTTGGTGGCTGAGAGGGTGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTGGCCAGCAAGGCTGGGGGGTTGGTGGCTGAGAGGGTGTCAG  650

seq1  GGAGCATGCTCAGTTCATAGGTTTGGGGTTACGCTGCTTACTGCTGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGCTCAGTTCATAGGTTTGGGGTTACGCTGCTTACTGCTGGGAA  700

seq1  ACAGCCTTTGGTGAACTTCACTGGGCAAGATGACTTCCTCACACTGCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTGGTGAACTTCACTGGGCAAGATGACTTCCTCACACTGCGTG  750

seq1  ATGAAGGTCTACCTCCAAAAGAGTGTCCATCAGCGACACCGGCCTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCTACCTCCAAAAGAGTGTCCATCAGCGACACCGGCCTTTTCC  800

seq1  TCGTGCTCCGTGAGCGTCTCGCTAACCCAGGAGTGATGGAGCTTACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTCCGTGAGCGTCTCGCTAACCCAGGAGTGATGGAGCTTACTTCC  850

seq1  TAACCAGCTTCCCAAGGGGGGCTCTGACACCAGACTTCAGGGTTCCTGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCTTCCCAAGGGGGGCTCTGACACCAGACTTCAGGGTTCCTGGG  900

seq1  TCCTTGAGTGAGGTCAGAGCATGTTGTCCTGACCCCTGAGAAGCTCCAGG  950
      ||||||||||| |||||||||||||||| ||||||||||| |||| || |
seq2  TCCTTGAGTGA-GTCAGAGCATGTTGTCTTGACCCCTGAG-AGCTTCA-G  947

seq1  TATCAAAGACGGGAAGCCACATGCGCCTCCCACACAGATAACCTGTGTGG  1000
      ||||||||||||| |||||||||||||||||||||||||| |  ||||||
seq2  TATCAAAGACGGG-AGCCACATGCGCCTCCCACACAGATACCTGGTGTGG  996

seq1  GTAGTTGTTGCATGGCTGGGTTGGGTTGTATGCTTACTGATTTATAACTT  1050
      |||||   |||||||||||  |||| ||||||||||| ||||  ||||||
seq2  GTAGT--GTGCATGGCTGG--TGGG-TGTATGCTTAC-GATT--TAACTT  1038

seq1  TTCTCACCTAGTAACTGCACACTGTCGATAGCTTTCTATGGCAGGTGGGC  1100
      |||||||||||  ||||||||||||||||||| |||||| ||||| ||||
seq2  TTCTCACCTAG--ACTGCACACTGTCGATAGC-TTCTAT-GCAGG-GGGC  1083

seq1  TTTGGAGCTGGCACTCTGT  1119
      ||||||||||  |||||||
seq2  TTTGGAGCTG--ACTCTGT  1100