BAC Information

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BAC

Clone NameB6Ng01-043K20
Chromosome17 (Build37)
Map Location 61,091,073 - 61,092,266
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043K20.bB6Ng01-043K20.g
ACCDH869667DH869668
length4901,170
definitionDH869667|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K20, 5' end.DH869668|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tagcaagtatacactcgaataaattttagccatttaagtataacttttca
aatacacaaaattaaaaaatatagtgataaaattcctcatttttaacact
tgcacttactgtttactaatgaaaatacaccaagatcactacatatattg
cttaaaataagcttttacctacttagaataatctcattgactttaaatat
gtgatataatttaaagatagtggagaacacacacacacacacatatatgt
gtgtgtgtgtgtgtgtgcctctatctatatataatatcacatatatatag
agagagagagatttctgtgtgggtgagagcgcgtttttagcaatatatgt
agagagcgtggtgtgtttttatttgtaaacagagagtgcgagtgtgaaaa
aagaggaattttatcactctattttttaattttgtgtatttgaaaagaga
tacataaatggctaaaatatattcgagtgtatacatgcta

gaattcagtagatcctttggtaaaacataaccgccactgttttttttttt
caatattcatacaatacaattcaactaaaatactaatacaattcctcaat
ttagaaatatgtacttatcagaaacttaacattttttaagggtgcatgaa
ctggggttgaccatatatctatgaccaagtaaaatgcagaacaatctcta
tatgattactttgaattatcaataaatgtagaccgttgactctattacat
gggaaacatttattacactattacttaatcattatattaagtacttattc
atccacacatgaatctagtttcatttaatgtgaatctacttcaaattagt
ttttcatactctgtttgataccaagacaagccagacataaaacataggtt
ttcaaataatttcatgattacatgtgtattttctaagaacagaaaatcaa
cagcagttgtattcaaatgagggtacatcaggttaaatgtctctggtact
ttaatcattctatacatacatttgtatatgctacacctgtatttatgaat
aaaggggtggaaagtatagataagttaattgaattcacagtacataccat
tttgatggttcatctaaaactgtaaactagatacaatttcaaacattgtc
ttggacaaataatttcatacgcatatcactaattaaatgcattgaaatat
aacaaaatgttgtgaaactctatgtgtgtgaggtttgttgttgtaataaa
ttgcatttgatacatcacctctacagttgaattgaataatagaatatttt
cttattgtaacaataaagataacaagaatgtttaatttaatagtgctgcc
agggtacaaaacatacaaaattcctaggatatatgcttataattattact
ttatcaatatgtccctctgagtgaacatttaacttaattttgaccaaatt
aaatgtcagaaataatatatttcacatgtgactactactaaagcatatgc
tgatttattggccatgatctcctatttaaagcatgacagaactattaaac
cctccattcagacgcatttttattattacagaatgcagtcaactgggagt
ctcatagtgcatgaaatagagcctacccgatatatctgcatgtgtgtgtg
ttggacttgaactgtcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_61091073_61092266
seq2: B6Ng01-043K20.g_65_1234 (reverse)

seq1  CACTGACACAGCTCTCAGTCCACACACACACATATGCAGATAAATTAATC  50
      |||||  |||| ||  |||||| ||||||||| |||||||||     |||
seq2  CACTG--ACAGTTC-AAGTCCA-ACACACACACATGCAGATA----TATC  42

seq1  TGGAGTAAGGCTCATATTTCATGGCACTATGAGACTCCCCAGTTTGACTG  100
       ||    |||||| |||||||| ||||||||||||| ||||| |||||||
seq2  GGG---TAGGCTC-TATTTCAT-GCACTATGAGACT-CCCAG-TTGACTG  85

seq1  CA-TCTGTTAATAATAAAAATTTGCCTTCTGGAATGAGAGTTTAATAGTT  149
      || |||| |||||||||||||    | |||| |  ||| |||||||||||
seq2  CATTCTG-TAATAATAAAAAT---GCGTCTGAATGGAGGGTTTAATAGTT  131

seq1  CTTGTTCATGCTTTAAATAGGAGATCATGG-CAATAAATCAGCATTATGC  198
      ||   ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CT--GTCATGCTTTAAATAGGAGATCATGGCCAATAAATCAGCA-TATGC  178

seq1  TTTTAGTAGGTAGTCACATGTGAAATATATTATTTCTGACATTTAATTTG  248
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAGTA-GTAGTCACATGTGAAATATATTATTTCTGACATTTAATTTG  226

seq1  GTCAAAATTAAGTTAAAATGTTCACTCAGAGGGACATATTGATAAAGTAA  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTAAGTT-AAATGTTCACTCAGAGGGACATATTGATAAAGTAA  275

seq1  TAATTATAAGCATATAATCCTAGGAATTTTGTATGTTTTGTACCCTGGCA  348
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAATTATAAGCATAT-ATCCTAGGAATTTTGTATGTTTTGTACCCTGGCA  324

seq1  GCACTATTAAATTAAACATTCTTGTTATCTTTATTGTTACAATAAGAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTAAATTAAACATTCTTGTTATCTTTATTGTTACAATAAGAAAA  374

seq1  TATTCTATTATTCAATTCAACTGTAGAGGTGATGTATCAAATGCAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTATTCAATTCAACTGTAGAGGTGATGTATCAAATGCAATTTA  424

seq1  TTACAACAACAAACCTCACACACATAGAGTTTCACAACATTTTGTTATAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACAACAAACCTCACACACATAGAGTTTCACAACATTTTGTTATAT  474

seq1  TTCAATGCATTTAATTAGTGATATGCGTATGAAATTATTTGTCCAAGACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCATTTAATTAGTGATATGCGTATGAAATTATTTGTCCAAGACA  524

seq1  ATGTTTGAAATTGTATCTAGTTTACAGTTTTAGATGAACCATCAAAATGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAATTGTATCTAGTTTACAGTTTTAGATGAACCATCAAAATGG  574

seq1  TATGTACTGTGAATTCAATTAACTTATCTATACTTTCCACCCCTTTATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACTGTGAATTCAATTAACTTATCTATACTTTCCACCCCTTTATTC  624

seq1  ATAAATACAGGTGTAGCATATACAAATGTATGTATAGAATGATTAAAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACAGGTGTAGCATATACAAATGTATGTATAGAATGATTAAAGTA  674

seq1  CCAGAGACATTTAACCTGATGTACCCTCATTTGAATACAACTGCTGTTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACATTTAACCTGATGTACCCTCATTTGAATACAACTGCTGTTGA  724

seq1  TTTTCTGTTCTTAGAAAATACACATGTAATCATGAAATTATTTGAAAACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTCTTAGAAAATACACATGTAATCATGAAATTATTTGAAAACC  774

seq1  TATGTTTTATGTCTGGCTTGTCTTGGTATCAAACAGAGTATGAAAAACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTATGTCTGGCTTGTCTTGGTATCAAACAGAGTATGAAAAACTA  824

seq1  ATTTGAAGTAGATTCACATTAAATGAAACTAGATTCATGTGTGGATGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGTAGATTCACATTAAATGAAACTAGATTCATGTGTGGATGAAT  874

seq1  AAGTACTTAATATAATGATTAAGTAATAGTGTAATAAATGTTTCCCATGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTAATATAATGATTAAGTAATAGTGTAATAAATGTTTCCCATGT  924

seq1  AATAGAGTCAACGGTCTACATTTATTGATAATTCAAAGTAATCATATAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGTCAACGGTCTACATTTATTGATAATTCAAAGTAATCATATAGA  974

seq1  GATTGTTCTGCATTTTACTTGGTCATAGATATATGGTCAACCCCAGTTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTCTGCATTTTACTTGGTCATAGATATATGGTCAACCCCAGTTCA  1024

seq1  TGCACCCTTAAAAAATGTTAAGTTTCTGATAAGTACATATTTCTAAATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTTAAAAAATGTTAAGTTTCTGATAAGTACATATTTCTAAATTG  1074

seq1  AGGAATTGTATTAGTATTTTAGTTGAATTGTATTGTATGAATATTGAAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGTATTAGTATTTTAGTTGAATTGTATTGTATGAATATTGAAAA  1124

seq1  AAAAAAACAGTGGCGGTTATGTTTTACCAAAGGATCTACTGAATTC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAGTGGCGGTTATGTTTTACCAAAGGATCTACTGAATTC  1170


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