BAC Information

Click to search

BAC

Clone NameB6Ng01-043P11
Chromosome17 (Build37)
Map Location 69,155,466 - 69,267,401
singlet/doubletdoublet
Overlap geneEG622645
Upstream geneLama1, Arhgap28, D930040M24Rik
Downstream geneEpb4.1l3, 2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043P11.bB6Ng01-043P11.g
ACCDH869866DH869867
length1,1511,097
definitionDH869866|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P11, 5' end.DH869867|Mus musculus domesticus DNA, BAC clone: B6Ng01-043P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,155,466 - 69,156,632)(69,266,296 - 69,267,401)
sequence
gaattctgtcttcctcaaggagaggcgatgtggccattggctgctgttcc
cagaactgcctgtttgtttggttagtggtaagtttctctctgagtctctg
agtcaccatcttcccagaacacaaaacataaatctccttttcttttttat
cgggagactgacatcctcatataacatttcataataatttgttcaaatgg
catattgaaaatatatgaaatgtatatgagaaggttgttgagtactagag
atatgtaagcctcaagttaatcagctggcttaataaagaaccaggagagc
tcacggcatcaaaattcagactctagcagagatgaggtcccttcctctca
ctaatacactaggtattctattttcaagttctgccatagggaaccgtctt
taatatcagattgcttcaaacctttttctttaaaaaaacaaattccactt
aagttaaaatgggttatgggaaataaatagtctaaaatgtaaaaatccaa
tgacttaatgtctgttgtaaaagctatttctctccttttgagcacagaaa
aatagcaaaccctgctcccataccttctcacagtacaaacaacatctatg
catcacttacggccacttttcaaatgtttgtgatgtttctagtcattatc
cggtcacaggcaaggggattttcttcagggaaactaaacttaagttttca
ttatctctgactccatcatctctgatgtctacacaggtaggaattttata
aaattaaatgaaaattcttccggtattgatgtacagtcttaaaaatgttc
tgtcctcccaataaagatccatacaacattaagataaaaagagatggctt
ctgggttaaatattatcctcaactaaacatcagcagccttccctattaga
ctgcaataaagcaagtcctccactactctttcccacccacaatgccctgc
aagcttctgaaagtcataatccagatgccacagtgacttgagtaccctca
aagaactgtctaatattagttacattcctgttagacctaattccaagaga
cttatgagactgagagggatcagactaaaagctctgcctcagaactgatt
gcatgccgaaggtgcgtacagtgtcatggagagaagtcaccaggtcttca
c
gaattccacacctcatgctggaaggggaaaggaaaggtaaatatggataa
ttttacccgttgaagagtacccagctgctagaaatgtagaggagctcata
actcaatacagaaatgagagaagcatttgaacaagttgtttgaatcgtaa
tcccaaagcatgcaatgccttttattgggtcattgggggaatgcatcaat
atgagggaaacggaattgctatttgaacatccaaagtatatttcgcccca
ctaatgtctgatttgattttgtagctttccaatgatgtttcatactacta
ataacttagggagcaggaattacagacgactcagtgtttctcacaagtca
catacttctaatttaataatatgggcatctctatttgtgttagtcggttt
tgcatcactattatgaatacctgaggtatgatcaacataaagagaggcaa
agattacatgagcgtgatttctagatttagaaaacacagtcttatttctt
tagggcctgagatgaagaggtctattatggataaagatggtgagaacata
aagttgttccccgccccccagggtatggtacaagaaaagaaagggactca
aatcccacacgttttgtcaatcaccctcttttaagggtcactctcaaagg
ctagaagactcccattaagcttcacatcataaaggtttgcttctttccaa
caggcacacagagatccaggctctaaaacacaagcctcttcggatattta
aaatccttattagaatgattttttgaagcaatattggaagtccaattttt
tttgttaatggaaatgagttaagatttggtaactccttacaatgactgct
agatgaggctatcacttttggagaagacagcatttctatgagttaaataa
aggattctagaaccagtcatacagtgttgtaggacagcagataaatgggg
ggaggatttacactaagagaaagtaccaccaggaatgagacccaagcacc
atggaaatgttagttattttggatttcagactatttggaaagatcagtgc
ccttatgaagagaaccagaaagcatcttgtcaatgaagagggaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_69155466_69156632
seq2: B6Ng01-043P11.b_44_1194

seq1  GAATTCTGTCTTCCTCAAGGAGAGGCGATGTGGCCATTGGCTGCTGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTCCTCAAGGAGAGGCGATGTGGCCATTGGCTGCTGTTCC  50

seq1  CAGAACTGCCTGTTTGTTTGGTTAGTGGTAAGTTTCTCTCTGAGTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCCTGTTTGTTTGGTTAGTGGTAAGTTTCTCTCTGAGTCTCTG  100

seq1  AGTCACCATCTTCCCAGAACACAAAACATAAATCTCCTTTTCTTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCATCTTCCCAGAACACAAAACATAAATCTCCTTTTCTTTTTTAT  150

seq1  CGGGAGACTGACATCCTCATATAACATTTCATAATAATTTGTTCAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGACTGACATCCTCATATAACATTTCATAATAATTTGTTCAAATGG  200

seq1  CATATTGAAAATATATGAAATGTATATGAGAAGGTTGTTGAGTACTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAAAATATATGAAATGTATATGAGAAGGTTGTTGAGTACTAGAG  250

seq1  ATATGTAAGCCTCAAGTTAATCAGCTGGCTTAATAAAGAACCAGGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGCCTCAAGTTAATCAGCTGGCTTAATAAAGAACCAGGAGAGC  300

seq1  TCACGGCATCAAAATTCAGACTCTAGCAGAGATGAGGTCCCTTCCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGCATCAAAATTCAGACTCTAGCAGAGATGAGGTCCCTTCCTCTCA  350

seq1  CTAATACACTAGGTATTCTATTTTCAAGTTCTGCCATAGGGAACCGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACACTAGGTATTCTATTTTCAAGTTCTGCCATAGGGAACCGTCTT  400

seq1  TAATATCAGATTGCTTCAAACCTTTTTCTTTAAAAAAACAAATTCCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCAGATTGCTTCAAACCTTTTTCTTTAAAAAAACAAATTCCACTT  450

seq1  AAGTTAAAATGGGTTATGGGAAATAAATAGTCTAAAATGTAAAAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAAATGGGTTATGGGAAATAAATAGTCTAAAATGTAAAAATCCAA  500

seq1  TGACTTAATGTCTGTTGTAAAAGCTATTTCTCTCCTTTTGAGCACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAATGTCTGTTGTAAAAGCTATTTCTCTCCTTTTGAGCACAGAAA  550

seq1  AATAGCAAACCCTGCTCCCATACCTTCTCACAGTACAAACAACATCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAACCCTGCTCCCATACCTTCTCACAGTACAAACAACATCTATG  600

seq1  CATCACTTACGGCCACTTTTCAAATGTTTGTGATGTTTCTAGTCATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTACGGCCACTTTTCAAATGTTTGTGATGTTTCTAGTCATTATC  650

seq1  CGGTCACAGGCAAGGGGATTTTCTTCAGGGAAACTAAACTTAAGTTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCACAGGCAAGGGGATTTTCTTCAGGGAAACTAAACTTAAGTTTTCA  700

seq1  TTATCTCTGACTCCATCATCTCTGATGTCTACACAGGTAGGAATTTTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTGACTCCATCATCTCTGATGTCTACACAGGTAGGAATTTTATA  750

seq1  AAATTAAATGAAAATTCTTCCGGTATTGATGTACAGTCTTAAAAATGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATGAAAATTCTTCCGGTATTGATGTACAGTCTTAAAAATGTTC  800

seq1  TGTCCTCCCAATAAAGATCCATACAACATTAAGATAAAAAGAGATGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCCCAATAAAGATCCATACAACATTAAGATAAAAAGAGATGGCTT  850

seq1  CTGGGTTAAATATTATCCTCAACTAAACATCAGCAGCCTTCCCTATTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTAAATATTATCCTCAACTAAACATCAGCAGCCTTCCCTATTAGA  900

seq1  CTGCAATAAAGCAAGTCCTCCACTACTCTTTCCCACCCACAATGCCCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATAAAGCAAGTCCTCCACTACTCTTTCCCACCCACAATGCCCTGC  950

seq1  AAGCTTCTGAAAGTCATAATCCAGATGCCACAGTGACTTGAGTACCCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTGAAAGTCATAATCCAGATGCCACAGTGACTTGAGTACCCTCA  1000

seq1  AAGAACTGTCTAATATTAAGTTACATTCCTGTTAGGAACCTAATTCCAAG  1050
      ||||||||||||||||| |||||||||||||||||  |||||||||||||
seq2  AAGAACTGTCTAATATT-AGTTACATTCCTGTTAG--ACCTAATTCCAAG  1047

seq1  AGACCTATGAGGACTTGAGAGGGATCAGACTAAAAGCCTCTGCCCTCAGA  1100
      |||| ||||| ||| ||||||||||||||||||||| ||||| |||||||
seq2  AGACTTATGA-GAC-TGAGAGGGATCAGACTAAAAG-CTCTG-CCTCAGA  1093

seq1  ACTGTATTGCAGTGCCAGAAGGTGCAGTACAAGTTGTCATGGGAGAG-AG  1149
      |||| |||||| |||| |||||||| |||||   |||||| |||||| ||
seq2  ACTG-ATTGCA-TGCC-GAAGGTGC-GTACA--GTGTCAT-GGAGAGAAG  1136

seq1  TCACCCAAGAGTCTTCAC  1167
      |||||  || ||||||||
seq2  TCACC--AG-GTCTTCAC  1151

seq1: chr17_69266296_69267401
seq2: B6Ng01-043P11.g_69_1165 (reverse)

seq1  CTCCTCCTTC--CATTGACACAGCTGCTTTCTGGTTTCTTCTTCATAAGG  48
      ||||||| ||  |||||||| || ||||||||||||   |||||||||||
seq2  CTCCTCCCTCTTCATTGACA-AGATGCTTTCTGGTT--CTCTTCATAAGG  47

seq1  GCACCTGATCTTTTCCAAATAGTTCTGACAATCCAAAATAACTAACCATT  98
      ||| |||||| ||||||||||| ||||| |||||||||||||||| ||||
seq2  GCA-CTGATC-TTTCCAAATAG-TCTGA-AATCCAAAATAACTAA-CATT  92

seq1  TCCCTGGTGCTTGGGTCTCATTCCTTGGTTGGTACTTTCTTCTTAGTGTA  148
      ||| |||||||||||||||||||||  | |||||||||| ||||||||||
seq2  TCCATGGTGCTTGGGTCTCATTCCT--GGTGGTACTTTC-TCTTAGTGTA  139

seq1  AATCCT-CCCCCATTTATCTGCTGTCCTTACAACACTGTATGACTGGTTC  197
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  AATCCTCCCCCCATTTATCTGCTGTCC-TACAACACTGTATGACTGGTTC  188

seq1  TAGAATCCTTATTTTAACTCATAGAAATGCTGTCTTCTCCAAAAGTGATA  247
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCTTTATTTAACTCATAGAAATGCTGTCTTCTCCAAAAGTGATA  238

seq1  GCCTCATCTAGCAGTCATTGTAAGGAGTTACCAAATCTTAACTCATTTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCTAGCAGTCATTGTAAGGAGTTACCAAATCTTAACTCATTTCC  288

seq1  ATTAACAAAAAAAATTGGACTTCCAATATTGCTTCAAAAAATCATTCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAAAAAAATTGGACTTCCAATATTGCTTCAAAAAATCATTCTAA  338

seq1  TAAGGATTTTAAATATCCGAAGAGGCTTGTGTTTTAGAGCCTGGATCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATTTTAAATATCCGAAGAGGCTTGTGTTTTAGAGCCTGGATCTCT  388

seq1  GTGTGCCTGTTGGAAAGAAGCAAACCTTTATGATGTGAAGCTTAATGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTGTTGGAAAGAAGCAAACCTTTATGATGTGAAGCTTAATGGGA  438

seq1  GTCTTCTAGCCTTTGAGAGTGACCCTTAAAAGAGGGTGATTGACAAAACG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTAGCCTTTGAGAGTGACCCTTAAAAGAGGGTGATTGACAAAACG  488

seq1  TGTGGGATTTGAGTCCCTTTCTTTTCTTGTACCATACCCTGGGGGGCGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATTTGAGTCCCTTTCTTTTCTTGTACCATACCCTGGGGGGCGGG  538

seq1  GAACAACTTTATGTTCTCACCATCTTTATCCATAATAGACCTCTTCATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTTTATGTTCTCACCATCTTTATCCATAATAGACCTCTTCATCT  588

seq1  CAGGCCCTAAAGAAATAAGACTGTGTTTTCTAAATCTAGAAATCACGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTAAAGAAATAAGACTGTGTTTTCTAAATCTAGAAATCACGCTC  638

seq1  ATGTAATCTTTGCCTCTCTTTATGTTGATCATACCTCAGGTATTCATAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTTTGCCTCTCTTTATGTTGATCATACCTCAGGTATTCATAAT  688

seq1  AGTGATGCAAAACCGACTAACACAAATAGAGATGCCCATATTATTAAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCAAAACCGACTAACACAAATAGAGATGCCCATATTATTAAATT  738

seq1  AGAAGTATGTGACTTGTGAGAAACACTGAGTCGTCTGTAATTCCTGCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATGTGACTTGTGAGAAACACTGAGTCGTCTGTAATTCCTGCTCC  788

seq1  CTAAGTTATTAGTAGTATGAAACATCATTGGAAAGCTACAAAATCAAATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTATTAGTAGTATGAAACATCATTGGAAAGCTACAAAATCAAATC  838

seq1  AGACATTAGTGGGGCGAAATATACTTTGGATGTTCAAATAGCAATTCCGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAGTGGGGCGAAATATACTTTGGATGTTCAAATAGCAATTCCGT  888

seq1  TTCCCTCATATTGATGCATTCCCCCAATGACCCAATAAAAGGCATTGCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCATATTGATGCATTCCCCCAATGACCCAATAAAAGGCATTGCAT  938

seq1  GCTTTGGGATTACGATTCAAACAACTTGTTCAAATGCTTCTCTCATTTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGATTACGATTCAAACAACTTGTTCAAATGCTTCTCTCATTTCT  988

seq1  GTATTGAGTTATGAGCTCCTCTACATTTCTAGCAGCTGGGTACTCTTCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAGTTATGAGCTCCTCTACATTTCTAGCAGCTGGGTACTCTTCAA  1038

seq1  CGGGTAAAATTATCCATATTTACCTTTCCTTTCCCCTTCCAGCATGAGGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAAAATTATCCATATTTACCTTTCCTTTCCCCTTCCAGCATGAGGT  1088

seq1  GTGGAATTC  1106
      |||||||||
seq2  GTGGAATTC  1097