BAC Information

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BAC

Clone NameB6Ng01-044M21
Chromosome17 (Build37)
Map Location 34,128,604 - 34,288,486
singlet/doubletdoublet
Overlap geneH2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2
Upstream geneC920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235
Downstream geneH2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M21.bB6Ng01-044M21.g
ACCDH870454DH870455
length1,1581,179
definitionDH870454|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M21, 5' end.DH870455|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,287,325 - 34,288,486)(34,128,604 - 34,129,787)
sequence
gaattccaccagtttatttcttagtgaccacctatgacacggtgcccttg
tgacaaggaggggctctcagaagaccttgaaccccctccttagatcagct
cacttcagaaaacacctgagacagacttcattatgaatacctcccaagct
gttacacatcggaagccgggcatggtggcgtacgcctttaatcccagcac
tctggaggcagaggcaggtggatttctgagtttgaggccagcctggtcta
caaagtgagttccaggacagccagggctatacagagaaaccctgtctcaa
aaaaacaaaaaacaaaaaaaaaattacattgggaagggaaactgaataga
ggcagtatgacacaagaaaatggggtgtcctgaagatattgggggcatga
aggaatcctcaggagtctgaatctccttggttctgggttctgctttctag
tgccgtcctgcagaagcaaccagaatcaggcagtgagaatggtctgcaaa
acacccgaccacctgtgtccataaccacccagcaccagagaccacaaaca
ctggtaatgcaaaacaaatgcccagcaaccaatgaccaagacaaaggagc
tacctccagcctacctaaacaggctataagctgcttatcataagcaagca
atattatgaacatataccctacccctcccgaggacgactgagcacaaagc
ccaagacaaatgttaccttctgggtaggtggatccggggagaggagtgta
gcctagaagaagaagagacatcattattccagcccctgtggatgaaggag
gttcctcaccacagaagttgggagttcaaatgagagaatcaacccagaca
gaaagcaagagagactgggagaaagaggaggaccagggaggactgcagaa
tgttcaggggatcactcactggaggaatgagacttgcgccatctgaagaa
gccaacacagaagatgatgaagcccaggcccacggtggcctgcagacaca
gagaccttcactgtcttggatggggacagccaagtgctacaaagtaatca
agaggtcttaattaatatctacagcttggttccaggagctgcacaagaaa
gagtcaaccacacccattcactactaagaacacgaaacctgtcttcctag
tgttacca
gaattctctgctttgcggttttcacgggtccttatgatctttgggctgaa
acacaacttctgagtgagattacacctccggctcctcactcgattgttac
tcaacgccacaatctccagtctcagtgacatagacacccacatacacaga
cacacagatacacacagagagacacacaagtctcctgtgatcccggcact
tgtcatgctgaggtgaggcaggaggatagagaattccaggtcgggattgg
agagatgattcagagactgacagcattaagggctcttcctaggtcctgag
ttgaattctcagtccacgtggtggctcacaatcatctataatgagatctg
gcgccctctactggcagacaggcacatacgcaggcagaacaatgtaccta
ataaataagtcttaaaaaaaaaaaaattcaaggtcaacctgagctacaac
aaggcatacaacacaaacagcctaaatgaacgaacacacaggctccatag
accagtagcatcagaggccactctgtagggtgagttgtgtcgatttcttc
cttcccttgctgaatccctaagatcagtgtgtacatctagtgcaggggac
cctacagtcctgcagtactgtttggagctgttcctatctgctgtaatgac
ccccaatattgttcaaggatttctttctttatagaaatcttatttccctc
catttcattttttatattaaaaaatatttttatgtatataggtgttttgc
ctccatgtatgtctgtgcaccacgtgcatggagtgcccaaggcagccaga
agagggcgccctagccactctgagactggagttacaagtgggtgagagct
ggggaactgaacccaggtcctctggaacagcagtaagcattcttcacttc
tgaacaatctctcaagctccataattttactcagaagtgacgccatcttt
atttttatgccttggcttctctgtgattctttctctgcagcacagggcct
cactcagcctggagccactaaactaccctgcagagaagtttgaacagaga
agccttgccttcttcagtcaccaaggtccagaaaaaggagcctcaatctg
tcccccacagggcctcagtctacccaacgtctgatgtcctctcagcacca
atgcagcattgctaactacccaccatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34287325_34288486
seq2: B6Ng01-044M21.b_46_1203 (reverse)

seq1  TGGTAACCATAGGAAGACAGTTTCCCCTGTTC-TAGTAGTGAAT-GGTGT  48
      |||||||  ||||||||||| ||  | ||||| ||||||||||| |||||
seq2  TGGTAACACTAGGAAGACAGGTT-TCGTGTTCTTAGTAGTGAATGGGTGT  49

seq1  GGTTGACTC-TTCTTGTTGCAGGCTCCCTGGGACCAAGCTGTAGATATTA  97
      ||||||||| |||||| |||| ||| ||||| ||||||||||||||||||
seq2  GGTTGACTCTTTCTTG-TGCA-GCT-CCTGGAACCAAGCTGTAGATATTA  96

seq1  ATTTTAAGACCTCTTTGATTACTTTGTAGCACCTGGGCTGTCCCCCATCC  147
      |  |||||||||| ||||||||||||||||| || |||||| ||||||||
seq2  A--TTAAGACCTC-TTGATTACTTTGTAGCA-CTTGGCTGT-CCCCATCC  141

seq1  -AGACAGTGAAGGTCTCTGTGTCTGCA-GCCACCCTGGGCCTGGGCTTCA  195
       |||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  AAGACAGTGAAGGTCTCTGTGTCTGCAGGCCACCGTGGGCCTGGGCTTCA  191

seq1  TCATCTTCTGTGTTGGCTTCTTCAGATGGCGCAAGTCTCATTCCTCCAGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCTGTGTTGGCTTCTTCAGATGGCGCAAGTCTCATTCCTCCAGT  241

seq1  GAGTGATCCCCTGAACATTCTGCAGTCCTCCCTGGTCCTCCTCTTTCTCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCCCCTGAACATTCTGCAGTCCTCCCTGGTCCTCCTCTTTCTCC  291

seq1  CAGTCTCTCTTGCTTTCTGTCTGGGTTGATTCTCTCATTTGAACTCCCAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCTTGCTTTCTGTCTGGGTTGATTCTCTCATTTGAACTCCCAA  341

seq1  CTTCTGTGGTGAGGAACCTCCTTCATCCACAGGGGCTGGAATAATGATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGTGAGGAACCTCCTTCATCCACAGGGGCTGGAATAATGATGT  391

seq1  CTCTTCTTCTTCTAGGCTACACTCCTCTCCCCGGATCCACCTACCCAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCTTCTAGGCTACACTCCTCTCCCCGGATCCACCTACCCAGAA  441

seq1  GGTAACATTTGTCTTGGGCTTTGTGCTCAGTCGTCCTCGGGAGGGGTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATTTGTCTTGGGCTTTGTGCTCAGTCGTCCTCGGGAGGGGTAGG  491

seq1  GTATATGTTCATAATATTGCTTGCTTATGATAAGCAGCTTATAGCCTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTTCATAATATTGCTTGCTTATGATAAGCAGCTTATAGCCTGTT  541

seq1  TAGGTAGGCTGGAGGTAGCTCCTTTGTCTTGGTCATTGGTTGCTGGGCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGGCTGGAGGTAGCTCCTTTGTCTTGGTCATTGGTTGCTGGGCAT  591

seq1  TTGTTTTGCATTACCAGTGTTTGTGGTCTCTGGTGCTGGGTGGTTATGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCATTACCAGTGTTTGTGGTCTCTGGTGCTGGGTGGTTATGGA  641

seq1  CACAGGTGGTCGGGTGTTTTGCAGACCATTCTCACTGCCTGATTCTGGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGTCGGGTGTTTTGCAGACCATTCTCACTGCCTGATTCTGGTT  691

seq1  GCTTCTGCAGGACGGCACTAGAAAGCAGAACCCAGAACCAAGGAGATTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAGGACGGCACTAGAAAGCAGAACCCAGAACCAAGGAGATTCA  741

seq1  GACTCCTGAGGATTCCTTCATGCCCCCAATATCTTCAGGACACCCCATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGAGGATTCCTTCATGCCCCCAATATCTTCAGGACACCCCATTT  791

seq1  TCTTGTGTCATACTGCCTCTATTCAGTTTCCCTTCCCAATGTAATTTTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTCATACTGCCTCTATTCAGTTTCCCTTCCCAATGTAATTTTTT  841

seq1  TTTTGTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTGTTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  891

seq1  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCAC  941

seq1  CTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTACGCCACCATGCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTACGCCACCATGCCC  991

seq1  GGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAATGAAGTCTGTCTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCGATGTGTAACAGCTTGGGAGGTATTCATAATGAAGTCTGTCTC  1041

seq1  AGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTCTGAAGTGAGCTGATCTAAGGAGGGGGTTCAAGGTCTTCTG  1091

seq1  AGAGCCCCTCCTTGTCACAAGGGCACCGTGTCATAGGTGGTCACTAAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCTCCTTGTCACAAGGGCACCGTGTCATAGGTGGTCACTAAGAA  1141

seq1  ATAAACTGGTGGAATTC  1162
      |||||||||||||||||
seq2  ATAAACTGGTGGAATTC  1158

seq1: chr17_34128604_34129787
seq2: B6Ng01-044M21.g_71_1249

seq1  GAATTCTCTGCTTTGCGGTTTTCACGGGTCCTTATGATCTTTGGGCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTTTGCGGTTTTCACGGGTCCTTATGATCTTTGGGCTGAA  50

seq1  ACACAACTTCTGAGTGAGATTACACCTCCGGCTCCTCACTCGATTGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTTCTGAGTGAGATTACACCTCCGGCTCCTCACTCGATTGTTAC  100

seq1  TCAACGCCACAATCTCCAGTCTCAGTGACATAGACACCCACATACACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGCCACAATCTCCAGTCTCAGTGACATAGACACCCACATACACAGA  150

seq1  CACACAGATACACACAGAGAGACACACAAGTCTCCTGTGATCCCGGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATACACACAGAGAGACACACAAGTCTCCTGTGATCCCGGCACT  200

seq1  TGTCATGCTGAGGTGAGGCAGGAGGATAGAGAATTCCAGGTCGGGATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCTGAGGTGAGGCAGGAGGATAGAGAATTCCAGGTCGGGATTGG  250

seq1  AGAGATGATTCAGAGACTGACAGCATTAAGGGCTCTTCCTAGGTCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGATTCAGAGACTGACAGCATTAAGGGCTCTTCCTAGGTCCTGAG  300

seq1  TTGAATTCTCAGTCCACGTGGTGGCTCACAATCATCTATAATGAGATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCTCAGTCCACGTGGTGGCTCACAATCATCTATAATGAGATCTG  350

seq1  GCGCCCTCTACTGGCAGACAGGCACATACGCAGGCAGAACAATGTACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTCTACTGGCAGACAGGCACATACGCAGGCAGAACAATGTACCTA  400

seq1  ATAAATAAGTCTTAAAAAAAAAAAAATTCAAGGTCAACCTGAGCTACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAGTCTTAAAAAAAAAAAAATTCAAGGTCAACCTGAGCTACAAC  450

seq1  AAGGCATACAACACAAACAGCCTAAATGAACGAACACACAGGCTCCATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATACAACACAAACAGCCTAAATGAACGAACACACAGGCTCCATAG  500

seq1  ACCAGTAGCATCAGAGGCCACTCTGTAGGGTGAGTTGTGTCGATTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAGCATCAGAGGCCACTCTGTAGGGTGAGTTGTGTCGATTTCTTC  550

seq1  CTTCCCTTGCTGAATCCCTAAGATCAGTGTGTACATCTAGTGCAGGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTGCTGAATCCCTAAGATCAGTGTGTACATCTAGTGCAGGGGAC  600

seq1  CCTACAGTCCTGCAGTACTGTTTGGAGCTGTTCCTATCTGCTGTAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGTCCTGCAGTACTGTTTGGAGCTGTTCCTATCTGCTGTAATGAC  650

seq1  CCCCAATATTGTTCAAGGATTTCTTTCTTTATAGAAATCTTATTTCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATTGTTCAAGGATTTCTTTCTTTATAGAAATCTTATTTCCCTC  700

seq1  CATTTCATTTTTTATATTAAAAAATATTTTTATGTATATAGGTGTTTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATTTTTTATATTAAAAAATATTTTTATGTATATAGGTGTTTTGC  750

seq1  CTCCATGTATGTCTGTGCACCACGTGCATGGAGTGCCCAAGGCAGCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTATGTCTGTGCACCACGTGCATGGAGTGCCCAAGGCAGCCAGA  800

seq1  AGAGGGCGCCCTAGCCACTCTGAGACTGGAGTTACAAGTGGGTGAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCGCCCTAGCCACTCTGAGACTGGAGTTACAAGTGGGTGAGAGCT  850

seq1  -GGGAACTGAACCCAGGTCCTCTGGAACAGCAGTAAGCATTCTTCACTTC  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACTGAACCCAGGTCCTCTGGAACAGCAGTAAGCATTCTTCACTTC  900

seq1  TGAACAATCTCTCAAGCTCCATAATTTTACTCAGAAGTGACGCCATCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATCTCTCAAGCTCCATAATTTTACTCAGAAGTGACGCCATCTTT  950

seq1  ATTTTTATGCCTTGGC-TCTCTGTGATTCTTTTCTCTGCAGCACAGGGCC  998
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  ATTTTTATGCCTTGGCTTCTCTGTGATTC-TTTCTCTGCAGCACAGGGCC  999

seq1  TCACTCAGGCCTGAGCCACCTAACTACCCTGCAGAGAAGGTTTGAACAGG  1048
      |||||||| |  |||||||  ||||||||||||||||| ||||||||| |
seq2  TCACTCAGCCTGGAGCCACTAAACTACCCTGCAGAGAA-GTTTGAACA-G  1047

seq1  AGAAGCCCTGGCTTCCTCAGGGTCACAGAGTCCCAG-AGAAGGAGCTTCC  1097
      ||||||| || |||| |||  |||||  ||  |||| | |||||||  | 
seq2  AGAAGCCTTGCCTTCTTCA--GTCACCAAGGTCCAGAAAAAGGAGC--CT  1093

seq1  CAATCTGT-CCCCACAGTG-CTCAGTCTACCAAAACGTCTGATGTCCTC-  1144
      |||||||| |||||||| | |||||||||||  |||||||||||||||| 
seq2  CAATCTGTCCCCCACAGGGCCTCAGTCTACC-CAACGTCTGATGTCCTCT  1142

seq1  CAGCACCAATGCAGCATTGCTAACATAACCCACACATGGA  1184
      ||||||||||||||||||||||||   |||||| ||||||
seq2  CAGCACCAATGCAGCATTGCTAAC--TACCCAC-CATGGA  1179