BAC Information

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BAC

Clone NameB6Ng01-045D12
Chromosome17 (Build37)
Map Location 58,814,128 - 58,957,360
singlet/doubletdoublet
Overlap geneLOC668648
Upstream geneCntnap5c, LOC674419, LOC620408, EG545216
Downstream gene2610034M16Rik, Nudt12, 4930505H01Rik, LOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045D12.bB6Ng01-045D12.g
ACCDH870739DH870740
length6061,121
definitionDH870739|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D12, 5' end.DH870740|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,956,755 - 58,957,360)(58,814,128 - 58,815,272)
sequence
gaattctgtattgctaaatctgattcaacacgtatttcaggattcacaat
aagattgtcaggcttgcatgcaaactctttgctgaattacatccctgcct
gcacaagtttgtgcactaaatggagctcagctagtaagcacaaagtcttc
tatatacagattttctagagattccaggtaaattctgtttggtgacagaa
gagggaaagagagaacagctagcatgatacatgatacaaaagcctgcatg
tgcacagatacagagaagcagaattcaaatgtatggattcaaaaccctaa
actatgccggggcctagcaaacacagaagtggatgatcacagtcagctat
tggatggagcacagggcccccaatggaggagctagagaaagtacccaagg
agctaaagggaactgcaaccttataggtggaacaacaatatgaactaacc
agtaccccggagctcttgactatagctgcatatgtatcaaaaaatggcct
agtcggccattactggaaagagaggcccattggacttgcaaactttatat
gccccagtacaggggaacgccagggccaaaaagggggagtgggtaggtag
gggatt
gaattctttttaactttttcattactactgtatttgacaatctcagattc
aatatttgaaggatgcattttccctccatatcaaattttactaacagagc
aatggagatatatttgagggcagagtggaaaatgagatagggttaacatc
aaagttgataaaggaaacacaaatgatacagggtgaaagctgatttattt
ttgtaattgagggaggcagaaaagaacaacagctggcattctaattttgg
gggatgctagatttaatatttttttaggtaaatcattaaattatgggctt
ttactgtctaaactttaatagtttttcttctgaggctgaagataggaata
ccaattaattttggaagcaggcatggccgtggacacctgtgtccccaggc
tcaggggacagagacaaaaggaccacaatttcaagaccattctgagtgac
acaagaaacctctctcagaaaattattaaagaaaataaagaaacaaaatt
aattttggacagagcatggctttaactccttagtgttgggcatcttagta
cttctgtttgaaattatttatttgcaaagcaccctaaaggcattgtctct
tgatgagtggtcattttcctccttcttttgtgtgtctgatgcatgcatat
gttctggtgaacgtatacacatgtgaatgtatgtggagtctgaccaccta
tcttttgagcaatagtttctccctgaacctgcagcaacccttagggttcc
ttttgtttctgtcttcccagggctggaatttacaggcccatgcctctgca
cctgacttttttctatgggttatgacactaattgcaggccttatactttt
ctaaccaagccaacttccagtcccccacatcccggaaacaacaaccaacc
aacaaaaaccctatactttttatttttaaccagtaaatattccctggagt
gtacttgtctccagagccagagatagcaccagatcttctggatctggatt
acacatgtgcttatactgaccacatggagcctgaaacactcagtagtctc
ctgaagaccgcaattgttcttaggatgagccattctttagccccggagta
gtttgaggtcaaggatctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58956755_58957360
seq2: B6Ng01-045D12.b_46_651 (reverse)

seq1  AATCCCCTACCTACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTACCTACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTAC  50

seq1  TGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTAATGG  100

seq1  CCGACTAGGCCATTTTTTGATACATATGCAGCTATAGTCAAGAGCTCCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTAGGCCATTTTTTGATACATATGCAGCTATAGTCAAGAGCTCCGG  150

seq1  GGTACTGGTTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAGTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGTTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAGTTCCCT  200

seq1  TTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGCTC  250

seq1  CATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGG  300

seq1  CATAGTTTAGGGTTTTGAATCCATACATTTGAATTCTGCTTCTCTGTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTAGGGTTTTGAATCCATACATTTGAATTCTGCTTCTCTGTATC  350

seq1  TGTGCACATGCAGGCTTTTGTATCATGTATCATGCTAGCTGTTCTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATGCAGGCTTTTGTATCATGTATCATGCTAGCTGTTCTCTCTT  400

seq1  TCCCTCTTCTGTCACCAAACAGAATTTACCTGGAATCTCTAGAAAATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTCTGTCACCAAACAGAATTTACCTGGAATCTCTAGAAAATCTG  450

seq1  TATATAGAAGACTTTGTGCTTACTAGCTGAGCTCCATTTAGTGCACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAAGACTTTGTGCTTACTAGCTGAGCTCCATTTAGTGCACAAAC  500

seq1  TTGTGCAGGCAGGGATGTAATTCAGCAAAGAGTTTGCATGCAAGCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGGCAGGGATGTAATTCAGCAAAGAGTTTGCATGCAAGCCTGAC  550

seq1  AATCTTATTGTGAATCCTGAAATACGTGTTGAATCAGATTTAGCAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATTGTGAATCCTGAAATACGTGTTGAATCAGATTTAGCAATACA  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606

seq1: chr17_58814128_58815272
seq2: B6Ng01-045D12.g_68_1188

seq1  GAATTCTTTTTAACTTTTTCATTACTACTGTATTTGACAATCTCAGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTAACTTTTTCATTACTACTGTATTTGACAATCTCAGATTC  50

seq1  AATATTTGAAGGATGCATTTTCCCTCCATATCAAATTTTACTAACAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGAAGGATGCATTTTCCCTCCATATCAAATTTTACTAACAGAGC  100

seq1  AATGGAGATATATTTGAGGGCAGAGTGGAAAATGAGATAGGGTTAACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGATATATTTGAGGGCAGAGTGGAAAATGAGATAGGGTTAACATC  150

seq1  AAAGTTGATAAAGGAAACACAAATGATACAGGGTGAAAGCTGATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGATAAAGGAAACACAAATGATACAGGGTGAAAGCTGATTTATTT  200

seq1  TTGTAATTGAGGGAGGCAGAAAAGAACAACAGCTGGCATTCTAATTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTGAGGGAGGCAGAAAAGAACAACAGCTGGCATTCTAATTTTGG  250

seq1  GGGATGCTAGATTTAATATTTTTTTAGGTAAATCATTAAATTATGGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTAGATTTAATATTTTTTTAGGTAAATCATTAAATTATGGGCTT  300

seq1  TTACTGTCTAAACTTTAATAGTTTTTCTTCTGAGGCTGAAGATAGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTAAACTTTAATAGTTTTTCTTCTGAGGCTGAAGATAGGAATA  350

seq1  CCAATTAATTTTGGAAGCAGGCATGGCCGTGGACACCTGTGTCCCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAATTTTGGAAGCAGGCATGGCCGTGGACACCTGTGTCCCCAGGC  400

seq1  TCAGGGGACAGAGACAAAAGGACCACAATTTCAAGACCATTCTGAGTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGACAGAGACAAAAGGACCACAATTTCAAGACCATTCTGAGTGAC  450

seq1  ACAAGAAACCTCTCTCAGAAAATTATTAAAGAAAATAAAGAAACAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAACCTCTCTCAGAAAATTATTAAAGAAAATAAAGAAACAAAATT  500

seq1  AATTTTGGACAGAGCATGGCTTTAACTCCTTAGTGTTGGGCATCTTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGACAGAGCATGGCTTTAACTCCTTAGTGTTGGGCATCTTAGTA  550

seq1  CTTCTGTTTGAAATTATTTATTTGCAAAGCACCCTAAAGGCATTGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTGAAATTATTTATTTGCAAAGCACCCTAAAGGCATTGTCTCT  600

seq1  TGATGAGTGGTCATTTTCCTCCTTCTTTTGTGTGTCTGATGCATGCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTGGTCATTTTCCTCCTTCTTTTGTGTGTCTGATGCATGCATAT  650

seq1  GTTCTGGTGAACGTATACACATGTGAATGTATGTGGAGTCTGACCACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTGAACGTATACACATGTGAATGTATGTGGAGTCTGACCACCTA  700

seq1  TCTTTTGAGCAATAGTTTCTCCCTGAACCTGCAGCAACCCTTAGGGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGCAATAGTTTCTCCCTGAACCTGCAGCAACCCTTAGGGTTCC  750

seq1  TTTTGTTTCTGTCTTCCCAGGGCTGGAA-TTACAGGCCCATGCCTCTGCA  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTGTTTCTGTCTTCCCAGGGCTGGAATTTACAGGCCCATGCCTCTGCA  800

seq1  CCTGAC-TTTTTCTATGGGTTTATGACAACTAATTGCAGGGCCTTATAC-  847
      |||||| |||||||||||| ||||||| |||||||||| |||||||||| 
seq2  CCTGACTTTTTTCTATGGG-TTATGAC-ACTAATTGCA-GGCCTTATACT  847

seq1  TTTCTAACCAAGCCAACTTCCAAGTCCCCCACAATCACAGAAAACAAACA  897
      ||||||||||||||||||||| |||||||||| ||| | ||||   ||||
seq2  TTTCTAACCAAGCCAACTTCC-AGTCCCCCAC-ATCCCGGAAA--CAACA  893

seq1  AACAAACAAACAAAAAACCCTATAC-TTTTATTTTTAAACAGTAAATA-T  945
      | ||| |||   ||||||||||||| |||||||||||| ||||||||| |
seq2  ACCAACCAA--CAAAAACCCTATACTTTTTATTTTTAACCAGTAAATATT  941

seq1  CCCT-GAGTGTACTTGTCTCCAGAGGCCAGAAGATAGCACCAGATCTTCT  994
      |||| ||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CCCTGGAGTGTACTTGTCTCCAGA-GCCAG-AGATAGCACCAGATCTTCT  989

seq1  GGATCTGGAATTACACATGTGCTTATAAACTGACCCACATGGGAGCCTGA  1044
      |||||||| |||||||||||||||||  ||||| |||||| |||||||||
seq2  GGATCTGG-ATTACACATGTGCTTAT--ACTGA-CCACAT-GGAGCCTGA  1034

seq1  AAACAAACTCAGGTAGGTCTCTTGAAGAACAGCAATTGTTCTTTAGTGAT  1094
      |   | ||||| ||| ||||| ||||| || |||||||||| |||| |||
seq2  A---ACACTCA-GTA-GTCTCCTGAAG-ACCGCAATTGTTC-TTAG-GAT  1076

seq1  GAGCCATTCCTTAGCCCCAGGAGTTTAGTTTTGAGTGTCACAGGATCTCT  1144
      ||||||||| |||||||| ||||  ||| |||||| |||| |||||||||
seq2  GAGCCATTCTTTAGCCCC-GGAG--TAG-TTTGAG-GTCA-AGGATCTCT  1120

seq1  G  1145
      |
seq2  G  1121