BAC Information

Click to search

BAC

Clone NameB6Ng01-045K18
Chromosome17 (Build37)17 (Build37)
Map Location 33,471,634 - 33,472,79121,127,792 - 21,127,955
singlet/doubletsingletsinglet
Overlap geneZfp81
Upstream geneAkap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468
Downstream geneZfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045K18.bB6Ng01-045K18.g
ACCDH871063DH871064
length1,142602
definitionDH871063|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K18, 5' end.DH871064|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,471,634 - 33,472,791)(21,127,792 - 21,127,955)
sequence
gaattctttcatggatcagaagctgagaagaacgaatgaatgctttccca
cactgcttacaaacatagtgcttctctccggtatgagttctctcatgatt
gttacgggttgtgggatcactgaaggctttcccacagtgcttacataaat
acggtttctctccagtgtgaattctttcatgtttgcgaaggtacgaagaa
cgtccgaatactttcccacactgcttacacgcataaagtttttctcgggt
atgacttctttcatgttggagaaggtggtaagaatgaatacatgctttcc
cacattgtttacacacataaggtctgtctccagtatgagttcgttcatgg
ttataacaggcccttggatgaatgaaagctttcccacaatatttacatgc
aaatgtcttctctctggtatgaattttataatgtttgataaggtgactgg
aattaacaaaggcttctccacactgcttacacacaaatggtttttctcca
gtttggattctttcatatgactgaccataactacatgtcatgatagccgt
ttcaaattgcttgtattcatggaggttatcaccagtatgtgttgtctcat
aatcttgatcagaagtgagactcctacaggggtcattagactgtttattt
ccatatggtttctctttgggaggattctcatgggcaagaaaagactcaga
atatgcaagatctttccaatatttcttatgcttaataggcttttccatac
atttctgatactcatatggtttctctacagttagtagtctggaggtgcac
atctgactgtgaaagaccaatgacatcatttttacttgcactgttttcat
atactactattccggaggtatgtacttattaacgatatgctcttgaatct
gttggtgcatttctctatactgaataccacgttcaaattcatagatcctt
caccatgagagtgctgaatacataatagatagtactaaagtcttatggct
agcccgaaagtgtggaggctgggtttggccaacctgtatttgtatactca
agggtaaaggttgaaccactgcaagtttgaggtcactctggttcacaaaa
aaagcttcattatagggaaaacatttttaaacctgagaggac
gaattccttcttcttgagcttcatgtggtctgtgaattgtatcttggtta
tttggagcttttgggctaatatccattagtaagtgcataacatgtttttt
tgtttttttgtttttttttttggtcagttatgacctttgtttattattag
atattttcttcatttacatttcaaatgctatccctaaagccccctataca
cttccctgccctgctccccaacccacccactcctgcttcctggccctggc
attcccctgtactggggcatatgatctttgcaagaccaagggcctctcct
ctcagtgatggcccactaggccatcctctgctacatatgcaactagagac
acagctctggggaggaggagactggttagttcatattgttgttccttcta
aatggtcgcagacccctttagctccttgggtactttctctagatccttca
ttagggtccctgtgttccatccaatagggggactgtgaggatccacttct
gtatttgccaggcactggcatagcctcacaagagagagctttgtcagggt
cctgtcagcaaaatcttgctggaatatgcaatagtgtctgggtttggtgg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33471634_33472791
seq2: B6Ng01-045K18.b_44_1185

seq1  GAATTCTTTCATGGATCAGAAGCTGAGAAGAACGAATGAATGCTTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGGATCAGAAGCTGAGAAGAACGAATGAATGCTTTCCCA  50

seq1  CACTGCTTACAAACATAGTGCTTCTCTCCGGTATGAGTTCTCTCATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTACAAACATAGTGCTTCTCTCCGGTATGAGTTCTCTCATGATT  100

seq1  GTTACGGGTTGTGGGATCACTGAAGGCTTTCCCACAGTGCTTACATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGGGTTGTGGGATCACTGAAGGCTTTCCCACAGTGCTTACATAAAT  150

seq1  ACGGTTTCTCTCCAGTGTGAATTCTTTCATGTTTGCGAAGGTACGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTTCTCTCCAGTGTGAATTCTTTCATGTTTGCGAAGGTACGAAGAA  200

seq1  CGTCCGAATACTTTCCCACACTGCTTACACGCATAAAGTTTTTCTCGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCGAATACTTTCCCACACTGCTTACACGCATAAAGTTTTTCTCGGGT  250

seq1  ATGACTTCTTTCATGTTGGAGAAGGTGGTAAGAATGAATACATGCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCTTTCATGTTGGAGAAGGTGGTAAGAATGAATACATGCTTTCC  300

seq1  CACATTGTTTACACACATAAGGTCTGTCTCCAGTATGAGTTCGTTCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGTTTACACACATAAGGTCTGTCTCCAGTATGAGTTCGTTCATGG  350

seq1  TTATAACAGGCCCTTGGATGAATGAAAGCTTTCCCACAATATTTACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAGGCCCTTGGATGAATGAAAGCTTTCCCACAATATTTACATGC  400

seq1  AAATGTCTTCTCTCTGGTATGAATTTTATAATGTTTGATAAGGTGACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTCTCTCTGGTATGAATTTTATAATGTTTGATAAGGTGACTGG  450

seq1  AATTAACAAAGGCTTCTCCACACTGCTTACACACAAATGGTTTTTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAAAGGCTTCTCCACACTGCTTACACACAAATGGTTTTTCTCCA  500

seq1  GTTTGGATTCTTTCATATGACTGACCATAACTACATGTCATGATAGCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATTCTTTCATATGACTGACCATAACTACATGTCATGATAGCCGT  550

seq1  TTCAAATTGCTTGTATTCATGGAGGTTATCACCAGTATGTGTTGTCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGCTTGTATTCATGGAGGTTATCACCAGTATGTGTTGTCTCAT  600

seq1  AATCTTGATCAGAAGTGAGACTCCTACAGGGGTCATTAGACTGTTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGATCAGAAGTGAGACTCCTACAGGGGTCATTAGACTGTTTATTT  650

seq1  CCATATGGTTTCTCTTTGGGAGGATTCTCATGGGCAAGAAAAGACTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGGTTTCTCTTTGGGAGGATTCTCATGGGCAAGAAAAGACTCAGA  700

seq1  ATATGCAAGATCTTTCCAATATTTCTTATGCTTAATAGGCTTTTCCATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAGATCTTTCCAATATTTCTTATGCTTAATAGGCTTTTCCATAC  750

seq1  ATTTCTGATACTCATATGGTTTCTCTACAGTTAGTAGTCT-GAGGTGCAC  799
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTCTGATACTCATATGGTTTCTCTACAGTTAGTAGTCTGGAGGTGCAC  800

seq1  ATCTGACTGTGAAAGACCAATGACATCATTTTTACTTGCACTGTTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTGTGAAAGACCAATGACATCATTTTTACTTGCACTGTTTTCAT  850

seq1  ATACTACTATTCCGGGAGGTATGTACTTATTAACGATATGCTCTTGAATC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACTACTATTCC-GGAGGTATGTACTTATTAACGATATGCTCTTGAATC  899

seq1  TGTTGGTGCATTTCTCTATACTGAATACCACGTTCAAATTCATAGAATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTTGGTGCATTTCTCTATACTGAATACCACGTTCAAATTCATAG-ATCC  948

seq1  TTCAACCATGAGAGTGCTGAAAAAAAAAAAAAAAAAGAATAGTACTATAG  999
      ||| ||||||||||||||||| | | || |        ||||||||| ||
seq2  TTC-ACCATGAGAGTGCTGAATACATAATA-------GATAGTACTAAAG  990

seq1  TCTTATGGCTAGCCCGAAAAGTGTTGGAGGCTGGGTTTGCCACACTTGTT  1049
      |||||||||||||||| |||||| ||||||||||||||| |  || ||| 
seq2  TCTTATGGCTAGCCCG-AAAGTG-TGGAGGCTGGGTTTGGCCAACCTGTA  1038

seq1  ATTGTAATACTTAGAGGGTAAAGGTTGAGCAACTGCAAGTTTGAGGTCAA  1099
       |||| ||||| | |||||||||||||| | |||||||||||||||||| 
seq2  TTTGT-ATACTCA-AGGGTAAAGGTTGAACCACTGCAAGTTTGAGGTCAC  1086

seq1  CCTGAGTCACAAAGAAAGACCTCATATTAAGGGAAAACAATTTATAAACC  1149
       |||  ||||||| |||| | |||| |  ||||||||| |||| ||||||
seq2  TCTGGTTCACAAAAAAAG-CTTCAT-TATAGGGAAAAC-ATTTTTAAACC  1133

seq1  TGAAAGGAC  1158
      ||| |||||
seq2  TGAGAGGAC  1142

seq1: chr17_21127792_21127955
seq2: B6Ng01-045K18.g_212_670 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AACCACCAAACCCAGACACTATTGCATATTCCAGCAAGATTTTGCTGACA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GGACCCTGACAAAGCTCTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAAT  100

seq1  --------------------------------------------------  0
                                                        
seq2  ACAGAAGTGGATCCTCACAGTCCCCCTATTGGATGGAACACAGGGACCCT  150

seq1  --------------------------------------------------  0
                                                        
seq2  AATGAAGGATCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCGACCA  200

seq1  --------------------------------------------------  0
                                                        
seq2  TTTAGAAGGAACAACAATATGAACTAACCAGTCTCCTCCTCCCCAGAGCT  250

seq1  ------------------------------------------AACCACTG  8
                                                 | |||||
seq2  GTGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTGGGCCATCACTG  300

seq1  AACCCAGACAC------TATTGCATAGTGTACTGGCCTTCCCAGTACAGG  52
      |    |||  |      | ||||| ||   |   ||   |||||||||||
seq2  AGAGGAGAGGCCCTTGGTCTTGCAAAGATCATATGC---CCCAGTACAGG  347

seq1  GGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGAGTTGGAGATCAGGGCGG  102
      ||||||||||||||||||||  |||||||||| ||||| || |||||| |
seq2  GGAATGCCAGGGCCAGGAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGCAG  397

seq1  GGGAGGGTATAGGGGGCTTTGGGGATAGCATTTGAAATGCAAATGAAGAA  152
      || || |||||||||||||| |||||||||||||||||| ||||||||||
seq2  GGAAGTGTATAGGGGGCTTTAGGGATAGCATTTGAAATGTAAATGAAGAA  447

seq1  AATATCTAATAA  164
      ||||||||||||
seq2  AATATCTAATAA  459