BAC Information

Click to search

BAC

Clone NameB6Ng01-046J06
Chromosome17 (Build37)
Map Location 14,506,243 - 14,652,280
singlet/doubletdoublet
Overlap geneSmoc2, LOC664856
Upstream geneLOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831, 4930488N24Rik, Dact2
Downstream geneThbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046J06.bB6Ng01-046J06.g
ACCDH871696DH871697
length4561,091
definitionDH871696|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J06, 5' end.DH871697|Mus musculus domesticus DNA, BAC clone: B6Ng01-046J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,506,243 - 14,506,705)(14,651,175 - 14,652,280)
sequence
tgtcctctgttctctgtgctcctgctgcttaagaagagttgttttggcca
taagagggaaagcttattgttatcagtcaagggccatcaagtatgaagca
gagaaggggtcaactctaggaacgaatatttggaccacttcttgctgctg
gctttggccagagaggttaaatatttaagaagccaaggaagctagatgcc
tcaaatagctttctatagaatgtaaatatttgtatctagaaaatgtcatt
taaagagaggaatatgtgaaggctggagagatggcccagtggttaagagc
actggctgctcttccagagagaggacataggttcagttccctgcactggt
atgacagctcacaactgtctgtaacttcagttccagggtatctggcatcc
tcatacagacaaaacatcaatgtatatttaaaatagggaagggggaggga
aggagg
gaattcatgggctgcactgctctctaaactggacttaagattcctaagat
ggttctagtgccaccagacagagcgtggtgatagaaagaacgttggaagg
taacacagtcaccatgaccactgtgcttacagtagtgccttccctcaaac
atcttgcaagtgtgtgaccctggaaattttttcctagcatctctagggcc
tgaacaaaatctcaaaggagcctggcatctggatccttagccatgcagtg
agtctgtgtgtctgacacatgcgaagtagtaagggaaatggttggaattg
cattgtgaggaagcctgcatcctctctccattctaaacctctgcttagtt
tacacagtctcctctccatcagagcagggcagccaggagtgtccactccc
agggggtatgttcctggcatcactggaaacacagtggctccaatcagcac
ctatgtgctgagcaatgcatacagccaaaagcataatgctttcaactcag
gcatgtggtaaactttaaaagatcaaaaaccattcagaggcatctggcag
cctgtgaatgccctctatatgagtaatgtttagcttcatccactcccaag
gaaggacttagggttggaggttcaggtggggactaaaggaaaaggcatgt
acaggagccatgctaggtctatgtatacaccaacagtacatatagtctag
tcacgcggaaaatcctctgacctatcttttatggctgtgttcttatagct
ggtgggactgttttcatcacagtaggctcaagcccaagtaaaagtaggct
tgggcaaaacgaggagagaccgggtagatcatatcagggcacaccccctc
cctttcctatgcgacacaagcaaatcaaagcatagtatttaatggtttct
gtttaggaagctctgatttgacgtgatttccttctgaacggagtcaggct
tgtttctcgaagacctataaagtacattgtagagtaaagctctgctgcac
ccaaggagcgtctctcttcgtgttcatgatagactacactgtaaccacac
tgctgcagtcttacatacaccagactggattgccacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14506243_14506705
seq2: B6Ng01-046J06.b_44_506

seq1  GGAATTCTGTCCTCTGTTCTCTGTGCTCCTGCTGCTTAAGAAGAGTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGTCCTCTGTTCTCTGTGCTCCTGCTGCTTAAGAAGAGTTGTT  50

seq1  TTGGCCATAAGAGGGAAAGCTTATTGTTATCAGTCAAGGGCCATCAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATAAGAGGGAAAGCTTATTGTTATCAGTCAAGGGCCATCAAGTA  100

seq1  TGAAGCAGAGAAGGGGTCAACTCTAGGAACGAATATTTGGACCACTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGAGAAGGGGTCAACTCTAGGAACGAATATTTGGACCACTTCTT  150

seq1  GCTGCTGGCTTTGGCCAGAGAGGTTAAATATTTAAGAAGCCAAGGAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGCTTTGGCCAGAGAGGTTAAATATTTAAGAAGCCAAGGAAGCT  200

seq1  AGATGCCTCAAATAGCTTTCTATAGAATGTAAATATTTGTATCTAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCTCAAATAGCTTTCTATAGAATGTAAATATTTGTATCTAGAAAA  250

seq1  TGTCATTTAAAGAGAGGAATATGTGAAGGCTGGAGAGATGGCCCAGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTAAAGAGAGGAATATGTGAAGGCTGGAGAGATGGCCCAGTGGT  300

seq1  TAAGAGCACTGGCTGCTCTTCCAGAGAGAGGACATAGGTTCAGTTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCACTGGCTGCTCTTCCAGAGAGAGGACATAGGTTCAGTTCCCTG  350

seq1  CACTGGTATGACAGCTCACAACTGTCTGTAACTTCAGTTCCAGGGTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTATGACAGCTCACAACTGTCTGTAACTTCAGTTCCAGGGTATCT  400

seq1  GGCATCCTCATACAGACAAAACATCAATGTATATTTAAAATAGGGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTCATACAGACAAAACATCAATGTATATTTAAAATAGGGAAGGG  450

seq1  GGAGGGAAGGAGG  463
      |||||||||||||
seq2  GGAGGGAAGGAGG  463

seq1: chr17_14651175_14652280
seq2: B6Ng01-046J06.g_66_1156 (reverse)

seq1  TGTGTGTGGCAATCAAGTGCCTTGGTGTTAATTGTAAAGACTGCAGCAGT  50
      |||||||||||||| |||    ||||||    ||| ||||||||||||||
seq2  TGTGTGTGGCAATCCAGT---CTGGTGT---ATGT-AAGACTGCAGCAGT  43

seq1  GT-GTTACAGTGGTAGTCTATTCCATGGAAACACGAAGGAGAGACGCTCC  99
      || |||||||| |||||||||  ||||  |||||||| ||||||||||||
seq2  GTGGTTACAGT-GTAGTCTAT--CATG--AACACGAA-GAGAGACGCTCC  87

seq1  CTGGGTGCAAGCCAGGAGCTTTACTCTACAATGTACTTTATAGGTCTCCG  149
       ||||||| |||   |||||||||||||||||||||||||||||||| ||
seq2  TTGGGTGC-AGC--AGAGCTTTACTCTACAATGTACTTTATAGGTCTTCG  134

seq1  AGAAACAAGCCTGGACTCCGTTCAGAAGGAAATCACGTCAAATCAGAGCT  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGCCT-GACTCCGTTCAGAAGGAAATCACGTCAAATCAGAGCT  183

seq1  TCCTAAACAGAAACCA-TAAATACTATGCTTTGATTTGCTTGTGTCGCAT  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTAAACAGAAACCATTAAATACTATGCTTTGATTTGCTTGTGTCGCAT  233

seq1  AGGAAAGGGAGGGGGTGTGCCCTGATATGATCTACCCGGTCTCTCCTCGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGAGGGGGTGTGCCCTGATATGATCTACCCGGTCTCTCCTCGT  283

seq1  TTTGCCCAAGCCTACTTTTACTTGGGCTTGAGCCTACTGTGATGAAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAAGCCTACTTTTACTTGGGCTTGAGCCTACTGTGATGAAAACA  333

seq1  GTCCCACCAGCTATAAGAACACAGCCATAAAAGATAGGTCAGAGGATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCACCAGCTATAAGAACACAGCCATAAAAGATAGGTCAGAGGATTTT  383

seq1  CCGCGTGACTAGACTATATGTACTGTTGGTGTATACATAGACCTAGCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGTGACTAGACTATATGTACTGTTGGTGTATACATAGACCTAGCATG  433

seq1  GCTCCTGTACATGCCTTTTCCTTTAGTCCCCACCTGAACCTCCAACCCTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTACATGCCTTTTCCTTTAGTCCCCACCTGAACCTCCAACCCTA  483

seq1  AGTCCTTCCTTGGGAGTGGATGAAGCTAAACATTACTCATATAGAGGGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCCTTGGGAGTGGATGAAGCTAAACATTACTCATATAGAGGGCA  533

seq1  TTCACAGGCTGCCAGATGCCTCTGAATGGTTTTTGATCTTTTAAAGTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGCTGCCAGATGCCTCTGAATGGTTTTTGATCTTTTAAAGTTTA  583

seq1  CCACATGCCTGAGTTGAAAGCATTATGCTTTTGGCTGTATGCATTGCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGCCTGAGTTGAAAGCATTATGCTTTTGGCTGTATGCATTGCTCA  633

seq1  GCACATAGGTGCTGATTGGAGCCACTGTGTTTCCAGTGATGCCAGGAACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATAGGTGCTGATTGGAGCCACTGTGTTTCCAGTGATGCCAGGAACA  683

seq1  TACCCCCTGGGAGTGGACACTCCTGGCTGCCCTGCTCTGATGGAGAGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTGGGAGTGGACACTCCTGGCTGCCCTGCTCTGATGGAGAGGAG  733

seq1  ACTGTGTAAACTAAGCAGAGGTTTAGAATGGAGAGAGGATGCAGGCTTCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAAACTAAGCAGAGGTTTAGAATGGAGAGAGGATGCAGGCTTCC  783

seq1  TCACAATGCAATTCCAACCATTTCCCTTACTACTTCGCATGTGTCAGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGCAATTCCAACCATTTCCCTTACTACTTCGCATGTGTCAGACA  833

seq1  CACAGACTCACTGCATGGCTAAGGATCCAGATGCCAGGCTCCTTTGAGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTCACTGCATGGCTAAGGATCCAGATGCCAGGCTCCTTTGAGAT  883

seq1  TTTGTTCAGGCCCTAGAGATGCTAGGAAAAAATTTCCAGGGTCACACACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAGGCCCTAGAGATGCTAGGAAAAAATTTCCAGGGTCACACACT  933

seq1  TGCAAGATGTTTGAGGGAAGGCACTACTGTAAGCACAGTGGTCATGGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGATGTTTGAGGGAAGGCACTACTGTAAGCACAGTGGTCATGGTGA  983

seq1  CTGTGTTACCTTCCAACGTTCTTTCTATCACCACGCTCTGTCTGGTGGCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTACCTTCCAACGTTCTTTCTATCACCACGCTCTGTCTGGTGGCA  1033

seq1  CTAGAACCATCTTAGGAATCTTAAGTCCAGTTTAGAGAGCAGTGCAGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCATCTTAGGAATCTTAAGTCCAGTTTAGAGAGCAGTGCAGCCC  1083

seq1  ATGAATTC  1106
      ||||||||
seq2  ATGAATTC  1091